THE ROLE of Aegilops SPECIES in the ORIGIN and IMPROVEMENT of COMMON WHEAT
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Genome Sequence of the Progenitor of the Wheat D Genome Aegilops Tauschii Ming-Cheng Luo1*, Yong Q
OPEN LETTER doi:10.1038/nature24486 Genome sequence of the progenitor of the wheat D genome Aegilops tauschii Ming-Cheng Luo1*, Yong Q. Gu2*, Daniela Puiu3*, Hao Wang4,5,6*, Sven O. Twardziok7*, Karin R. Deal1, Naxin Huo1,2, Tingting Zhu1, Le Wang1, Yi Wang1,2, Patrick E. McGuire1, Shuyang Liu1, Hai Long1, Ramesh K. Ramasamy1, Juan C. Rodriguez1, Sonny L. Van1, Luxia Yuan1, Zhenzhong Wang1,8, Zhiqiang Xia1, Lichan Xiao1, Olin D. Anderson2, Shuhong Ouyang2,8, Yong Liang2,8, Aleksey V. Zimin3, Geo Pertea3, Peng Qi4,5, Jeffrey L. Bennetzen6, Xiongtao Dai9, Matthew W. Dawson9, Hans-Georg Müller9, Karl Kugler7, Lorena Rivarola-Duarte7, Manuel Spannagl7, Klaus F. X. Mayer7,10, Fu-Hao Lu11, Michael W. Bevan11, Philippe Leroy12, Pingchuan Li13, Frank M. You13, Qixin Sun8, Zhiyong Liu8, Eric Lyons14, Thomas Wicker15, Steven L. Salzberg3,16, Katrien M. Devos4,5 & Jan Dvořák1 Aegilops tauschii is the diploid progenitor of the D genome of We conclude therefore that the size of the Ae. tauschii genome is about hexaploid wheat1 (Triticum aestivum, genomes AABBDD) and 4.3 Gb. an important genetic resource for wheat2–4. The large size and To assess the accuracy of our assembly, sequences of 195 inde- highly repetitive nature of the Ae. tauschii genome has until now pendently sequenced and assembled AL8/78 BAC clones8, which precluded the development of a reference-quality genome sequence5. contained 25,540,177 bp in 2,405 unordered contigs, were aligned to Here we use an array of advanced technologies, including ordered- Aet v3.0. Five contigs failed to align and six extended partly into gaps, clone genome sequencing, whole-genome shotgun sequencing, accounting for 0.25% of the total length of the contigs. -
Establishment of a Global Network for the in Situ Conservation of Crop Wild Relatives: Status and Needs
THEMATIC BACKGROUND STUDY Establishment of a Global Network for the In Situ Conservation of Crop Wild Relatives: Status and Needs Nigel Maxted and Shelagh Kell BACKGROUND STUDY PAPER NO. 39 October 2009 COMMISSION ON GENETIC RESOURCES FOR FOOD AND AGRICULTURE ESTABLISHMENT OF A GLOBAL NETWORK FOR THE IN SITU CONSERVATION OF CROP WILD RELATIVES: STATUS AND NEEDS by *By Nigel Maxted and Shelagh Kell The content of this document is entirely the responsibility of the authors, and does not .necessarily represent the views of the FAO, or its Members 2 * School of Biosciences, University of Birmingham. Disclaimer The content of this document is entirely the responsibility of the authors, and does not necessarily represent the views of the Food and Agriculture Organization of the United Nations (FAO), or its Members. The designations employed and the presentation of material do not imply the expression of any opinion whatsoever on the part of FAO concerning legal or development status of any country, territory, city or area or of its authorities or concerning the delimitation of its frontiers or boundaries. The mention of specific companies or products of manufacturers, whether or not these have been patented, does not imply that these have been endorsed by FAO in preference to others of a similar nature that are not mentioned. CONTENTS SUMMARY 6 ACKNOWLEDGEMENTS 7 PART 1: INTRODUCTION 8 1.1 Background and scope 8 1.2 The global and local importance of crop wild relatives 10 1.3 Definition of a crop wild relative 12 1.4 Global numbers of crop -
Taxonomy, Morphology and Palynology of Aegilops Vavilovii (Zhuk.) Chennav
African Journal of Agricultural Research Vol. 5(20), pp. 2841-2849, 18 October, 2010 Available online at http://www.academicjournals.org/AJAR ISSN 1991-637X ©2010 Academic Journals Full Length Research Paper Taxonomy, morphology and palynology of Aegilops vavilovii (Zhuk.) Chennav. (Poaceae: Triticeae) Evren Cabi1* Musa Doan1 Hülya Özler2, Galip Akaydin3 and Alptekin Karagöz4 1Department of Biological Sciences, Faculty of Arts and Sciences, Middle East Technical University, Ankara, Turkey. 2Department of Biology, Faculty of Arts and Sciences, Sinop University, Sinop Turkey. 3Department of Biology Education, Hacettepe University, 06800 Ankara, Turkey. 4Department of Biology, Aksaray University, Aksaray, Turkey. Accepted 23 September, 2010 Aegilops vavilovii (Zhuk.) Chennav., a rare species, was collected from Southeast Anatolia, Turkey. During the field studies of the project “Taxonomic revision of Tribe Triticeae in Turkey”, Ae. vavilovii was accidentally recollected from three localities in anliurfa and Mardin provinces in 2007 and 2008, respectively. The main objective of this study is to shed light on the diagnostic characteristics of this rare species including its morphological, palynological and micro morphological features. Moreover, an emended and expanded description, distribution, phenology and ecology of this rare species are also provided. A. vavilovii and A. crassa are naturally found in the Southeastern part of Turkey and they share similar morphological features that caused a confused taxonomy. Pollen grains of A. vavilovii are heteropolar, monoporate and spheroidal (A/B: 1,13) typically as Poaceous. However, it generally, prefers clayish loam soils that are slightly alkaline (pH 7.7) with low organic content (1.54%). Although it is a rare species with very narrow area of distribution, very few samples have been represented in ex situ collections and the species has not been involved in any in situ conservation activities to save its genetic resources in Turkey. -
Interspecific Hybridization Between Durum Wheat and Aegilops Umbellulata (Zhuk.)
713 Bulgarian Journal of Agricultural Science, 18 (No 5) 2012, 713-721 Agricultural Academy INTERSPECIFIC HYBRIDIZATION BETWEEN DURUM WHEAT AND AEGILOPS UMBELLULATA (ZHUK.) B. HADZHIIVANOVA, V. BOZHANOVA and D. DECHEV Field Crops Institute, BG - 6200 Chirpan, Bulgaria Abstract HADZHIIVANOVA, B., V. BOZHANOVA and D. DECHEV, 2012. Interspecific hybridization between durum wheat and Aegilops umbellulata (Zhuk.). Bulg. J. Agric. Sci., 18: 713-721 The possibility for obtaining of interspecific hybrids between three durum wheat genotypes (Triticum durum, 2n = 4x = 28, AABB genomes) and one accession of Aegilops umbellulata (2n = 2x = 18, UU genome) during two different seasons has been studied. A low crossability rate of 3% average for all genotypes over two years was achieved. The observed variation of crossability is due to a greatest extent to the genotype of durum wheat parent with 82.91% from total variation. Hybrid plants were obtained only by means of embryo rescue method. The ability for in vitro regeneration was still independent of crossability of used durum wheat genotypes. All received F1 hybrids plants were identical they exhibited good tillering ability and manifested traits from both parents. In spite of the observed partially fertility in F1 hybrids between durum wheat and Aegilops umbellulata no germination of the hybrid seeds was ascertained. BC1 seeds were obtained from F1 hybrids of hybrid combination Beloslava × Aegilops umbellulata after backcrossing to the durum wheat parent. An increase of crossability with advancing of backcross progenies – from 1.6% in BC1 hybrids to 26.2% in BC2 hybrids has been found. Meiotic abnormalities including dyads and triads at the end of microsporogenesis as well as uninucleate microspores with a different shape and size were observed suggesting production of unreduced gametes in this cross. -
This Article Is from the March 2013 Issue Of
This article is from the March 2013 issue of published by The American Phytopathological Society For more information on this and other topics related to plant pathology, we invite you to visit APSnet at www.apsnet.org Identifying New Sources of Resistance to Eyespot of Wheat in Aegilops longissima H. Sheng and T. D. Murray, Department of Plant Pathology, Washington State University, Pullman 99164-6430 Abstract Sheng, H., and Murray, T. D. 2013. Identifying new sources of resistance to eyespot of wheat in Aegilops longissima. Plant Dis. 97:346-353. Eyespot, caused by Oculimacula yallundae and O. acuformis, is an substitution lines containing chromosomes 1Sl, 2Sl, 5Sl, and 7Sl, and a economically important disease of wheat. Currently, two eyespot re- 4Sl7Sl translocation were resistant to O. yallundae. Chromosomes 1Sl, sistance genes, Pch1 and Pch2, are used in wheat breeding programs 2Sl, 4Sl, and 5Sl contributed to resistance to O. acuformis more than but neither provides complete control or prevents yield loss. Aegilops others. Chromosomes 1Sl, 2Sl, 5Sl, and 7Sl provided resistance to both longissima is a distant relative of wheat and proven donor of genes pathogens. This is the first report of eyespot resistance in A. longis- useful for wheat improvement, including disease resistance. Forty A. sima. These results provide evidence that genetic control of eyespot longissima accessions and 83 A. longissima chromosome addition or resistance is present on multiple chromosomes of the Sl genome. This substitution lines were evaluated for resistance to eyespot. Among the research demonstrates that A. longissima is a potential new source of 40 accessions tested, 43% were resistant to O. -
Vascular Plant Diversity of the Alanya Castle Walls and Their Ecological Effects
www.biodicon.com Biological Diversity and Conservation ISSN 1308-8084 Online ISSN 1308-5301 Print Research article/Araştırma makalesi 13/1 (2020) 9-18 DOI: 10.46309/biodicon.2020.731423 Vascular plant diversity of the Alanya Castle walls and their ecological effects Ahmet AKSOY 1, Jale ÇELİK *2 ORCID: 0000-0002-9696-7122; 0000-0002-3624-2146 1 University of Akdeniz, Faculty of Science, Department of Biology, Antalya, Turkey 2 University of Akdeniz, Institute of Science and Technology, Department of Biology, Antalya, Turkey Abstract Since historical buildings are living mirrors of the past, it is very important to preserve and transfer them to future generations. In this study, plants growing on the walls of Alanya Castle were identified and the damages that these plants gave to the historical construction and the precautions to be taken to prevent these damages were emphasized. A total of 94 plant taxa, including five pteridophytes, one gymnosperm and 88 angiosperms, belonging to 35 families were identified on the walls of Alanya Castle. Conyza canadensis, Inula heterolepis, Phagnalon graecum, Arabis verna, Mercurialis annua, Fumaria parviflora, Cymbalaria microcalyx, Galium canum subsp. antalyense, Parietaria judaica, Hyoscyamus aureus, Poa bulbosa were the dominant plant species of Alanya Castle walls. Possible seed dispersion of these plants on the castle walls and the methods for controlling them are discussed in detail. We conclude that the most effective method of combating plants that grow naturally on historical buildings and give damage to these buildings is mechanical excavation. Key words: Alanya, biodiversity, mechanical excavation, urban ecosystems, wall flora ---------- ---------- Alanya Kalesi duvarlarının vasküler bitki çeşitliliği ve ekolojik etkileri Özet Tarihi yapılar geçmişin yaşayan aynaları olduklarından, onları korumak ve gelecek nesillere aktarmak çok önemlidir. -
Genotype-By-Sequencing Facilitates Genetic Mapping of a Stem Rust Resistance Locus in Aegilops Umbellulata, a Wild Relative of Cultivated Wheat Erena A
Edae et al. BMC Genomics (2016) 17:1039 DOI 10.1186/s12864-016-3370-2 RESEARCH ARTICLE Open Access Genotype-by-sequencing facilitates genetic mapping of a stem rust resistance locus in Aegilops umbellulata, a wild relative of cultivated wheat Erena A. Edae1*, Pablo D. Olivera2, Yue Jin1,2, Jesse A. Poland3 and Matthew N. Rouse1,2* Abstract Background: Wild relatives of wheat play a significant role in wheat improvement as a source of genetic diversity. Stem rust disease of wheat causes significant yield losses at the global level and stem rust pathogen race TTKSK (Ug99) is virulent to most previously deployed resistance genes. Therefore, the objective of this study was to identify loci conferring resistance to stem rust pathogen races including Ug99 in an Aegilops umbelluata bi-parental mapping population using genotype-by-sequencing (GBS) SNP markers. Results: A bi-parental F2:3 population derived from a cross made between stem rust resistant accession PI 298905 and stem rust susceptible accession PI 542369 was used for this study. F2 individuals were evaluated with stem rust race TTTTF followed by testing F2:3 families with races TTTTF and TTKSK. The segregation pattern of resistance to both stem rust races suggested the presence of one resistance gene. A genetic linkage map, comprised 1,933 SNP markers, was created for all seven chromosomes of Ae. umbellulata using GBS. A major stem rust resistance QTL that explained 80% and 52% of the phenotypic variations for TTTTF and TTKSK, respectively, was detected on chromosome 2U of Ae. umbellulata. Conclusion: The novel resistance gene for stem rust identified in this study can be transferred to commercial wheat varieties assisted by the tightly linked markers identified here. -
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DOI: 10.2478/s11535-006-0027-1 Research article CEJB 1(3) 2006 399–411 Distribution and characterization of Aegilops and Triticum species from the Bulgarian Black Sea coast Penko Spetsov1∗, Dragomir Plamenov2, Vanya Kiryakova1 1 Dobroudja Agricultural Institute, 9520 General Toshevo, Bulgaria 2 Pedagogical College – Dobrich 9300, Bs. Konstantin Preslavsky University, Shumen, Bulgaria Received 30 May 2006; accepted 24 July 2006 Abstract: A total of 158 Aegilops-Triticum samples representing six Aegilops species (one diploid, four tetraploid and one hexaploid) and one diploid Triticum were collected along the Bulgarian Black Sea coast, and their distribution on the 350 km long coastal line was reported. The region south of Kamchia river, accepted as the middle point of the coast, was characterized by the greatest diversity of these wild relatives of wheat. The most widely distributed species in this area was Ae. geniculata. Ae. cylindrica was distributed only in north (Durankulak), while Ae. biuncialis and Ae. triuncialis were collected both north and south of Kamchia river. All samples of Ae. neglecta were hexaploid. Natural hybrids of goatgrass and wheat were found in Ae. cylindrica populations. Triticum monococcum ssp. aegilopoides had limited distribution in the south region. Aegilops uniaristata was recorded as a new species for the Bulgarian flora. Most of the samples expressed resistance to powdery mildew in seedling and adult stage, but all of them were polymorphic regarding the resistance to leaf rust (cultures 73760 and 43763). The study revealed additional data for the distribution of Aegilops and Triticum species in Bulgaria and their potential value as genetic resources in wheat improvement. -
Molecular Phylogeny of the Genus Triticum L
Comparative and evolutionary genomics and proteomics 147 Chapter # MOLECULAR PHYLOGENY OF THE GENUS TRITICUM L. Golovnina K.1, Glushkov S.*1, Blinov A.1, Mayorov V.2, Adkison L.2 , Goncharov N.1 1 Institute of Cytology and Genetics, SB RAS, Novosibirsk, 630090, Russia; 2 Mercer University School of Medicine, Macon, USA * Corresponding author: e-mail: [email protected] Key words: wheat, Aegilops, molecular evolution, plasmon and B genome inheritance SUMMARY Motivation: The genus Triticum L. includes the major cereal crop, common or bread wheat (hexaploid Triticum aestivum L.), and other important cultivated species. Wheat has emerged as a classic polyploid model and a significant role of polyploidy as a widespread evolutionary strategy in angiosperms is known. Research on wheat phylogeny has contributed to the understanding of this important phenomenon, but there are still discrepancies and deficiencies in information. Results: Here, we conducted a phylogenetic analysis of all known wheat species and the closely related Aegilops species. This analysis was based on chloroplast matK gene comparison along with trnL intron sequences of some species. Polyploid wheat species are successfully divided only into two groups – Emmer (Dicoccoides and Triticum sections) and Timopheevii (Timopheevii section). Results reveal a strictly maternal plastid inheritance of all synthetic wheat amphyploids included in the study. Moreover, a concordance of chloroplast origin with the definite nuclear genomes of polyploid species that were inherited at the last hybridization events was found. This fact allows the most probable donor of the certain nuclear genome and plasmon at the same time to be determined. This suggests that there were two ancestor representatives of Aegilops speltoides that participated in the speciation of polyploid wheats with B and G genome in their genome composition. -
Resistance in Bread Wheat (Triticum Aestivum L.) Accession Citr 2401
Genetics of Russian wheat aphid (Diuraphis noxia) resistance in bread wheat (Triticum aestivum L.) accession CItr 2401 By THANDEKA NOKUTHULA SIKHAKHANE Submitted in accordance with the requirements for the degree of MASTER OF SCIENCE in the subject LIFE SCIENCES at the UNIVERSITY OF SOUTH AFRICA SUPERVISOR : Prof T.J. Tsilo CO-SUPERVISOR : Dr V.L. Tolmay JANUARY 2017 DECLARATION Name: ______________________________________________________ Student number: ______________________________________________________ Degree: ______________________________________________________ Exact wording of the title of the dissertation or thesis as appearing on the copies submitted for examination: Genetics of Russian wheat aphid (Diuraphis noxia) resistance in bread wheat (Triticum aestivum L.) accession CItr 2401 I declare that the above dissertation/thesis is my own work and that all the sources that I have used or quoted have been indicated and acknowledged by means of complete references. ________________________ _____________________ SIGNATURE DATE STUDENT NUMBER: 57652538 i ACKNOWLEDGEMENTS I would like to extend my sincere appreciation and gratitude to: My supervisors, Prof Toi Tsilo and Dr Vicki Tolmay for always being there for me whenever I required assistance, for teaching and grooming me, The Agricultural Research Council and the National Research Foundation for funding, Dr Astrid Jankielsohn, for all the RWA information she shared with me and her images and figures she allowed me to use, Dr Scott Sydenham, for all the molecular study information, -
ITCHGRASS (Rottboellia Cochinchinensis) from COSTA RICA1
Molecular basis for resistance to fluazifop-P-butyl in itchgrass ... 143 MOLECULAR BASIS FOR RESISTANCE TO FLUAZIFOP-P-BUTYL IN ITCHGRASS (Rottboellia cochinchinensis) FROM COSTA RICA1 Base Molecular para Resistência a Fluazifop-P-Butyl em Capim-Camalote (Rottboellia cochinchinensis) da Costa Rica CASTILLO-MATAMOROS, R.2, BRENES-ANGULO, A.2, HERRERA-MURILLO, F.3, and GÓMEZ-ALPÍZAR. L.2 ABSTRACT - Rottboellia cochinchinensis is an annual grass weed species known as itchgrass, or “caminadora” in America´s Spanish speaking countries, and has become a major and troublesome weed in several crops. The application of fluazifop-P-butyl at recommended rates (125 g a.i. ha-1) was observed to be failing to control itchgrass in a field in San José, Upala county, Alajuela province, Costa Rica. Plants from the putative resistant R. cochinchinensis population survived fluazifop-P-butyl when treated with 250 g a.i. ha-1 (2X label rate) at the three- to four-leaf stage under greenhouse conditions. PCR amplification and sequencing of partial carboxyl transferase domain (CT) of the acetyl-CoA carboxylase (ACCase) gene were used to determine the molecular mechanism of resistance. A single non-synonymous point mutation from TGG (susceptible plants) to TGC (putative resistant plants) that leads to a Trp-2027-Cys substitution was found. This Trp-2027-Cys mutation is known to confer resistance to all aryloxyphenoxyproprionate (APP) herbicides to which fluazifop-P-butyl belongs. To the best of our knowledge, this is the first report of fluazifop-P-butyl resistance and a mutation at position 2027 for a Costa Rican R. cochinchinensis population. -
Aegilops Triuncialis Subsp. Bozdagensis (Poaceae), a New Subspecies from South-Western Turkey
Aegilops triuncialis subsp. bozdagensis (Poaceae), a new subspecies from South-Western Turkey Evren CABİ*1, Burçin EKİCİ2, Musa DOĞAN3 1Department of Biology, Faculty of Arts and Sciences, Namık Kemal University, 59030, Tekirdağ, Turkey. 2Department of Landscape Architecture, Faculty of Fine Arts, Design and Architecture, Namık Kemal University, 59030, Tekirdağ, Turkey. 3Department of Biological Sciences, Faculty of Arts and Sciences, Middle East Technical University, Ankara, Turkey. *Corresponding author: [email protected] Abstract: A new subspecies Aegilops triuncialis L. subsp. bozdagensis Cabi & Doğan, is described and illustrated. This new subspecies is confined to Denizli, Acıpayam, Bozdağ in southwestern Anatolia. It differs from the other two subspecies of Ae. triuncialis subsp. triuncialis and Ae. triuncialis subsp. persica, by its unawned glumes of the lateral spikelets. Concerning the new subspecies, IUCN red list category, distribution map, notes on its biogeography and ecology are given. An identification key of the subspecies of Ae. triuncialis is also provided. Keywords: Aegilops, Poaceae, New subspecies, Turkey. Introduction 2009 and collected a large number of specimens for The genus Aegilops L. consists of ca. 25 species in the revising the genus Aegilops. In addition, population size, world. It constitutes the primary and secondary gene pool phenological traits and ecological preferences of the for cultivated wheats (van Slageren, 1994; Cabi, 2010). species in the genus were observed during the field Species in the genus are distributed in Southwest and studies. Particular attention was paid to Aegilops Central Asia and throughout the Mediterranean basin. A specimens collected from Bozdağ Mountain, Southwest primary center of diversity of the Aegilops is considered Anatolia (B2 Denizli sensu Davis, 1965) in 2007.