Sulphide Ectosymbioses in Shallow Marine Habitats Introduction
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Publication List – Michael Wagner
Publication list – Michael Wagner I have published between 1992 – April 2021 in my six major research fields (nitrification, single cell microbiology, microbiome, wastewater microbiology, endosymbionts, sulfate reduction) 269 papers and more than 30 book chapters. According to Scopus (April 2021) my publications have been cited 40,640 (ISI: 37,997; Google Scholar: 59,804) and I have an H-index of 107 (ISI: 103; Google Scholar: 131). Seven of my publications appeared in Nature (plus a News & Views piece), three in Science, 13 in PNAS (all direct submission) and two in PLoS Biology. More info about my publications can be found at: Scopus: https://www.scopus.com/authid/detail.uri?authorId=57200814774 ResearcherID: https://publons.com/researcher/2814586/michael-wagner/ GoogleScholar: https://scholar.google.com/citations?user=JF6OQ_0AAAAJ&hl=de 269. Neuditschko B, Legin AA, Baier D, Schintlmeister A, Reipert S, Wagner M, Keppler BK, Berger W, Meier-Menches SM, Gerner C. 2021. Interaction with ribosomal proteins accompanies stress induction of the anticancer metallodrug BOLD-100/KP1339 in the endoplasmic reticulum. Angew Chem Int Ed Engl, 60:5063-5068 268. Willeit P, Krause R, Lamprecht B, Berghold A, Hanson B, Stelzl E, Stoiber H, Zuber J, Heinen R, Köhler A, Bernhard D, Borena W, Doppler C, von Laer D, Schmidt H, Pröll J, Steinmetz I, Wagner M. 2021. Prevalence of RT-qPCR-detected SARS-CoV-2 infection at schools: First results from the Austrian School-SARS-CoV-2 prospective cohort study. The Lancet Regional Health - Europe, 5:100086 267. Lee KS, Pereira FC, Palatinszky M, Behrendt L, Alcolombri U, Berry D, Wagner M, Stocker R. -
Tsuchida S, Suzuki Y, Fujiwara Y, Kawato M, Uematsu K, Yamanaka T, Mizota
Tsuchida S, Suzuki Y, Fujiwara Y, Kawato M, Uematsu K, Yamanaka T, Mizota C, Yamamoto H (2011) Epibiotic association between filamentous bacteria and the vent-associated galatheid crab, Shinkaia crosnieri (Decapoda: Anomura). J Mar Biol Ass 91:23-32 藤原義弘 (2010) 鯨骨が育む深海の小宇宙ー鯨骨生物群集研究の最前線ー.ビオ フィリア 6(2): 25-29. 藤原義弘 (2010) 深海のとっても変わった生きもの.幻冬舎. 藤原義弘・河戸勝 (2010) 鯨骨生物群集と二つの「飛び石」仮説.高圧力の科 学と技術 20(4): 315-320. 土屋正史・力石嘉人・大河内直彦・高野淑識・小川奈々子・藤倉克則・吉田尊 雄・喜多村稔・Dhugal J. Lindsay・藤原義弘・野牧秀隆・豊福高志・山本啓之・ 丸山正・和田英太郎 (2010) アミノ酸窒素同位体比に基づく海洋生態系の食物網 構造の解析.2010年度日本地球化学会年会. Watanabe H, Fujikura K, Kojima S, Miyazaki J-i, Fujiwara Y (2009) Japan: Vents and seeps in close proximity In: Topic in Geobiology. Springer, p in press Kinoshita G, Kawato M, Shinozaki A, Yamamoto T, Okoshi K, Kubokawa K, Yamamoto H, Fujiwara Y (2010) Protandric hermaphroditism in the whale-fall mussel Adipicola pacifica. Cah Biol Mar 51:in press Miyazaki M, Kawato M, Umezu Y, Pradillon F, Fujiwara Y (2010) Isolation of symbiont-like bacteria from Osedax spp. 58p. Kawato M, Fujiwara Y (2010) Discovery of chemosymbiotic ciliate Zoothamnium niveum from a whale fall in Japan. Japan Geoscience Union Meeting 2010. Fujiwara Y, Kawato M, Miyazaki M, (2010) Diversity and evolution of symbioses at whale falls. Memorial Symposium for the 26th International Prize for Biology ”Biology of Symbiosis”. 藤原 義弘,河戸 勝,山中 寿朗 (2010) 鯨骨産イガイ類における共生様式の進 化.日本地球惑星科学連合2010年大会. Nishimura A, Yamamoto T, Fujiwara Y, Masaru Kawato, Pradillon Florence and Kaoru Kubokawa (2010) Population Structure of Protodrilus sp. (Polychaeta) in Whale Falls. Trench Connection: International Symposium on the Deepest Environment on Earth. 永堀 敦志,藤原 義弘,河戸 勝 (2010) 鯨骨産二枚貝ヒラノマクラの鰓上皮細 胞の貪食能力に関する研究.日本地球惑星科学連合2010年大会. Shinozaki A, Kawato M, Noda C, Yamamoto T, Kubokawa K, Yamanaka T, Tahara J, Nakajoh H, Aoki T, Miyake H, Fujiwara Y (2010) Reproduction of the vestimentiferan tubeworm Lamellibrachia satsuma inhabiting a whale vertebra in an aquarium. -
ABSTRACT Title of Dissertation: IDENTIFICATION, LIFE HISTORY
ABSTRACT Title of Dissertation: IDENTIFICATION, LIFE HISTORY, AND ECOLOGY OF PERITRICH CILIATES AS EPIBIONTS ON CALANOID COPEPODS IN THE CHESAPEAKE BAY Laura Roberta Pinto Utz, Doctor of Philosophy, 2003 Dissertation Directed by: Professor Eugene B. Small Department of Biology Adjunct Professor D. Wayne Coats Department of Biology and Smithsonian Environmental Research Center Epibiotic relationships are a widespread phenomenon in marine, estuarine and freshwater environments, and include diverse epibiont organisms such as bacteria, protists, rotifers, and barnacles. Despite its wide occurrence, epibiosis is still poorly known regarding its consequences, advantages, and disadvantages for host and epibiont. Most studies performed about epibiotic communities have focused on the epibionts’ effects on host fitness, with few studies emphasizing on the epibiont itself. The present work investigates species composition, spatial and temporal fluctuations, and aspects of the life cycle and attachment preferences of Peritrich epibionts on calanoid copepods in Chesapeake Bay, USA. Two species of Peritrich ciliates (Zoothamnium intermedium Precht, 1935, and Epistylis sp.) were identified to live as epibionts on the two most abundant copepod species (Acartia tonsa and Eurytemora affinis) during spring and summer months in Chesapeake Bay. Infestation prevalence was not significantly correlated with environmental variables or phytoplankton abundance, but displayed a trend following host abundance. Investigation of the life cycle of Z. intermedium suggested that it is an obligate epibiont, being unable to attach to non-living substrates in the laboratory or in the field. Formation of free-swimming stages (telotrochs) occurs as a result of binary fission, as observed for other peritrichs, and is also triggered by death or molt of the crustacean host. -
PROTISTAS MARINOS Viviana A
PROTISTAS MARINOS Viviana A. Alder INTRODUCCIÓN plantas y animales. Según este esquema básico, a las plantas les correspondían las características de En 1673, el editor de Philosophical Transac- ser organismos sésiles con pigmentos fotosinté- tions of the Royal Society of London recibió una ticos para la síntesis de las sustancias esenciales carta del anatomista Regnier de Graaf informan- para su metabolismo a partir de sustancias inor- do que un comerciante holandés, Antonie van gánicas (nutrición autótrofa), y de poseer células Leeuwenhoek, había “diseñado microscopios rodeadas por paredes de celulosa. En oposición muy superiores a aquéllos que hemos visto has- a las plantas, les correspondía a los animales los ta ahora”. Van Leeuwenhoek vendía lana, algo- atributos de tener motilidad activa y de carecer dón y otros materiales textiles, y se había visto tanto de pigmentos fotosintéticos (debiendo por en la necesidad de mejorar las lentes de aumento lo tanto procurarse su alimento a partir de sustan- que comúnmente usaba para contar el número cias orgánicas sintetizadas por otros organismos) de hebras y evaluar la calidad de fibras y tejidos. como de paredes celulósicas en sus células. Así fue que construyó su primer microscopio de Es a partir de los estudios de Georg Gol- lente única: simple, pequeño, pero con un poder dfuss (1782-1848) que estos diminutos organis- de magnificación de hasta 300 aumentos (¡diez mos, invisibles a ojo desnudo, comienzan a ser veces más que sus precursores!). Este magnífico clasificados como plantas primarias -
Protist Phylogeny and the High-Level Classification of Protozoa
Europ. J. Protistol. 39, 338–348 (2003) © Urban & Fischer Verlag http://www.urbanfischer.de/journals/ejp Protist phylogeny and the high-level classification of Protozoa Thomas Cavalier-Smith Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK; E-mail: [email protected] Received 1 September 2003; 29 September 2003. Accepted: 29 September 2003 Protist large-scale phylogeny is briefly reviewed and a revised higher classification of the kingdom Pro- tozoa into 11 phyla presented. Complementary gene fusions reveal a fundamental bifurcation among eu- karyotes between two major clades: the ancestrally uniciliate (often unicentriolar) unikonts and the an- cestrally biciliate bikonts, which undergo ciliary transformation by converting a younger anterior cilium into a dissimilar older posterior cilium. Unikonts comprise the ancestrally unikont protozoan phylum Amoebozoa and the opisthokonts (kingdom Animalia, phylum Choanozoa, their sisters or ancestors; and kingdom Fungi). They share a derived triple-gene fusion, absent from bikonts. Bikonts contrastingly share a derived gene fusion between dihydrofolate reductase and thymidylate synthase and include plants and all other protists, comprising the protozoan infrakingdoms Rhizaria [phyla Cercozoa and Re- taria (Radiozoa, Foraminifera)] and Excavata (phyla Loukozoa, Metamonada, Euglenozoa, Percolozoa), plus the kingdom Plantae [Viridaeplantae, Rhodophyta (sisters); Glaucophyta], the chromalveolate clade, and the protozoan phylum Apusozoa (Thecomonadea, Diphylleida). Chromalveolates comprise kingdom Chromista (Cryptista, Heterokonta, Haptophyta) and the protozoan infrakingdom Alveolata [phyla Cilio- phora and Miozoa (= Protalveolata, Dinozoa, Apicomplexa)], which diverged from a common ancestor that enslaved a red alga and evolved novel plastid protein-targeting machinery via the host rough ER and the enslaved algal plasma membrane (periplastid membrane). -
Metagenomic Analysis Shows the Presence of Bacteria Related To
ORIGINAL RESEARCH published: 28 May 2018 doi: 10.3389/fmars.2018.00171 Metagenomic Analysis Shows the Presence of Bacteria Related to Free-Living Forms of Sulfur-Oxidizing Chemolithoautotrophic Symbionts in the Rhizosphere of the Seagrass Zostera marina Catarina Cúcio 1, Lex Overmars 1, Aschwin H. Engelen 2 and Gerard Muyzer 1* 1 Edited by: Microbial Systems Ecology, Department of Freshwater and Marine Ecology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, Netherlands, 2 Marine Ecology and Evolution Research Group, Jillian Petersen, CCMAR-CIMAR Centre for Marine Sciences, Universidade do Algarve, Faro, Portugal Universität Wien, Austria Reviewed by: Stephanie Markert, Seagrasses play an important role as ecosystem engineers; they provide shelter to many Institut für Marine Biotechnologie, animals and improve water quality by filtering out nutrients and by controlling pathogens. Germany Annette Summers Engel, Moreover, their rhizosphere promotes a myriad of microbial interactions and processes, University of Tennessee, Knoxville, which are dominated by microorganisms involved in the sulfur cycle. This study United States provides a detailed insight into the metabolic sulfur pathways in the rhizobiome of the *Correspondence: Gerard Muyzer seagrass Zostera marina, a dominant seagrass species across the temperate northern [email protected] hemisphere. Shotgun metagenomic sequencing revealed the relative dominance of Gamma- and Deltaproteobacteria, and comparative analysis of sulfur genes identified a Specialty section: This article was submitted to higher abundance of genes related to sulfur oxidation than sulfate reduction. We retrieved Aquatic Microbiology, four high-quality draft genomes that are closely related to the gill symbiont of the clam a section of the journal Solemya velum, which suggests the presence of putative free-living forms of symbiotic Frontiers in Marine Science bacteria. -
Bellec Et Al.5)
Chemosynthetic ectosymbionts associated with a shallow-water marine nematode Laure Bellec, Marie-Anne Cambon Bonavita, Stéphane Hourdez, Mohamed Jebbar, Aurélie Tasiemski, Lucile Durand, Nicolas Gayet, Daniela Zeppilli To cite this version: Laure Bellec, Marie-Anne Cambon Bonavita, Stéphane Hourdez, Mohamed Jebbar, Aurélie Tasiemski, et al.. Chemosynthetic ectosymbionts associated with a shallow-water marine nematode. Scientific Reports, Nature Publishing Group, 2019, 9 (1), 10.1038/s41598-019-43517-8. hal-02265357 HAL Id: hal-02265357 https://hal.archives-ouvertes.fr/hal-02265357 Submitted on 9 Aug 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. www.nature.com/scientificreports OPEN Chemosynthetic ectosymbionts associated with a shallow-water marine nematode Received: 30 October 2018 Laure Bellec1,2,3,4, Marie-Anne Cambon Bonavita2,3,4, Stéphane Hourdez5,6, Mohamed Jebbar 3,4, Accepted: 2 April 2019 Aurélie Tasiemski 7, Lucile Durand2,3,4, Nicolas Gayet1 & Daniela Zeppilli1 Published: xx xx xxxx Prokaryotes and free-living nematodes are both very abundant and co-occur in marine environments, but little is known about their possible association. Our objective was to characterize the microbiome of a neglected but ecologically important group of free-living benthic nematodes of the Oncholaimidae family. -
Nanosims and Tissue Autoradiography Reveal Symbiont Carbon fixation and Organic Carbon Transfer to Giant Ciliate Host
The ISME Journal (2018) 12:714–727 https://doi.org/10.1038/s41396-018-0069-1 ARTICLE NanoSIMS and tissue autoradiography reveal symbiont carbon fixation and organic carbon transfer to giant ciliate host 1 2 1 3 4 Jean-Marie Volland ● Arno Schintlmeister ● Helena Zambalos ● Siegfried Reipert ● Patricija Mozetič ● 1 4 2 1 Salvador Espada-Hinojosa ● Valentina Turk ● Michael Wagner ● Monika Bright Received: 23 February 2017 / Revised: 3 October 2017 / Accepted: 9 October 2017 / Published online: 9 February 2018 © The Author(s) 2018. This article is published with open access Abstract The giant colonial ciliate Zoothamnium niveum harbors a monolayer of the gammaproteobacteria Cand. Thiobios zoothamnicoli on its outer surface. Cultivation experiments revealed maximal growth and survival under steady flow of high oxygen and low sulfide concentrations. We aimed at directly demonstrating the sulfur-oxidizing, chemoautotrophic nature of the symbionts and at investigating putative carbon transfer from the symbiont to the ciliate host. We performed pulse-chase incubations with 14C- and 13C-labeled bicarbonate under varying environmental conditions. A combination of tissue autoradiography and nanoscale secondary ion mass spectrometry coupled with transmission electron microscopy was used to fi 1234567890();,: follow the fate of the radioactive and stable isotopes of carbon, respectively. We show that symbiont cells x substantial amounts of inorganic carbon in the presence of sulfide, but also (to a lesser degree) in the absence of sulfide by utilizing internally stored sulfur. Isotope labeling patterns point to translocation of organic carbon to the host through both release of these compounds and digestion of symbiont cells. The latter mechanism is also supported by ultracytochemical detection of acid phosphatase in lysosomes and in food vacuoles of ciliate cells. -
A Realism-Based Approach to an Ontological Representation of Symbiotic Interactions Matthew Diller1* , Evan Johnson1, Amanda Hicks2 and William R
Diller et al. BMC Medical Informatics and Decision Making (2020) 20:258 https://doi.org/10.1186/s12911-020-01273-0 RESEARCH ARTICLE Open Access A realism-based approach to an ontological representation of symbiotic interactions Matthew Diller1* , Evan Johnson1, Amanda Hicks2 and William R. Hogan1 Abstract Background: The symbiotic interactions that occur between humans and organisms in our environment have a tremendous impact on our health. Recently, there has been a surge in interest in understanding the complex relationships between the microbiome and human health and host immunity against microbial pathogens, among other things. To collect and manage data about these interactions and their complexity, scientists will need ontologies that represent symbiotic interactions as they occur in reality. Methods: We began with two papers that reviewed the usage of ‘symbiosis’ and related terms in the biology and ecology literature and prominent textbooks. We then analyzed several prominent standard terminologies and ontologies that contain representations of symbiotic interactions, to determine if they appropriately defined ‘symbiosis’ and related terms according to current scientific usage as identified by the review papers. In the process, we identified several subtypes of symbiotic interactions, as well as the characteristics that differentiate them, which we used to propose textual and axiomatic definitions for each subtype of interaction. To both illustrate how to use the ontological representations and definitions we created and provide additional quality assurance on key definitions, we carried out a referent tracking analysis and representation of three scenarios involving symbiotic interactions among organisms. Results: We found one definition of ‘symbiosis’ in an existing ontology that was consistent with the vast preponderance of scientific usage in biology and ecology. -
Phylogenetic and Functional Characterization of Symbiotic Bacteria in Gutless Marine Worms (Annelida, Oligochaeta)
Phylogenetic and functional characterization of symbiotic bacteria in gutless marine worms (Annelida, Oligochaeta) Dissertation zur Erlangung des Grades eines Doktors der Naturwissenschaften -Dr. rer. nat.- dem Fachbereich Biologie/Chemie der Universität Bremen vorgelegt von Anna Blazejak Oktober 2005 Die vorliegende Arbeit wurde in der Zeit vom März 2002 bis Oktober 2005 am Max-Planck-Institut für Marine Mikrobiologie in Bremen angefertigt. 1. Gutachter: Prof. Dr. Rudolf Amann 2. Gutachter: Prof. Dr. Ulrich Fischer Tag des Promotionskolloquiums: 22. November 2005 Contents Summary ………………………………………………………………………………….… 1 Zusammenfassung ………………………………………………………………………… 2 Part I: Combined Presentation of Results A Introduction .…………………………………………………………………… 4 1 Definition and characteristics of symbiosis ...……………………………………. 4 2 Chemoautotrophic symbioses ..…………………………………………………… 6 2.1 Habitats of chemoautotrophic symbioses .………………………………… 8 2.2 Diversity of hosts harboring chemoautotrophic bacteria ………………… 10 2.2.1 Phylogenetic diversity of chemoautotrophic symbionts …………… 11 3 Symbiotic associations in gutless oligochaetes ………………………………… 13 3.1 Biogeography and phylogeny of the hosts …..……………………………. 13 3.2 The environment …..…………………………………………………………. 14 3.3 Structure of the symbiosis ………..…………………………………………. 16 3.4 Transmission of the symbionts ………..……………………………………. 18 3.5 Molecular characterization of the symbionts …..………………………….. 19 3.6 Function of the symbionts in gutless oligochaetes ..…..…………………. 20 4 Goals of this thesis …….………………………………………………………….. -
Anaerobic Sulfur Oxidation Underlies Adaptation of a Chemosynthetic Symbiont
bioRxiv preprint doi: https://doi.org/10.1101/2020.03.17.994798; this version posted January 28, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Anaerobic sulfur oxidation underlies adaptation of a chemosynthetic symbiont 2 to oxic-anoxic interfaces 3 4 Running title: chemosynthetic ectosymbiont’s response to oxygen 5 6 Gabriela F. Paredes1, Tobias Viehboeck1,2, Raymond Lee3, Marton Palatinszky2, 7 Michaela A. Mausz4, Siegfried Reipert5, Arno Schintlmeister2,6, Andreas Maier7, Jean- 8 Marie Volland1,*, Claudia Hirschfeld8, Michael Wagner2,9, David Berry2,10, Stephanie 9 Markert8, Silvia Bulgheresi1,# and Lena König1# 10 11 1 University of Vienna, Department of Functional and Evolutionary Ecology, 12 Environmental Cell Biology Group, Vienna, Austria 13 14 2 University of Vienna, Center for Microbiology and Environmental Systems Science, 15 Division of Microbial Ecology, Vienna, Austria 16 17 3 Washington State University, School of Biological Sciences, Pullman, WA, USA 18 19 4 University of Warwick, School of Life Sciences, Coventry, UK 20 21 5 University of Vienna, Core Facility Cell Imaging and Ultrastructure Research, Vienna, 22 Austria 23 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.03.17.994798; this version posted January 28, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. -
Morphology of Obligate Ectosymbionts Reveals Paralaxus Gen. Nov., a New
bioRxiv preprint doi: https://doi.org/10.1101/728105; this version posted August 7, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Harald Gruber-Vodicka 2 Max Planck Institute for Marine Microbiology, Celsiusstrasse 1; 28359 Bremen, 3 Germany, +49 421 2028 825, [email protected] 4 5 Morphology of obligate ectosymbionts reveals Paralaxus gen. nov., a 6 new circumtropical genus of marine stilbonematine nematodes 7 8 Florian Scharhauser1*, Judith Zimmermann2*, Jörg A. Ott1, Nikolaus Leisch2 and Harald 9 Gruber-Vodicka2 10 11 1Department of Limnology and Bio-Oceanography, University of Vienna, Althanstrasse 12 14, A-1090 Vienna, Austria 2 13 Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, D-28359 Bremen, 14 Germany 15 16 *Contributed equally 17 18 19 20 Keywords: Paralaxus, thiotrophic symbiosis, systematics, ectosymbionts, molecular 21 phylogeny, cytochrome oxidase subunit I, 18S rRNA, 16S rRNA, 22 23 24 Running title: “Ectosymbiont morphology reveals new nematode genus“ 25 Scharhauser et al. 26 27 bioRxiv preprint doi: https://doi.org/10.1101/728105; this version posted August 7, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Scharhauser et al. 2 28 Abstract 29 Stilbonematinae are a subfamily of conspicuous marine nematodes, distinguished by a 30 coat of sulphur-oxidizing bacterial ectosymbionts on their cuticle.