ABSTRACT Title of Dissertation: IDENTIFICATION, LIFE HISTORY
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PROTISTAS MARINOS Viviana A
PROTISTAS MARINOS Viviana A. Alder INTRODUCCIÓN plantas y animales. Según este esquema básico, a las plantas les correspondían las características de En 1673, el editor de Philosophical Transac- ser organismos sésiles con pigmentos fotosinté- tions of the Royal Society of London recibió una ticos para la síntesis de las sustancias esenciales carta del anatomista Regnier de Graaf informan- para su metabolismo a partir de sustancias inor- do que un comerciante holandés, Antonie van gánicas (nutrición autótrofa), y de poseer células Leeuwenhoek, había “diseñado microscopios rodeadas por paredes de celulosa. En oposición muy superiores a aquéllos que hemos visto has- a las plantas, les correspondía a los animales los ta ahora”. Van Leeuwenhoek vendía lana, algo- atributos de tener motilidad activa y de carecer dón y otros materiales textiles, y se había visto tanto de pigmentos fotosintéticos (debiendo por en la necesidad de mejorar las lentes de aumento lo tanto procurarse su alimento a partir de sustan- que comúnmente usaba para contar el número cias orgánicas sintetizadas por otros organismos) de hebras y evaluar la calidad de fibras y tejidos. como de paredes celulósicas en sus células. Así fue que construyó su primer microscopio de Es a partir de los estudios de Georg Gol- lente única: simple, pequeño, pero con un poder dfuss (1782-1848) que estos diminutos organis- de magnificación de hasta 300 aumentos (¡diez mos, invisibles a ojo desnudo, comienzan a ser veces más que sus precursores!). Este magnífico clasificados como plantas primarias -
Protist Phylogeny and the High-Level Classification of Protozoa
Europ. J. Protistol. 39, 338–348 (2003) © Urban & Fischer Verlag http://www.urbanfischer.de/journals/ejp Protist phylogeny and the high-level classification of Protozoa Thomas Cavalier-Smith Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK; E-mail: [email protected] Received 1 September 2003; 29 September 2003. Accepted: 29 September 2003 Protist large-scale phylogeny is briefly reviewed and a revised higher classification of the kingdom Pro- tozoa into 11 phyla presented. Complementary gene fusions reveal a fundamental bifurcation among eu- karyotes between two major clades: the ancestrally uniciliate (often unicentriolar) unikonts and the an- cestrally biciliate bikonts, which undergo ciliary transformation by converting a younger anterior cilium into a dissimilar older posterior cilium. Unikonts comprise the ancestrally unikont protozoan phylum Amoebozoa and the opisthokonts (kingdom Animalia, phylum Choanozoa, their sisters or ancestors; and kingdom Fungi). They share a derived triple-gene fusion, absent from bikonts. Bikonts contrastingly share a derived gene fusion between dihydrofolate reductase and thymidylate synthase and include plants and all other protists, comprising the protozoan infrakingdoms Rhizaria [phyla Cercozoa and Re- taria (Radiozoa, Foraminifera)] and Excavata (phyla Loukozoa, Metamonada, Euglenozoa, Percolozoa), plus the kingdom Plantae [Viridaeplantae, Rhodophyta (sisters); Glaucophyta], the chromalveolate clade, and the protozoan phylum Apusozoa (Thecomonadea, Diphylleida). Chromalveolates comprise kingdom Chromista (Cryptista, Heterokonta, Haptophyta) and the protozoan infrakingdom Alveolata [phyla Cilio- phora and Miozoa (= Protalveolata, Dinozoa, Apicomplexa)], which diverged from a common ancestor that enslaved a red alga and evolved novel plastid protein-targeting machinery via the host rough ER and the enslaved algal plasma membrane (periplastid membrane). -
Nanosims and Tissue Autoradiography Reveal Symbiont Carbon fixation and Organic Carbon Transfer to Giant Ciliate Host
The ISME Journal (2018) 12:714–727 https://doi.org/10.1038/s41396-018-0069-1 ARTICLE NanoSIMS and tissue autoradiography reveal symbiont carbon fixation and organic carbon transfer to giant ciliate host 1 2 1 3 4 Jean-Marie Volland ● Arno Schintlmeister ● Helena Zambalos ● Siegfried Reipert ● Patricija Mozetič ● 1 4 2 1 Salvador Espada-Hinojosa ● Valentina Turk ● Michael Wagner ● Monika Bright Received: 23 February 2017 / Revised: 3 October 2017 / Accepted: 9 October 2017 / Published online: 9 February 2018 © The Author(s) 2018. This article is published with open access Abstract The giant colonial ciliate Zoothamnium niveum harbors a monolayer of the gammaproteobacteria Cand. Thiobios zoothamnicoli on its outer surface. Cultivation experiments revealed maximal growth and survival under steady flow of high oxygen and low sulfide concentrations. We aimed at directly demonstrating the sulfur-oxidizing, chemoautotrophic nature of the symbionts and at investigating putative carbon transfer from the symbiont to the ciliate host. We performed pulse-chase incubations with 14C- and 13C-labeled bicarbonate under varying environmental conditions. A combination of tissue autoradiography and nanoscale secondary ion mass spectrometry coupled with transmission electron microscopy was used to fi 1234567890();,: follow the fate of the radioactive and stable isotopes of carbon, respectively. We show that symbiont cells x substantial amounts of inorganic carbon in the presence of sulfide, but also (to a lesser degree) in the absence of sulfide by utilizing internally stored sulfur. Isotope labeling patterns point to translocation of organic carbon to the host through both release of these compounds and digestion of symbiont cells. The latter mechanism is also supported by ultracytochemical detection of acid phosphatase in lysosomes and in food vacuoles of ciliate cells. -
Exceptional Species Richness of Ciliated Protozoa in Pristine Intertidal Rock Pools
MARINE ECOLOGY PROGRESS SERIES Vol. 335: 133–141, 2007 Published April 16 Mar Ecol Prog Ser Exceptional species richness of ciliated Protozoa in pristine intertidal rock pools Genoveva F. Esteban*, Bland J. Finlay School of Biological & Chemical Sciences, Queen Mary, University of London, London E1 4NS, UK ABSTRACT: Marine intertidal rock pools can be found almost worldwide but little is known about the microscopic life forms they support, or the significance of regular tidal inundation. With regard to ciliated Protozoa in rock pools, little progress has been achieved since 1948, when the question was first posed as to how a community of ciliates can remain relatively constant in a rock pool that is flushed twice a day. Here we show that local ciliate species richness is very high and that it may per- sist over time. This elevated species richness can be attributed to ciliate immigration with the in- coming tide, and also to the resident ciliate community that withstands tidal flushing. A 15 cm deep intertidal rock-pool no bigger than 1 m2 on the island of St. Agnes (Scilly Islands, UK) contained at least 85 ciliate species, while a 20 cm-deep rock pool with roughly the same area on Bryher (also in the Scilly Islands) yielded 75 species. More than 20% of the global number of described marine inter- stitial ciliate species was recorded from these rock pools. We explore the paradox of a persisting com- munity assembly living in an ecosystem that is physically highly dynamic. KEY WORDS: Marine ciliates · Marine biodiversity · Intertidal rock pools Resale or republication not permitted without written consent of the publisher INTRODUCTION MATERIALS AND METHODS The question of how a community of ciliate species can Sampling sites. -
Free-Living Protozoa in Drinking Water Supplies: Community Composition and Role As Hosts for Legionella Pneumophila
Free-living protozoa in drinking water supplies: community composition and role as hosts for Legionella pneumophila Rinske Marleen Valster Thesis committee Thesis supervisor Prof. dr. ir. D. van der Kooij Professor of Environmental Microbiology Wageningen University Principal Microbiologist KWR Watercycle Institute, Nieuwegein Thesis co-supervisor Prof. dr. H. Smidt Personal chair at the Laboratory of Microbiology Wageningen University Other members Dr. J. F. Loret, CIRSEE-Suez Environnement, Le Pecq, France Prof. dr. T. A. Stenstrom,¨ SIIDC, Stockholm, Sweden Dr. W. Hoogenboezem, The Water Laboratory, Haarlem Prof. dr. ir. M. H. Zwietering, Wageningen University This research was conducted under the auspices of the Graduate School VLAG. Free-living protozoa in drinking water supplies: community composition and role as hosts for Legionella pneumophila Rinske Marleen Valster Thesis submitted in fulfilment of the requirements for the degree of doctor at Wageningen University by the authority of the Rector Magnificus Prof. dr. M.J. Kropff, in the presence of the Thesis Committee appointed by the Academic Board to be defended in public on Monday 20 June 2011 at 11 a.m. in the Aula Rinske Marleen Valster Free-living protozoa in drinking water supplies: community composition and role as hosts for Legionella pneumophila, viii+186 pages. Thesis, Wageningen University, Wageningen, NL (2011) With references, with summaries in Dutch and English ISBN 978-90-8585-884-3 Abstract Free-living protozoa, which feed on bacteria, play an important role in the communities of microor- ganisms and invertebrates in drinking water supplies and in (warm) tap water installations. Several bacteria, including opportunistic human pathogens such as Legionella pneumophila, are able to sur- vive and replicate within protozoan hosts, and certain free-living protozoa are opportunistic human pathogens as well. -
Zoologica Scripta
中国科技论文在线 http://www.paper.edu.cn Zoologica Scripta Molecular phylogeny of three ambiguous ciliate genera: Kentrophoros, Trachelolophos and Trachelotractus (Alveolata, Ciliophora) SHAN GAO,MICHAELA C. STRU¨ DER-KYPKE,KHALED A. S. AL-RASHEID,XIAOFENG LIN &WEIBO SONG Submitted: 12 May 2009 Gao, S., Stru¨der-Kypke, M.C., Al-Rasheid, K.A.S., Lin, X. & Song, W. (2010). Molecular Accepted: 31 October 2009 phylogeny of three ambiguous ciliate genera: Kentrophoros, Trachelolophos and Trachelotractus doi:10.1111/j.1463-6409.2010.00416.x (Alveolata, Ciliophora).—Zoologica Scripta, 39, 305–313. Very few molecular studies on the phylogeny of the karyorelictean ciliates have been car- ried out because data of this highly ambiguous group are extremely scarce. In the present study, we sequenced the small subunit ribosomal RNA genes of three morphospecies rep- resenting two karyorelictean genera, Kentrophoros, Trachelolophos, and one haptorid, Trache- lotractus, isolated from the South and East China Seas. The phylogenetic trees constructed using Bayesian inference, maximum likelihood, maximum parsimony and neighbor-joining methods yielded essentially similar topologies. The class Karyorelictea is depicted as a monophyletic clade, closely related to the class Heterotrichea. The generic concept of the family Trachelocercidae is confirmed by the clustering of Trachelolophos and Tracheloraphis with high bootstrap support; nevertheless, the order Loxodida is paraphyletic. The transfer of the morphotype Trachelocerca entzi Kahl, 1927 to the class Litostomatea and into the new haptorid genus Trachelotractus, as suggested by previous researchers based on morpho- logical studies, is consistently supported by our molecular analyses. In addition, the poorly known species Parduczia orbis occupies a well-supported position basal to the Geleia clade, justifying the separation of these genera from one another. -
Zoothamnium Ignavum Sp
RESEARCH ARTICLE A Novel Colonial Ciliate Zoothamnium ignavum sp. nov. (Ciliophora, Oligohymeno- phorea) and Its Ectosymbiont Candidatus Navis piranensis gen. nov., sp. nov. from Shallow-Water Wood Falls Lukas Schuster*, Monika Bright University of Vienna, Departmentof Limnology and Bio-Oceanography, Althanstraße 14, A-1090 Vienna, Austria * [email protected] a11111 Abstract Symbioses between ciliate hosts and prokaryote or unicellular eukaryote symbionts are widespread. Here, we report on a novel ciliate species within the genus Zoothamnium Bory de St. Vincent, 1824, isolated from shallow-water sunken wood in the North Adriatic Sea OPEN ACCESS (Mediterranean Sea), proposed as Zoothamnium ignavum sp. nov. We found this ciliate Citation: Schuster L, Bright M (2016) A Novel species to be associated with a novel genus of bacteria, here proposed as “Candidatus Colonial Ciliate Zoothamnium ignavum sp. nov. Navis piranensis” gen. nov., sp. nov. The descriptions of host and symbiont species are (Ciliophora, Oligohymeno-phorea) and Its based on morphological and ultrastructural studies, the SSU rRNA sequences, and in situ Ectosymbiont Candidatus Navis piranensis gen. nov., sp. nov. from Shallow-Water Wood Falls. PLoS ONE hybridization with symbiont-specific probes. The host is characterized by alternate micro- 11(9): e0162834. doi:10.1371/journal.pone.0162834 zooids on alternate branches arising from a long, common stalk with an adhesive disc. Editor: Jonathan H. Badger, National Cancer Three different types of zooids are present: microzooids with a bulgy oral side, roundish to Institute,UNITED STATES ellipsoid macrozooids, and terminal zooids ellipsoid when dividing or bulgy when undividing. Received: June 9, 2016 The oral ciliature of the microzooids runs 1¼ turns in a clockwise direction around the peri- stomial disc when viewed from inside the cell and runs into the infundibulum, where it Accepted: August 29, 2016 makes another ¾ turn. -
Lobban & Schefter 2008
Micronesica 40(1/2): 253–273, 2008 Freshwater biodiversity of Guam. 1. Introduction, with new records of ciliates and a heliozoan CHRISTOPHER S. LOBBAN and MARÍA SCHEFTER Division of Natural Sciences, College of Natural & Applied Sciences, University of Guam, Mangilao, GU 96923 Abstract—Inland waters are the most endangered ecosystems in the world because of complex threats and management problems, yet the freshwater microbial eukaryotes and microinvertebrates are generally not well known and from Guam are virtually unknown. Photo- documentation can provide useful information on such organisms. In this paper we document protists from mostly lentic inland waters of Guam and report twelve freshwater ciliates, especially peritrichs, which are the first records of ciliates from Guam or Micronesia. We also report a species of Raphidiophrys (Heliozoa). Undergraduate students can meaningfully contribute to knowledge of regional biodiversity through individual or class projects using photodocumentation. Introduction Biodiversity has become an important field of study since it was first recognized as a concept some 20 years ago. It includes the totality of heritable variation at all levels, including numbers of species, in an ecosystem or the world (Wilson 1997). Biodiversity encompasses our recognition of the “ecosystem services” provided by organisms, the interconnectedness of species, and the impact of human activities, including global warming, on ecosystems and biodiversity (Reaka-Kudla et al. 1997). Current interest in biodiversity has prompted global bioinformatics efforts to identify species through DNA “barcodes” (Hebert et al. 2002) and to make databases accessible through the Internet (Ratnasingham & Hebert 2007, Encyclopedia of Life 2008). Biodiversity patterns are often contrasted between terrestrial ecosystems, with high endemism, and marine ecosystems, with low endemism except in the most remote archipelagoes (e.g., Hawai‘i), but patterns in Oceania suggest that this contrast may not be so clear as it seemed (Paulay & Meyer 2002). -
Protista (PDF)
1 = Astasiopsis distortum (Dujardin,1841) Bütschli,1885 South Scandinavian Marine Protoctista ? Dingensia Patterson & Zölffel,1992, in Patterson & Larsen (™ Heteromita angusta Dujardin,1841) Provisional Check-list compiled at the Tjärnö Marine Biological * Taxon incertae sedis. Very similar to Cryptaulax Skuja Laboratory by: Dinomonas Kent,1880 TJÄRNÖLAB. / Hans G. Hansson - 1991-07 - 1997-04-02 * Taxon incertae sedis. Species found in South Scandinavia, as well as from neighbouring areas, chiefly the British Isles, have been considered, as some of them may show to have a slightly more northern distribution, than what is known today. However, species with a typical Lusitanian distribution, with their northern Diphylleia Massart,1920 distribution limit around France or Southern British Isles, have as a rule been omitted here, albeit a few species with probable norhern limits around * Marine? Incertae sedis. the British Isles are listed here until distribution patterns are better known. The compiler would be very grateful for every correction of presumptive lapses and omittances an initiated reader could make. Diplocalium Grassé & Deflandre,1952 (™ Bicosoeca inopinatum ??,1???) * Marine? Incertae sedis. Denotations: (™) = Genotype @ = Associated to * = General note Diplomita Fromentel,1874 (™ Diplomita insignis Fromentel,1874) P.S. This list is a very unfinished manuscript. Chiefly flagellated organisms have yet been considered. This * Marine? Incertae sedis. provisional PDF-file is so far only published as an Intranet file within TMBL:s domain. Diplonema Griessmann,1913, non Berendt,1845 (Diptera), nec Greene,1857 (Coel.) = Isonema ??,1???, non Meek & Worthen,1865 (Mollusca), nec Maas,1909 (Coel.) PROTOCTISTA = Flagellamonas Skvortzow,19?? = Lackeymonas Skvortzow,19?? = Lowymonas Skvortzow,19?? = Milaneziamonas Skvortzow,19?? = Spira Skvortzow,19?? = Teixeiromonas Skvortzow,19?? = PROTISTA = Kolbeana Skvortzow,19?? * Genus incertae sedis. -
Classification of the Phylum Ciliophora (Eukaryota, Alveolata)
1! The All-Data-Based Evolutionary Hypothesis of Ciliated Protists with a Revised 2! Classification of the Phylum Ciliophora (Eukaryota, Alveolata) 3! 4! Feng Gao a, Alan Warren b, Qianqian Zhang c, Jun Gong c, Miao Miao d, Ping Sun e, 5! Dapeng Xu f, Jie Huang g, Zhenzhen Yi h,* & Weibo Song a,* 6! 7! a Institute of Evolution & Marine Biodiversity, Ocean University of China, Qingdao, 8! China; b Department of Life Sciences, Natural History Museum, London, UK; c Yantai 9! Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, China; d 10! College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China; 11! e Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystem, 12! Xiamen University, Xiamen, China; f State Key Laboratory of Marine Environmental 13! Science, Institute of Marine Microbes and Ecospheres, Xiamen University, Xiamen, 14! China; g Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, China; h 15! School of Life Science, South China Normal University, Guangzhou, China. 16! 17! Running Head: Phylogeny and evolution of Ciliophora 18! *!Address correspondence to Zhenzhen Yi, [email protected]; or Weibo Song, 19! [email protected] 20! ! ! 1! Table S1. List of species for which SSU rDNA, 5.8S rDNA, LSU rDNA, and alpha-tubulin were newly sequenced in the present work. ! ITS1-5.8S- Class Subclass Order Family Speicies Sample sites SSU rDNA LSU rDNA a-tubulin ITS2 A freshwater pond within the campus of 1 COLPODEA Colpodida Colpodidae Colpoda inflata the South China Normal University, KM222106 KM222071 KM222160 Guangzhou (23° 09′N, 113° 22′ E) Climacostomum No. -
Morphology, Ultrastructure, Genomics, and Phylogeny of Euplotes Vanleeuwenhoeki Sp
www.nature.com/scientificreports OPEN Morphology, ultrastructure, genomics, and phylogeny of Euplotes vanleeuwenhoeki sp. nov. and its ultra‑reduced endosymbiont “Candidatus Pinguicoccus supinus” sp. nov. Valentina Serra1,7, Leandro Gammuto1,7, Venkatamahesh Nitla1, Michele Castelli2,3, Olivia Lanzoni1, Davide Sassera3, Claudio Bandi2, Bhagavatula Venkata Sandeep4, Franco Verni1, Letizia Modeo1,5,6* & Giulio Petroni1,5,6* Taxonomy is the science of defning and naming groups of biological organisms based on shared characteristics and, more recently, on evolutionary relationships. With the birth of novel genomics/ bioinformatics techniques and the increasing interest in microbiome studies, a further advance of taxonomic discipline appears not only possible but highly desirable. The present work proposes a new approach to modern taxonomy, consisting in the inclusion of novel descriptors in the organism characterization: (1) the presence of associated microorganisms (e.g.: symbionts, microbiome), (2) the mitochondrial genome of the host, (3) the symbiont genome. This approach aims to provide a deeper comprehension of the evolutionary/ecological dimensions of organisms since their very frst description. Particularly interesting, are those complexes formed by the host plus associated microorganisms, that in the present study we refer to as “holobionts”. We illustrate this approach through the description of the ciliate Euplotes vanleeuwenhoeki sp. nov. and its bacterial endosymbiont “Candidatus Pinguicoccus supinus” gen. nov., sp. nov. The endosymbiont possesses an extremely reduced genome (~ 163 kbp); intriguingly, this suggests a high integration between host and symbiont. Taxonomy is the science of defning and naming groups of biological organisms based on shared characteristics and, more recently, based on evolutionary relationships. Classical taxonomy was exclusively based on morpho- logical-comparative techniques requiring a very high specialization on specifc taxa. -
Adl S.M., Simpson A.G.B., Lane C.E., Lukeš J., Bass D., Bowser S.S
The Journal of Published by the International Society of Eukaryotic Microbiology Protistologists J. Eukaryot. Microbiol., 59(5), 2012 pp. 429–493 © 2012 The Author(s) Journal of Eukaryotic Microbiology © 2012 International Society of Protistologists DOI: 10.1111/j.1550-7408.2012.00644.x The Revised Classification of Eukaryotes SINA M. ADL,a,b ALASTAIR G. B. SIMPSON,b CHRISTOPHER E. LANE,c JULIUS LUKESˇ,d DAVID BASS,e SAMUEL S. BOWSER,f MATTHEW W. BROWN,g FABIEN BURKI,h MICAH DUNTHORN,i VLADIMIR HAMPL,j AARON HEISS,b MONA HOPPENRATH,k ENRIQUE LARA,l LINE LE GALL,m DENIS H. LYNN,n,1 HILARY MCMANUS,o EDWARD A. D. MITCHELL,l SHARON E. MOZLEY-STANRIDGE,p LAURA W. PARFREY,q JAN PAWLOWSKI,r SONJA RUECKERT,s LAURA SHADWICK,t CONRAD L. SCHOCH,u ALEXEY SMIRNOVv and FREDERICK W. SPIEGELt aDepartment of Soil Science, University of Saskatchewan, Saskatoon, SK, S7N 5A8, Canada, and bDepartment of Biology, Dalhousie University, Halifax, NS, B3H 4R2, Canada, and cDepartment of Biological Sciences, University of Rhode Island, Kingston, Rhode Island, 02881, USA, and dBiology Center and Faculty of Sciences, Institute of Parasitology, University of South Bohemia, Cˇeske´ Budeˇjovice, Czech Republic, and eZoology Department, Natural History Museum, London, SW7 5BD, United Kingdom, and fWadsworth Center, New York State Department of Health, Albany, New York, 12201, USA, and gDepartment of Biochemistry, Dalhousie University, Halifax, NS, B3H 4R2, Canada, and hDepartment of Botany, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada, and iDepartment