Taxonomy, Morphology and Palynology of Aegilops Vavilovii (Zhuk.) Chennav
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Genome Sequence of the Progenitor of the Wheat D Genome Aegilops Tauschii Ming-Cheng Luo1*, Yong Q
OPEN LETTER doi:10.1038/nature24486 Genome sequence of the progenitor of the wheat D genome Aegilops tauschii Ming-Cheng Luo1*, Yong Q. Gu2*, Daniela Puiu3*, Hao Wang4,5,6*, Sven O. Twardziok7*, Karin R. Deal1, Naxin Huo1,2, Tingting Zhu1, Le Wang1, Yi Wang1,2, Patrick E. McGuire1, Shuyang Liu1, Hai Long1, Ramesh K. Ramasamy1, Juan C. Rodriguez1, Sonny L. Van1, Luxia Yuan1, Zhenzhong Wang1,8, Zhiqiang Xia1, Lichan Xiao1, Olin D. Anderson2, Shuhong Ouyang2,8, Yong Liang2,8, Aleksey V. Zimin3, Geo Pertea3, Peng Qi4,5, Jeffrey L. Bennetzen6, Xiongtao Dai9, Matthew W. Dawson9, Hans-Georg Müller9, Karl Kugler7, Lorena Rivarola-Duarte7, Manuel Spannagl7, Klaus F. X. Mayer7,10, Fu-Hao Lu11, Michael W. Bevan11, Philippe Leroy12, Pingchuan Li13, Frank M. You13, Qixin Sun8, Zhiyong Liu8, Eric Lyons14, Thomas Wicker15, Steven L. Salzberg3,16, Katrien M. Devos4,5 & Jan Dvořák1 Aegilops tauschii is the diploid progenitor of the D genome of We conclude therefore that the size of the Ae. tauschii genome is about hexaploid wheat1 (Triticum aestivum, genomes AABBDD) and 4.3 Gb. an important genetic resource for wheat2–4. The large size and To assess the accuracy of our assembly, sequences of 195 inde- highly repetitive nature of the Ae. tauschii genome has until now pendently sequenced and assembled AL8/78 BAC clones8, which precluded the development of a reference-quality genome sequence5. contained 25,540,177 bp in 2,405 unordered contigs, were aligned to Here we use an array of advanced technologies, including ordered- Aet v3.0. Five contigs failed to align and six extended partly into gaps, clone genome sequencing, whole-genome shotgun sequencing, accounting for 0.25% of the total length of the contigs. -
Evaluation of Agro-Morphological Diversity in Wild Relatives of Wheat Collected in Iran
J. Agr. Sci. Tech. (2017) Vol. 19: 943-956 Evaluation of Agro-Morphological Diversity in Wild Relatives of Wheat Collected in Iran A. Pour-Aboughadareh1*, J. Ahmadi1, A. A. Mehrabi2, M. Moghaddam3, and A. Etminan4 ABSTRACT In this study, a core collection of 180 Aegilops and Triticum accessions belonging to six diploid (T. boeoticum Bioss., T. urartu Gandilyan., Ae. speltoides Tausch., Ae. tauschii Coss., Ae. caudata L. and Ae. umbellulata Zhuk.), five tetraploid (T. durum, Ae. neglecta Req. ex Bertol., Ae. cylindrica Host. and Ae. crassa Boiss) and one hexaploid (T. aestivum L.) species collected from different regions of Iran were evaluated using 20 agro- morphological characters. Statistical analysis showed significant differences among accessions. The Shannon-Weaver (HʹSW) and Nei’s (HʹN) genetic diversity indices disclosed intermediate to high diversity for most characters in both Aegilops and Triticum core sets. In factor analysis, the first five components justified 82.17% of the total of agro- morphological variation. Based on measured characters, the 180 accessions were separated into two major groups by cluster analysis. Furthermore, based on the 2D-plot generated using two discriminant functions, different species were separated into six groups, so that distribution of species accorded with their genome construction. Overall, our results revealed considerable levels of genetic diversity among studied Iranian Aegilops and Triticum accessions, which can open up new avenues for rethinking the connections between wild relatives to explore valuable agronomic traits for the improvement and adaptation of wheat. Keywords: Aegilops, Multivariate analysis, Phenotypic diversity, Triticum. INTRODUCTION traits, such as disease- or pest-resistance and even yield improvement. -
Nature Conservation
J. Nat. Conserv. 11, – (2003) Journal for © Urban & Fischer Verlag http://www.urbanfischer.de/journals/jnc Nature Conservation Constructing Red Numbers for setting conservation priorities of endangered plant species: Israeli flora as a test case Yuval Sapir1*, Avi Shmida1 & Ori Fragman1,2 1 Rotem – Israel Plant Information Center, Dept. of Evolution, Systematics and Ecology,The Hebrew University, Jerusalem, 91904, Israel; e-mail: [email protected] 2 Present address: Botanical Garden,The Hebrew University, Givat Ram, Jerusalem 91904, Israel Abstract A common problem in conservation policy is to define the priority of a certain species to invest conservation efforts when resources are limited. We suggest a method of constructing red numbers for plant species, in order to set priorities in con- servation policy. The red number is an additive index, summarising values of four parameters: 1. Rarity – The number of sites (1 km2) where the species is present. A rare species is defined when present in 0.5% of the area or less. 2. Declining rate and habitat vulnerability – Evaluate the decreasing rate in the number of sites and/or the destruction probability of the habitat. 3. Attractivity – the flower size and the probability of cutting or exploitation of the plant. 4. Distribution type – scoring endemic species and peripheral populations. The plant species of Israel were scored for the parameters of the red number. Three hundred and seventy (370) species, 16.15% of the Israeli flora entered into the “Red List” received red numbers above 6. “Post Mortem” analysis for the 34 extinct species of Israel revealed an average red number of 8.7, significantly higher than the average of the current red list. -
The Conservation of Rare, Threatened Species and Types of Vegetation in Armenia
THE CONSERVATION OF RARE, THREATENED SPECIES AND TYPES OF VEGETATION IN ARMENIA by E. TS. GABRIELIAN* Abstract GABRIELIAN, E. Ts. (1981). The conservation of rare, threatened species and ty- pes of vegetation in Armenia. Actas III Congr. OPTIMA. AnaUs Jard. Bot. Madrid 37 (2): 773-778. After giving the main geologic, geographic and climatic features of Armenia, the new botanical discoveries for the world science during the last years are enume- rated. The main types of vegetation are briefly described and also the species of interest in agriculture. About 100 species are threatened with extinction, nume- rous national parks being created for their protection. Resumen GABRIELIAN, E. TS. (1981). Conservation de especies y tipos de vegetacion raros y amenazados en Armenia. Adas III Congr. OPTIMA. Andes lard Bot Madrid 37 (2): 773-778 (En ingles). Se da cuenta de las caracteristicas geologicas, geograficas y climaticas que defi- nen Armenia, enumerando los nuevos hallazgos floristicos. Se describen somera- mente los principales tipos de vegetacion natural y las especies mas utilizadas en agricultura. Alrededor de un centenar de especies se encuentran en peligro de extincion, existiendo numerosos parques nacionales para su conservation. The conservation of nature, the concern for a rational utilization of its resources has developed into a serious problem of world-wide signifi- cance. The rapid growth of industry has greatly affected man's environ- ment. This is particularly true in mountainous regions where all the dis- turbance processes bearing on the ecosystems are much more intense than in low-lying areas. The mountainous regions form a sort of islands against the back- ground of low-lying areas. -
Flora Survey on Hiltaba Station and Gawler Ranges National Park
Flora Survey on Hiltaba Station and Gawler Ranges National Park Hiltaba Pastoral Lease and Gawler Ranges National Park, South Australia Survey conducted: 12 to 22 Nov 2012 Report submitted: 22 May 2013 P.J. Lang, J. Kellermann, G.H. Bell & H.B. Cross with contributions from C.J. Brodie, H.P. Vonow & M. Waycott SA Department of Environment, Water and Natural Resources Vascular plants, macrofungi, lichens, and bryophytes Bush Blitz – Flora Survey on Hiltaba Station and Gawler Ranges NP, November 2012 Report submitted to Bush Blitz, Australian Biological Resources Study: 22 May 2013. Published online on http://data.environment.sa.gov.au/: 25 Nov. 2016. ISBN 978-1-922027-49-8 (pdf) © Department of Environment, Water and Natural Resouces, South Australia, 2013. With the exception of the Piping Shrike emblem, images, and other material or devices protected by a trademark and subject to review by the Government of South Australia at all times, this report is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. All other rights are reserved. This report should be cited as: Lang, P.J.1, Kellermann, J.1, 2, Bell, G.H.1 & Cross, H.B.1, 2, 3 (2013). Flora survey on Hiltaba Station and Gawler Ranges National Park: vascular plants, macrofungi, lichens, and bryophytes. Report for Bush Blitz, Australian Biological Resources Study, Canberra. (Department of Environment, Water and Natural Resources, South Australia: Adelaide). Authors’ addresses: 1State Herbarium of South Australia, Department of Environment, Water and Natural Resources (DEWNR), GPO Box 1047, Adelaide, SA 5001, Australia. -
1501 Taxonomic Revision of the Genus Psathyrostachys Nevski (Poaceae
AJCS 5(12):1501-1507 (2011) ISSN:1835-2707 Taxonomic revision of the genus Psathyrostachys Nevski (Poaceae: Triticeae) in Turkey Evren Cabi 1*, Musa Do ğan 2, Ersin Karabacak 3 1Atatürk University, Faculty of Science, Department of Biology, 25240, Erzurum, TURKEY 2Middle East Technical University, Faculty of Arts and Sciences, Department of Biological Sciences, 06531, Ankara, TURKEY 3Çanakkale Onsekiz Mart University, Faculty of Arts and Sciences, Department of Biology, 17020, Çanakkale, TURKEY *Corresponding author: [email protected] Abstract In this study, the genus Psathyrostachys Nevski is revised in Turkey. Furthermore multivariate analysis have been carried out in order to understand the delimitation of the taxa of Psathyrostachys. For this reason, 20 quantitative, qualitative and multi-state morphological characters were scored for the accessions representing 10 populations of the genus. The data were subjected to numerical taxonomic analysis. The results showed that the genus is represented by 3 species one of which is new species and the other one is a new record for Turkey. An account of 3 species and 4 subspecies recognized in the genus is given including the genus description, a key for the species as well as the subspecies, species descriptions, flowering times, habitats, altitudes, type citations, distributions, phytogeography and their conservation status. However, three new taxa, namely P. narmanica sp. nov ., P. fragilis subsp. artvinense subsp. nov. and P. daghestanica subsp erzurumica subsp. nov. are described and illustrated for the first time. Keywords: Poaceae, Psathyrostachys , revision, Turkey. Introduction The genus Psathyrostachys Nevski (Poaceae; Triticeae) is a anatomical studies have also been done on certain grass small, well-defined, perennial genus comprising only eight genera (Do ğan, 1988, 1991, 1992, 1997; Cabi and Do ğan, species (Baden 1991). -
JABG25P097 Barker
JOURNAL of the ADELAIDE BOTANIC GARDENS AN OPEN ACCESS JOURNAL FOR AUSTRALIAN SYSTEMATIC BOTANY flora.sa.gov.au/jabg Published by the STATE HERBARIUM OF SOUTH AUSTRALIA on behalf of the BOARD OF THE BOTANIC GARDENS AND STATE HERBARIUM © Board of the Botanic Gardens and State Herbarium, Adelaide, South Australia © Department of Environment, Water and Natural Resources, Government of South Australia All rights reserved State Herbarium of South Australia PO Box 2732 Kent Town SA 5071 Australia © 2012 Board of the Botanic Gardens & State Herbarium, Government of South Australia J. Adelaide Bot. Gard. 25 (2011) 97–103 © 2012 Department of Environment, Water and Natural Resources, Govt of South Australia Name changes associated with the South Australian census of vascular plants for the calendar year 2011 R.M. Barker & P.J. Lang and the staff and associates of the State Herbarium of South Australia State Herbarium of South Australia, DENR Science Resource Centre, P.O. Box 2732, Kent Town, South Australia 5071 Email: [email protected]; [email protected] Keywords: Census, plant list, new species, introductions, weeds, native species, nomenclature, taxonomy. The following tables show the changes, and the phrase names in Eremophila, Spergularia, Caladenia reasons why they were made, in the census of South and Thelymitra being formalised, e.g. Eremophila sp. Australian vascular plants for the calendar year 2011. Fallax (D.E.Symon 12311) was the informal phrase The census is maintained in a database by the State name for the now formally published Eremophila fallax Herbarium of South Australia and projected on the Chinnock. -
A Comparative Study of Chromosome Morphology Among Some Accessions of Aegilops Crassa
African Journal of Biotechnology Vol. 9(7), pp. 996-1000, 15 February, 2010 Available online at http://www.academicjournals.org/AJB DOI: 10.5897/AJB09.243 ISSN 1684–5315 © 2010 Academic Journals Full Length Research Paper A comparative study of chromosome morphology among some accessions of Aegilops crassa Hatami-Maleki Hamid 1, Samizadeh Habibollah 2, Asghari-Zakaria Rasool 3, Moshtaghi Nasrin 4 and Fazeli-Sangari Esmaeil 4 1Department of Agriculture and Plant Breeding, Faculty of Agriculture, Maragheh University, Maragheh, Iran. 2Department of Agriculture, Faculty of Agriculture, Guilan University, Rasht, Iran. 3Department of Agriculture and Plant Breeding, Faculty of Agriculture, Mohaghegh Ardebili University, Ardebil, Iran. 4Department of Biotechnology, Faculty of Agriculture, Ferdowsi University of Mashhad, Mashhad, Iran Accepted 10 April, 2009 In this study karyotype and chromosome characteristics of the nine accessions of Aegilops crassa species obtained from gene bank of Seed and Plant Improvement Research Institute (SPII) of Iran and one accession collected by authors were inspected. Aceto-iron-hematoxilin staining method was used to stain chromosomes. For each accession, chromosome characteristics including long and short arms, chromosome lengths, arm ratio index and relative chromosome lengths were measured using micro measure 3.3 software. Results revealed that all of the studied accessions were tetraploid (2n = 4x = 28) and consisted of 13 pairs of metacentric and one pair of submetacentric chromosomes, of which two pairs were satellite chromosomes. Karyotype formula for these accessions were 13 m + 1 sm. Arm ratio index value of chromosomes ranged from 1.11 in chromosome number 6 to 1.77 in chromosome number 12. The B chromosomes were not seen in any of the accessions. -
Habitats Change in Ceylanpinar State's Farm and the Dangerous Classes of Plants
International Journal of Science and Research (IJSR) ISSN: 2319-7064 Index Copernicus Value (2016): 79.57 | Impact Factor (2017): 7.296 Habıtats Change ın Ceylanpınar State’s Farm and the Dangerous Classes of Plants (Şanlıurfa-Turkey) Mustafa ASLAN2 1, 2Department of Biology, Faculty of Education, Harran University, 63510 Osmanbey Campus, Şanlıurfa-Turkey. Abstract: The natural flora of Ceylanpınar State Farm was studied in the years 2014 and 2015 before cultivation. During the floristic surveys, 146 species of 99 genera belonging to 18 families were recorded. 28 plant species among them are in threatened categories. Of these plants 13 are endemic and 15 are rare plants. However, the region of interest in this study has not been studied extensively and the habitats of this region have been constantly changing. In the natural flora of the region, rare and endemic plant species have been defined and their threat categories and the factors threatening these species have been determined. Keywords: Ceylanpınar State Farm, natural flora of Ceylanpınar,, rare and endemic plant species, threat categories of plants species 1. Introduction highest number of species are Astragalus 7, Bromus 5, Avena 5, Onobrychis 3, Trifolium 3 and Salvia 3 (Adigüzel Accelerated industrialization and rapid increase in human et.al 2002). population have had adverse effects on natural environments. As a result, human beings as well as the other livings have been affected. Nowadays, the environmental issues are no longer confined in national borders but regarded in international platforms. The countries of the world have assembled in many occasions to discuss the issues on environmental problems. -
Molecular Phylogeny of the Genus Triticum L
Comparative and evolutionary genomics and proteomics 147 Chapter # MOLECULAR PHYLOGENY OF THE GENUS TRITICUM L. Golovnina K.1, Glushkov S.*1, Blinov A.1, Mayorov V.2, Adkison L.2 , Goncharov N.1 1 Institute of Cytology and Genetics, SB RAS, Novosibirsk, 630090, Russia; 2 Mercer University School of Medicine, Macon, USA * Corresponding author: e-mail: [email protected] Key words: wheat, Aegilops, molecular evolution, plasmon and B genome inheritance SUMMARY Motivation: The genus Triticum L. includes the major cereal crop, common or bread wheat (hexaploid Triticum aestivum L.), and other important cultivated species. Wheat has emerged as a classic polyploid model and a significant role of polyploidy as a widespread evolutionary strategy in angiosperms is known. Research on wheat phylogeny has contributed to the understanding of this important phenomenon, but there are still discrepancies and deficiencies in information. Results: Here, we conducted a phylogenetic analysis of all known wheat species and the closely related Aegilops species. This analysis was based on chloroplast matK gene comparison along with trnL intron sequences of some species. Polyploid wheat species are successfully divided only into two groups – Emmer (Dicoccoides and Triticum sections) and Timopheevii (Timopheevii section). Results reveal a strictly maternal plastid inheritance of all synthetic wheat amphyploids included in the study. Moreover, a concordance of chloroplast origin with the definite nuclear genomes of polyploid species that were inherited at the last hybridization events was found. This fact allows the most probable donor of the certain nuclear genome and plasmon at the same time to be determined. This suggests that there were two ancestor representatives of Aegilops speltoides that participated in the speciation of polyploid wheats with B and G genome in their genome composition. -
Resistance in Bread Wheat (Triticum Aestivum L.) Accession Citr 2401
Genetics of Russian wheat aphid (Diuraphis noxia) resistance in bread wheat (Triticum aestivum L.) accession CItr 2401 By THANDEKA NOKUTHULA SIKHAKHANE Submitted in accordance with the requirements for the degree of MASTER OF SCIENCE in the subject LIFE SCIENCES at the UNIVERSITY OF SOUTH AFRICA SUPERVISOR : Prof T.J. Tsilo CO-SUPERVISOR : Dr V.L. Tolmay JANUARY 2017 DECLARATION Name: ______________________________________________________ Student number: ______________________________________________________ Degree: ______________________________________________________ Exact wording of the title of the dissertation or thesis as appearing on the copies submitted for examination: Genetics of Russian wheat aphid (Diuraphis noxia) resistance in bread wheat (Triticum aestivum L.) accession CItr 2401 I declare that the above dissertation/thesis is my own work and that all the sources that I have used or quoted have been indicated and acknowledged by means of complete references. ________________________ _____________________ SIGNATURE DATE STUDENT NUMBER: 57652538 i ACKNOWLEDGEMENTS I would like to extend my sincere appreciation and gratitude to: My supervisors, Prof Toi Tsilo and Dr Vicki Tolmay for always being there for me whenever I required assistance, for teaching and grooming me, The Agricultural Research Council and the National Research Foundation for funding, Dr Astrid Jankielsohn, for all the RWA information she shared with me and her images and figures she allowed me to use, Dr Scott Sydenham, for all the molecular study information, -
ITCHGRASS (Rottboellia Cochinchinensis) from COSTA RICA1
Molecular basis for resistance to fluazifop-P-butyl in itchgrass ... 143 MOLECULAR BASIS FOR RESISTANCE TO FLUAZIFOP-P-BUTYL IN ITCHGRASS (Rottboellia cochinchinensis) FROM COSTA RICA1 Base Molecular para Resistência a Fluazifop-P-Butyl em Capim-Camalote (Rottboellia cochinchinensis) da Costa Rica CASTILLO-MATAMOROS, R.2, BRENES-ANGULO, A.2, HERRERA-MURILLO, F.3, and GÓMEZ-ALPÍZAR. L.2 ABSTRACT - Rottboellia cochinchinensis is an annual grass weed species known as itchgrass, or “caminadora” in America´s Spanish speaking countries, and has become a major and troublesome weed in several crops. The application of fluazifop-P-butyl at recommended rates (125 g a.i. ha-1) was observed to be failing to control itchgrass in a field in San José, Upala county, Alajuela province, Costa Rica. Plants from the putative resistant R. cochinchinensis population survived fluazifop-P-butyl when treated with 250 g a.i. ha-1 (2X label rate) at the three- to four-leaf stage under greenhouse conditions. PCR amplification and sequencing of partial carboxyl transferase domain (CT) of the acetyl-CoA carboxylase (ACCase) gene were used to determine the molecular mechanism of resistance. A single non-synonymous point mutation from TGG (susceptible plants) to TGC (putative resistant plants) that leads to a Trp-2027-Cys substitution was found. This Trp-2027-Cys mutation is known to confer resistance to all aryloxyphenoxyproprionate (APP) herbicides to which fluazifop-P-butyl belongs. To the best of our knowledge, this is the first report of fluazifop-P-butyl resistance and a mutation at position 2027 for a Costa Rican R. cochinchinensis population.