Topological Model on the Inductive Effect in Alkyl Halides Using Local Quantum Similarity and Reactivity Descriptors in the Density Functional Theory
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Inductive Effect
Dr Anju K. Gupta Associate Professor Department of Chemistry A.N. College, Patna Lecture note for B.Sc. (I) Subsidiary Inductive Effect If a covalent bond is formed between atoms having similar electronegativity, the bonding electrons will be shared equally between the two atoms. For example, in hydrogen molecule, the two hydrogen atoms have identical electronegativities. Therefore, the electron pair is shared equally between the two hydrogen atoms and so the molecular orbital (σ-bond) will be symmetrically distributed. Similarly, if we consider a chlorine molecule, the molecular orbital (σ- bond) formed between the two identical chlorine atoms is symmetrically distributed. This type of bond is called a non-polar covalent bond. However, if we consider a hydrogen chloride molecule, the electron pair is not equally shared between hydrogen and chlorine because chlorine has a greater electronegativity than hydrogen. Therefore, the electron pair shifts towards the more electronegative atom. This causes polarization in the bond in which the more electronegative atom chlorine acquires a partial positive charge. This type of bond in which unequal sharing of electron pair between two atoms of different electronegativities are involved is called a polar covalent bond. The atom which has a greater share of the paired electrons is given a symbol δ- and the atom with a smaller share is given a symbol δ+. Thus, a polar covalent bond can be represented as: 1 Dr Anju K. Gupta Associate Professor Department of Chemistry A.N. College, Patna Lecture note for B.Sc. (I) Subsidiary Consider a chain of carbon atoms such as C4—C3—C2—C1—X with an atom X at the terminal having higher electronegativity than carbon. -
Understanding Nonplanarity in Metallabenzene Complexes
1986 Organometallics 2007, 26, 1986-1995 Understanding Nonplanarity in Metallabenzene Complexes Jun Zhu, Guochen Jia,* and Zhenyang Lin* Department of Chemistry, The Hong Kong UniVersity of Science and Technology, Clear Water Bay, Kowloon, Hong Kong, People’s Republic of China ReceiVed February 11, 2007 The nonplanarity found in metallabenzene complexes has been investigated theoretically via density functional theory (DFT) calculations. A metallabenzene has four occupied π molecular orbitals (8 π electrons) instead of three that benzene has. Our electronic structure analyses show that the extra occupied π molecular orbital, which is the highest occupied molecular orbital (HOMO) in many metallabenzenes, has antibonding interactions between the metal center and the metal-bonded ring-carbon atoms, providing the electronic driving force toward nonplanarity. Calculations indicate that the electronic driving force toward nonplanarity, however, is relatively small. Therefore, other factors such as steric effects also play important roles in determining the planarity of these metallabenzene complexes. In this paper, how the various electronic and steric factors interplay has been discussed. Introduction benzene complexes. For example, the formation mechanism and chemical reactivity of metallabenzene complexes have been Metallabenzenes, organometallic compounds formed by extensively studied.17 formal replacement of a CH group in benzene by an isolobal In the studies of metallabenzene complexes, a central issue transition metal fragment, were first considered theoretically by concerns the π-conjugation of the six-membered metal-contain- Hoffman et al. in 1979.1 Since the isolation of the first stable 2 ing ring. Indeed, it is true that metallabenzene complexes are osmabenzenes by Roper’s group in 1982, metallabenzene highly conjugated in view of the fact that the single-double complexes have attracted considerable interest over the last bond alternation is insignificant in the six-membered metal- quarter century. -
Rational Design of Small Molecule Fluorescent Probes for Biological Applications
Organic & Biomolecular Chemistry Rational Design of Small Molecule Fluorescent Probes for Biological Applications Journal: Organic & Biomolecular Chemistry Manuscript ID OB-REV-06-2020-001131.R1 Article Type: Review Article Date Submitted by the 13-Jul-2020 Author: Complete List of Authors: Jun, Joomyung; University of Pennsylvania, Chemistry; Massachusetts Institute of Technology, Chemistry Chenoweth, David; University of Pennsylvania, Department of Chemistry Petersson, E.; University of Pennsylvania, Chemistry Page 1 of 16 Organic & Biomolecular Chemistry ARTICLE Rational Design of Small Molecule Fluorescent Probes for Biological Applications a,b a a,c Received 00th January 20xx, Joomyung V. Jun, David M. Chenoweth* and E. James Petersson* Accepted 00th January 20xx Fluorescent small molecules are powerful tools for visualizing biological events, embodying an essential facet of chemical DOI: 10.1039/x0xx00000x biology. Since the discovery of the first organic fluorophore, quinine, in 1845, both synthetic and theoretical efforts have endeavored to “modulate” fluorescent compounds. An advantage of synthetic dyes is the ability to employ modern organic chemistry strategies to tailor chemical structures and thereby rationally tune photophysical properties and functionality of the fluorophore. This review explores general factors affecting fluorophore excitation and emission spectra, molar absorption, Stokes shift, and quantum efficiency; and provides guidelines for chemist to create novel probes. Structure- property relationships concerning the substituents are discussed in detail with examples for several dye families. Then, we present a survey of functional probes based on PeT, FRET, and environmental or photo-sensitivity, focusing on representative recent work in each category. We believe that a full understanding of dyes with diverse chemical moieties enables the rational design of probes for the precise interrogation of biochemical and biological phenomena. -
CONCISE STUDY NOTES for BG 4Th Semester (UNIT: Amines and Heterocyclic Compounds)
CONCISE STUDY NOTES FOR BG 4th Semester (UNIT: Amines and Heterocyclic Compounds) Syllabus Amines: Classification and factors affecting basicity of amines. Mechanistic details (wherever applicable) of methods of formation of alkyl and arylamines through reduction of nitro compounds and nitriles. Gabriel-Phthalamide reaction and Hofmann rearrangement. Mechanisms involved in the formation and reactions of arenediazonium salts including Azo coupling. Heterocyclic compounds bearing one nitrogen atom: Stuctural features of pyrrole, pyrrolidine, pyridine and piperidine and comparative account of their basic strength. Aromaticity and electrophilic substitution reactions of pyrrole and their comparison with those of furan and thiophene.Mechanisms involved in the preparations of Indole and quinoline using Fischer-Indole and Bishlier-Napierlaski syntheses. Amines: Their classification Alkyl, aryl and ar-alkyl derivatives of ammonia are known as amines General formula is RNH2, R2NH, R3NH, where R can be any alkyl, aryl or aralkyl group. Amines are classified in to primary, secondary and tertiary amines depending upon the number of Hydrogen atoms in ammonia replaced by alkyl or aryl group. If one of hydrogen atom in NH3 is replaced by alkyl or aryl group, the derivative of ammonia so obtained is known as primary amine, if two hydrogen atoms in ammonia are replaced by alkyl, aryl or ar-alkyl groups, the derivative obtained is known as secondary amine, while as if all H atoms in ammonia are replaced by alkyl aryl or aralkyl groups, a tertiaty amine is obtained as shown below: The R groups can be alkyl, aryl or aralkyl groups. Further a secondary or tertiary amine may contain same or different R groups. -
The Inductive Effect in Organic Chemistry Comments Upon Models: C
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Faculty Publications -- Chemistry Department Published Research - Department of Chemistry 2019 The nducI tive Effect in Organic Chemistry Charles A. Kingsbury University of Nebraska-Lincoln, [email protected] Follow this and additional works at: http://digitalcommons.unl.edu/chemfacpub Part of the Analytical Chemistry Commons, Medicinal-Pharmaceutical Chemistry Commons, and the Other Chemistry Commons Kingsbury, Charles A., "The nductI ive Effect in Organic Chemistry" (2019). Faculty Publications -- Chemistry Department. 155. http://digitalcommons.unl.edu/chemfacpub/155 This Article is brought to you for free and open access by the Published Research - Department of Chemistry at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Faculty Publications -- Chemistry Department by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. The Inductive Effect in Organic Chemistry Comments upon Models: C. A. Kingsbury Department of Chemistry University of Nebraska Lincoln, NE 68588-0304 Email: [email protected] Abstract: The subtle difference between the successive polarization model and the flow of electrons through sigma bonds is explored, as well as the alternating charge model of Pople and the pervasive field model. The present paper is concerned with the ability of alkyl groups to serve as sigma inductive electron donors. The “inductive effect” remains an icon of chemical education and chemical thought. It is appreciated by students as a concept easily grasped, and it is a concept that is well liked by instructors as easy and rapid to present. However, the history of the “inductive effect,” in its various incarnations is hardly as smooth as these complacent attitudes might suggest. -
Carboxylic Acids
CARBOXYLIC ACIDS 1 Carboxylic Acids Introduction Carboxylic acids are organic compounds containing the carboxyl group (-COOH), wherein the hydroxyl group (-OH) is directly attached to the carbonyl (C=O) group. Carboxylic acids constitute one of the most frequently encountered classes of organic compounds in nature. 2 Natural Carboxylic Acids A great many carboxylic acids are encountered in nature, mostly, in fruits. Indeed carboxylic acids were among the first class of organic compounds to ever be isolated from nature. Edible carboxylic acids found in citrous fruits and fermented milk generally have sharp flavours. 3 Nomenclature of Carboxylic Acids The common names of some basic carboxylic acids are derived from Latin names that indicate the first original natural source of the carboxylic acid. Structure of Acid Natural Source Common Name O H C OH Ants (Formica) Formic acid O CH3 C OH Vinegar (Acetum) Acetic acid O CH3CH2 C OH Basic Fat (Propio) Propionic acid O CH3CH2CH2 C OH Rancid butter (Butyrum) Butyric acid Present in aValerian herb Valeric acid O 4 CH3CH2CH2CH2CH2 C OH Goat (Caper) Caproic acid Common Names of Carboxylic Acids The common name of a carboxylic acid (R-COOH) is derived by adding the suffix –ic acid to a prefix representing the chain length of the carboxylic acid. # of Carbons Prefix Common Name of Acid 1 Form- Formic acid 2 Acet- Acetic acid 3 Propion- Propionic acid 4 Butyr- Butyric acid 5 Valer- Valeric acid 6 Capro- Caproic acid Aromatic acid Benzo- Benzoic acid 5 IUPAC Nomenclature of Aliphatic Carboxylic Acids IUPAC names of straight chain aliphatic carboxylic acids are derived by adding the suffix –oic acid to the systematic name of the parent hydrocarbon. -
Principles of Drug Action 1, Spring 2005, Resonance and Induction
Principles Of Drug Action 1, Spring 2005, Resonance and Induction RESONANCE AND INDUCTION TUTORIAL Jack DeRuiter The terms "resonance" and "induction" refer to the electronic effects that atoms or functional groups may have within a compound. These effects are defined below and are dependent on the valence, bonding order and electronegativity of atoms, as well as the molecular geometry. Thus it is important that you understand these concepts prior to reviewing this tutorial. I. INDUCTION Induction or the inductive effect of an atom or functional group is a function of that groups 1). electronegativity, 2). bonding order and charge and 3). position within a structure. Inductive effects refer to those electronic effects of an atom or functional group can contribute through single bonds such as saturated (sp3) carbon atoms! This is very different from resonance effects discussed later in this section. The contribution of electronegativity, bonding order and position toward induction is as follows: Electronegativity: Atoms or functional groups that are electronegative relative to hydrogen such as the halogens, oxygen, nitrogen, etc. may have a negative inductive effect (-I), depending on their bonding order (see the Table below). Thus these atoms withdraw electron density through the single bond structure of a compound and can assist in the stabilization of negative charge that may form in reactions. One such reaction where -I groups can have a stabilizing (enhancing) effect is the ionization of acids. Consider the case of acetic acid, chloroacetic acid and trichloroacetic acid shown below. All three of these compounds can ionize (loss of proton from the carboxyl OH). -
Electronic Effects-I Inductive Effect If a Covalent Bond Is Formed Between
Electronic Effects-I Inductive Effect If a covalent bond is formed between atoms having similar electronegativity, the bonding electrons will be shared equally between the two atoms. For example, in hydrogen molecule, the two hydrogen atoms have identical electronegativities. Therefore, the electron pair is shared equally between the two hydrogen atoms and so the molecular orbital (σ-bond) will be symmetrically distributed. Similarly, if we consider a chlorine molecule, the molecular orbital (σ- bond) formed between the two identical chlorine atoms is symmetrically distributed. This type of bond is called a non-polar covalent bond. When an electron-releasing or an electron- withdrawing species is introduced to a chain of atoms (generally a carbon chain), the corresponding negative or positive charge is relayed through the carbon chain by the atoms belonging to it. This causes a permanent dipole to arise in the molecule and is referred to as the inductive effect 1 H-Cl However, if we consider a hydrogen chloride molecule, the electron pair is not equally shared between hydrogen and chlorine because chlorine has a greater electronegativity than hydrogen. Therefore, the electron pair shifts towards the more electronegative atom. This causes polarization in the bond in which the more electronegative atom chlorine acquires a partial negative charge. This type of bond in which unequal sharing of electron pair between two atoms of different electronegativities are involved is called a polar covalent bond. The atom which has a greater share of the paired electrons is given a symbol δ- and the atom with a smaller share is given a symbol δ+. -
Physical Organic Chemistry
CHM 8304 Physical Organic Chemistry Thermodynamics and kinetics Outline: Isotope effects • see section 8.1 of A&D – experimental approach – primary isotope effect – secondary isotope effect – equilibrium isotope effect – solvent isotope effect – heavy atom isotope effects 2 Thermodynamics and kinetics 1 CHM 8304 Measurement of an isotope effect • performed to determine if a bond changes in a certain way during the rate-limiting step • expressed as a ratio whose numerator is the rate constant measured for the naturally abundant isotope and the denominator is the rate constant measured for the varied isotope – e.g. kH/kD 3 Types of isotope effects • kinetic isotope effects (kie): result from a change in the rate constant of a reaction : – normal effect: ratio > 1 – inverse effect: ratio < 1 – primary isotope effect: when the isotopically substituted bond is cleaved during the rate-limiting step – secondary isotope effect : attributable to a change of hybridation state, not cleavage of bonds • equilibrium isotope effects: result from displacement of an equilibrium 4 Thermodynamics and kinetics 2 CHM 8304 Origin of isotope effects • the origin of all isotope effects is a difference in the frequency of vibrational modes of a substituted molecule with respect to an unsubstituted molecule • it is these vibrational modes that principally affect the shape of the potential energy well on an energy surface 5 Zero point energy • zero point energy (ZPE) is the energy level of the vibrational ground state for most molecules at ambient temperature • -
C. K. Ingold's Development of the Concept of Mesomerism
Bull. Hist, Chem. (1996) 25 C. K. INGOLD'S DEVELOPMENT OF THE CONCEPT OF MESOMERISM Mrtn . Sltzn, rvdn Cll Charles W. Shoppee , in his obituary notice for Sir Chris- G. N. Lewis (1875-1946) provided little leadership topher Kelk Ingold (1893-1970), wrote(1): to the organic chemical community in how to apply his ideas to the prob- ..he was a chemical genius, an excellent physicist, lems of structure, and a talented mathematician, able to employ and to reactivity, and combine all aspects of organic, inorganic, and physi- mechanism. In cal chemistry. 1919 Irving Ingold's enormous output totaling 443 papers covered a Langmuir (1881- vast array of subjects and set the research agenda for 1957) elaborated physical organic chemistry for several decades. His upon the foundation Chemical Reviews paper "Principles of an Electron established by Theory of Organic Reactions(2)" published in I934 was Lewis and intro- for many years the only source for understanding the duced the octet and pioneering work he and other British chemists had done covalent bond con- on the interpretations of reactions mechanisms. This cept into chemical paper will deal with one aspect of his work: his antici- thinking. Through pation of a development of the concept of mesomerism, his many papers and which he derived from both physical and chemical evi- lectures Langmuir dence. Linus Pauling (1901-1995), using quantum me- was to have more of chanics, developed resonance theory at the same time. an impact than G. Ingold realized that the Lewis theory was a first N. Lewis on organic step in relating structure and reactivity, but that it did chemists. -
John William Baker and the Origin of the Baker-Nathan Effect
82 Bull. Hist. Chem., VOLUME 37, Number 2 (2012) JOHN WILLIAM BAKER AND THE ORIGIN OF THE BAKER-NATHAN EFFECT Martin D. Saltzman, Providence College, [email protected] The Baker-Nathan effect was a theory proposed by independent school in west London from 1909-1916. He John William Baker (1898-1967) and Wilfred Samuel was awarded a Royal Scholarship in Chemistry which Nathan (1910-1961) of Leeds University in 1935 to allowed him to enroll at the Imperial College of Science explain certain anomalous results obtained in SN2 reac- and Technology in London. His exceptional aptitude for tions carried out in solution. The explanation produced chemistry was shown by his passing the intermediate by them was expanded to a general type of no-bond exams for the B.Sc. Degree by the end of 1916. In April resonance known as hyperconjugation by Mulliken in 1917 he was conscripted and assigned to the Royal En- papers published in 1939 and 1941 (1). Hyperconjuga- gineers where he was commissioned a Lieutenant. His tion is today defined as the conjugation of polarized major responsibilities were in the area of water purifica- sigma bonds and adjacent pi orbitals. This theory has tion. In May 1918 he was sent to Mesopotamia (now Iraq) been applied to a host of anomalous physical measure- where he was assigned the same duties. He was finally ments such as bond lengths and dipole moments. The demobilized in 1920 and returned to Imperial where he Baker-Nathan effect as it was originally framed is no was awarded his B.Sc. -
Interpretation of Both Electron Pushing and Electron Withdrawing Inductive Effect of Alkyl Groups in Terms of Mulliken–Jaffe’S Charge Coefficient Parameters (B)∗
GENERAL ARTICLE Interpretation of Both Electron Pushing and Electron Withdrawing Inductive Effect of Alkyl Groups in Terms of Mulliken–Jaffe’s Charge Coefficient Parameters (b)∗ Asim K Das Alkyl groups can delocalize both the negative and positive charges through ion (charge)-induced dipole interaction with the polarizable alkyl groups. This charge induced polariza- tion of the alkyl group to delocalize the charge is the origin of ‘inductive effect’ of the alkyl groups. The apparent less effi- ciency in negative charge delocalization compared to positive charge delocalization by a particular alkyl group is attributed Asim K Das is currently a to the less polarizing field strength of the anionic charge. senior Professor of Chemistry Department, Visva Bharati, a Central University, 1. Introduction Santiniketan. His research interest is in the field of ff thermodynamic and kinetic The concept of inductive e ect and its application are the impor- aspects of metal-ligand tant course components of organic chemistry taught at the high interactions. He has authored school and undergraduate level. Inductive effect actually delocal- some advanced level text izes the charge [1, 2]. Depending on the properties of the atoms books on inorganic chemistry, ff bioinorganic chemistry and or groups, they can show electron withdrawing (i.e. –I e ect) or environmental chemistry for electron pushing (i.e. +Ieffect) inductive effect [1, 2]. The +Ief- the undergraduate and fect delocalizes the positive charge while the −Ieffect delocalizes postgraduate students. the negative charge. By considering the inductive effect of the groups or atoms, many important aspects of organic chemistry like the relative stabilities of carbocations and carbanions, acid- base strength, reaction mechanism, etc., are explained [1, 2] in the classrooms, and these are also discussed in all organic textbooks.