Qntogeny and Systematics of Fishes
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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
§4-71-6.5 LIST of CONDITIONALLY APPROVED ANIMALS November
§4-71-6.5 LIST OF CONDITIONALLY APPROVED ANIMALS November 28, 2006 SCIENTIFIC NAME COMMON NAME INVERTEBRATES PHYLUM Annelida CLASS Oligochaeta ORDER Plesiopora FAMILY Tubificidae Tubifex (all species in genus) worm, tubifex PHYLUM Arthropoda CLASS Crustacea ORDER Anostraca FAMILY Artemiidae Artemia (all species in genus) shrimp, brine ORDER Cladocera FAMILY Daphnidae Daphnia (all species in genus) flea, water ORDER Decapoda FAMILY Atelecyclidae Erimacrus isenbeckii crab, horsehair FAMILY Cancridae Cancer antennarius crab, California rock Cancer anthonyi crab, yellowstone Cancer borealis crab, Jonah Cancer magister crab, dungeness Cancer productus crab, rock (red) FAMILY Geryonidae Geryon affinis crab, golden FAMILY Lithodidae Paralithodes camtschatica crab, Alaskan king FAMILY Majidae Chionocetes bairdi crab, snow Chionocetes opilio crab, snow 1 CONDITIONAL ANIMAL LIST §4-71-6.5 SCIENTIFIC NAME COMMON NAME Chionocetes tanneri crab, snow FAMILY Nephropidae Homarus (all species in genus) lobster, true FAMILY Palaemonidae Macrobrachium lar shrimp, freshwater Macrobrachium rosenbergi prawn, giant long-legged FAMILY Palinuridae Jasus (all species in genus) crayfish, saltwater; lobster Panulirus argus lobster, Atlantic spiny Panulirus longipes femoristriga crayfish, saltwater Panulirus pencillatus lobster, spiny FAMILY Portunidae Callinectes sapidus crab, blue Scylla serrata crab, Samoan; serrate, swimming FAMILY Raninidae Ranina ranina crab, spanner; red frog, Hawaiian CLASS Insecta ORDER Coleoptera FAMILY Tenebrionidae Tenebrio molitor mealworm, -
Forage Fish Management Plan
Oregon Forage Fish Management Plan November 19, 2016 Oregon Department of Fish and Wildlife Marine Resources Program 2040 SE Marine Science Drive Newport, OR 97365 (541) 867-4741 http://www.dfw.state.or.us/MRP/ Oregon Department of Fish & Wildlife 1 Table of Contents Executive Summary ....................................................................................................................................... 4 Introduction .................................................................................................................................................. 6 Purpose and Need ..................................................................................................................................... 6 Federal action to protect Forage Fish (2016)............................................................................................ 7 The Oregon Marine Fisheries Management Plan Framework .................................................................. 7 Relationship to Other State Policies ......................................................................................................... 7 Public Process Developing this Plan .......................................................................................................... 8 How this Document is Organized .............................................................................................................. 8 A. Resource Analysis .................................................................................................................................... -
(Teleostei: Pempheridae) from the Western Indian Ocean
Zootaxa 3780 (2): 388–398 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2014 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3780.2.10 http://zoobank.org/urn:lsid:zoobank.org:pub:F42C1553-10B0-428B-863E-DCA8AC35CA44 Pempheris bexillon, a new species of sweeper (Teleostei: Pempheridae) from the Western Indian Ocean RANDALL D. MOOI1,2 & JOHN E. RANDALL3 1The Manitoba Museum, 190 Rupert Ave., Winnipeg MB, R3B 0N2 Canada. E-mail: [email protected] 2Department of Biological Sciences, Biological Sciences Bldg., University of Manitoba, Winnipeg MB, R3T 2N2 Canada 3Bishop Museum, 1525 Bernice St., Honolulu, HI 96817-2704 USA. E-mail: [email protected] Abstract Pempheris bexillon new species is described from the 129 mm SL holotype and 11 paratypes (119–141 mm SL) from the Comoro Islands. Twelve other specimens have been examined from the Agaléga Islands, Mascarene Islands, and Bassas da India (Madagascar). It is differentiated from other Pempheris by the following combination of characters: a yellow dor- sal fin with a black, distal margin along its full length, broadest on anterior rays (pupil-diameter width) and gradually nar- rowing posteriorly, the last ray with only a black tip; large, deciduous cycloid scales on the flank; dark, oblong spot on the pectoral-fin base; anal fin with a dark margin; segmented anal-fin rays 38–45 (usually >40); lateral-line scales 56–65; and total gill rakers on the first arch 31–35; iris reddish-brown. Tables of standard meristic and color data for type material of all nominal species of cycloid-scaled Pempheris in the Indo-Pacific are provided. -
Coryphaena Hippurus (Linnaeus, 1758) in Maltese Waters, Central Mediterranean M
Research Article Mediterranean Marine Science Indexed in WoS (Web of Science, ISI Thomson) and SCOPUS The journal is available on line at http://www.medit-mar-sc.net DOI: http://dx.doi.org/10.12681/mms.706 Age, Growth and Reproduction of Coryphaena hippurus (Linnaeus, 1758) in Maltese Waters, Central Mediterranean M. GATT1, M. DIMECH1 and P.J. SCHEMBRI1 1 Department of Biology, University of Malta, Msida MSD 2080, Malta Corresponding author: [email protected] Handling Editor: Kostas Stergiou Received: 24 November 2014; Accepted: 22 January 2015; Published on line: 27 April 2015. Abstract Age, growth and reproduction of the dolphinfishCoryphaena hippurus Linnaeus, 1758 collected from the Central Mediterranean in the period 2004-2010 by the traditional Maltese fish aggregating devices (FAD) and surface longline fisheries were studied. The a and b parameters of the length-weight relationship for fish 11-142 cm fork length (FL) (n = 4042) were determined as a = 0.018 and 0.022 with b = 2.85 and 2.79, for males and females respectively. The counting of annual increments from dorsal spines of >65 cm FL dolphinfish at X25 magnification (n = 47) permitting an age reading resolution in years, and the counting of daily increments from sagittal otoliths of <65 cm FL dolphinfish at X400 magnification (n = 583) permitting an age reading resolution in days, were estimated; the von Bertalanffy growth model applied to these fish gave the following parameters:L∞ = 107.8 cm FL and 120.2 cm FL, and K = 1.9 yr-1 and 1.56 yr-1, for males and females respectively. -
Stanford Alumni', Bronze Tablet Dedicated June, 1931, University of Hawaii: "India Rubber Tree Planted by David Starr Jordan
Stanford Alumni', bronze tablet dedicated June, 1931, University of Hawaii: "India rubber tree planted by David Starr Jordan. Chancellor Emeritus. Leland Stanford Jr. University, December I I, 1922." Dr. Jordan recently celebrated his eightieth birthday. tnItnlinlintinitnItnItla 11:111C11/111/ 1/Oltial • • • • - !• • 4. ••• 4, a . ilmci, fittb _vittrfiri firtaga3utr . • CONDUCTED BY ALEXANDER HUME FORD • Volume XLII Number 4 • CONTENTS FOR. OCTOBER, 1931 • . Art Section—Fisheries in the Pacific - - - - 302 • History of Zoological Explorations of the Pacific Coast - 317 • By Dr. David Starr Jordan • Science Over the Radio . An Introduction to Insects in Hawaii - - - - 321 By E. H. Bryan, Jr. Insect Pests of Sugar Cane in Hawaii - - - - 325 By O. H. Swezey Some Insect Pests of Pineapple Plants - - - 328 By Dr. Walter Carter Termites in Hawaii - - - - - - - 331 • By E. M. Ehrhorn . The Mediterranean Fruit Fly - - - - 333 41 By a C. McBride Combating Garden Insects in Hawaii - - - - 335 • By Merrill K. Riley i Some Aspects of Biological Control in Hawaii - - 339 . By D. T. Fullaway • • The Minerals of Oahu - - - - - - - 341 By Dr. Arthur S. Eakle . Tropical America's Agricultural Gifts - - - - 344 By 0. F. Cook t • Two Bird Importations Into the South Seas - - - 351 • By Inez Wheeler Westgate • Dairying in New Zealand - - - - - - 355 By Reivi Alley Oyer-Production eof Rice in Japan - - - - - 357 Tai-Kam Island Leper Colony of China - - - - 363 By A. C. Deckelman Journal of the•Pan-Pacific Research Institution, Vol. VI. No. 4 Bulletin of the Pan-Pacific Union, New Series, No. 140 CE Ile ItIth-liariftr flatuuninr Published monthly by ALEXANDER HUME FORD, 301 Pan-Pacific Building, Honolulu, T. -
Symphysanodon Pitondelafournaisei a New Species Of
Symphysanodon pitondelafournaisei : une nouvelle espèce de Symphysanodontidae (Perciformes) de l’île de La Réunion (France, océan Indien) par Jean-Claude QUÉRO (1), Jérôme SPITZ (2, 3) & Jean-Jacques VAYNE (4) RÉSUMÉ. - Du 8 au 11 avril 2007, à l’île de La Réunion, parmi les poissons récoltés à la surface, suite à l’arrivée de la coulée de lave de l’éruption volcanique dans l’océan, figuraient 2 exemplaires deSymphysanodon (Perciformes: Symphy- sanodontidae). Ces spécimens appartiennent à une espèce nouvelle se distinguant des espèces indopacifiques connues pour ce genre par un ensemble de caractères : 19 rayons à la nageoire caudale ; 15 rayons aux pectorales ; 48-50 écailles sur la ligne latérale ; 34-36 branchicténies sur le 1er arc branchial ; une longue anale couchée (33-38,5% LS) ; de longues pectora- les (30% LS) ; des yeux assez grands (10-11% LS). Ils sont décrits sous le nom de Symphysanodon pitondelafournaisei. ABSTRACT. - Symphysanoson pitondelafournaisei a new species of Symphysanodontidae (Perciformes) from Reunion Island. From the 8th to the 11th April 2007 at Reunion Island (Indian Ocean) some fish were collected at sea surface after the eruption of the Piton de la Fournaise. Among these are two specimens of Symphysanodon (Perciformes: Symphy- sanodontidae). This family was recently reviewed (Anderson and Springer, 2005). Ten species have been described: three from the Atlantic Ocean S. berryi Anderson, 1970; S. octoactinus Anderson, 1970 and S. mona Anderson & Springer, 2005; four from the Pacific OceanS. typus Bleeker, 1878; S. katayamai Anderson, 1970; S. maunaloae Anderson, 1970 and S. parini Anderson & Springer 2005; three from the Indian Ocean S. -
Proceedings of the United States National Museum
A REVIEW OF THE SPARID^ AND RELATED FAMILIES OF PERCH-LIKE FISHES FOUND IN THE WATERS OF JAPAN. By David Starr Jordan and William Francis Thompson, Of Stanford University, California. In the present paper is given a review of the species of fishes belonging to those percomorphoiis famihes alUed to the Sparoid fishes, or fishes related to the tai or porgy of the waters of Japan, which have not been hitherto discussed in these pages by the senior author and his associates. The families of Kuldiidse, Priacanthidse, Theraponidse, Banjosidae, Hsemulidae, Sparidse, Kyphosidse, and Ery- thrichthyidse are thus included. The paper is based on material collected in Japan in 1900 by Pro- fessors Jordan and Snyder and now divided between the United States National Museum and the museum of Stanford University. Most of the cuts are from drawings by Mr. Sekko Shimada. The families here named are adopted provisionally only. The dis- tinctions between Sparidse, Haemulidse, Lutianidae, and their relatives are of doubtful value, while at present no definite boundaries can be assigned to the Serranidse. L Family KUHLIID.^. Body oblong, strongly compressed; scales large, cihated. Lateral line complete, the tubes straight and occupying the half or more of the exposed surface of the scale. Mouth rather large, protractile; maxillary exposed, without supplemental bone; teeth in jaws in villi- form bands; teeth on vomer, palatines, entopterygoids, and ecto- pterygoids; tongue smooth; head partly naked; preorbital and pre- opercle denticulate; opercle with 2 spines. Gill membranes separate; 6 branchiostegals; pseudobranchise large; gill-rakers long and slender. Dorsal fms connected at the base, with X, 9 to 13 rays, the spinous portion longer than the soft. -
Symposium on Systematics and Diversity of Fishes Program
Symposium on Systematics and Diversity of Fishes Program 6 July 2013 9:30-10:00 Registration 10:00 Opening Remarks 10:10-10:50 Redefinition of and relationships within the Acanthuroidei based on adult and larval morphology. Jeffrey M. Leis1 and Anthony C. Gill2 (1Australian Museum and University of Tasmania, AUSTRALIA; 2The University of Sydney, AUSTRALIA) 10:50-11:30 A ‘living fossil’ eel (Anguilliformes: Protanguillidae, fam. nov.) from an undersea cave in Palau. G. David Johnson1, Hitoshi Ida2, Jiro Sakaue3, Tetsuya Sado4, Takashi Asahida2 and Masaki Miya4 (1National Museum of Natural History, Smithsonian Institution, USA; 2Kitasato University, JAPAN; 3Southern Marine Laboratory, PALAU; 4Natural History Museum and Institute, Chiba, JAPAN) 11:30-13:00 Lunch 13:00-13:50 Poster Session 13:50-14:30 Connection of fish diversity to biomimetics: a challenge for the National Museum of Nature and Science. Gento Shinohara (National Museum of Nature and Science, JAPAN) 14:30-15:10 Flatfishes (Teleostei: Pleuronectiformes): A contemporary view of species diversity. Thomas A. Munroe (National Museum of Natural History, Smithsonian Institute, USA) 15:10-15:40 Coffee Break 15:40-16:20 The biodiversity of coral reef fishes: from patterns to processes. David R. Bellwood (James Cook University, AUSTRALIA) 16:20-17:00 Speciation in Coral reef fishes. Luiz A. Rocha (California Academy of Sciences, USA) 17:00-17:40 Climate change, ocean acidification and reef fish diversity. Philip L. Munday (James Cook University, AUSTRALIA) 18:00-20:00 Mixer (buffet style dinner with drinks) Abstracts of Oral Presentations Redefinition of and relationships within the Acanthuroidei based on adult and larval morphology Jeffrey M. -
ILLEGAL FISHING Which Fish Species Are at Highest Risk from Illegal and Unreported Fishing?
ILLEGAL FISHING Which fish species are at highest risk from illegal and unreported fishing? October 2015 CONTENTS EXECUTIVE SUMMARY 3 INTRODUCTION 4 METHODOLOGY 5 OVERALL FINDINGS 9 NOTES ON ESTIMATES OF IUU FISHING 13 Tunas 13 Sharks 14 The Mediterranean 14 US Imports 15 CONCLUSION 16 CITATIONS 17 OCEAN BASIN PROFILES APPENDIX 1: IUU Estimates for Species Groups and Ocean Regions APPENDIX 2: Estimates of IUU Risk for FAO Assessed Stocks APPENDIX 3: FAO Ocean Area Boundary Descriptions APPENDIX 4: 2014 U.S. Edible Imports of Wild-Caught Products APPENDIX 5: Overexploited Stocks Categorized as High Risk – U.S. Imported Products Possibly Derived from Stocks EXECUTIVE SUMMARY New analysis by World Wildlife Fund (WWF) finds that over 85 percent of global fish stocks can be considered at significant risk of Illegal, Unreported, and Unregulated (IUU) fishing. This evaluation is based on the most recent comprehensive estimates of IUU fishing and includes the worlds’ major commercial stocks or species groups, such as all those that are regularly assessed by the United Nations Food and Agriculture Organization (FAO). Based on WWF’s findings, the majority of the stocks, 54 percent, are categorized as at high risk of IUU, with an additional 32 perent judged to be at moderate risk. Of the 567 stocks that were assessed, the findings show that 485 stocks fall into these two categories. More than half of the world’s most overexploited stocks are at the highest risk of IUU fishing. Examining IUU risk by location, the WWF analysis shows that in more than one-third of the world’s ocean basins as designated by the FAO, all of these stocks were at high or moderate risk of IUU fishing. -
Perciformes: Haemulidae) Inferred Using Mitochondrial and Nuclear Genes
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/256288239 A molecular phylogeny of the Grunts (Perciformes: Haemulidae) inferred using mitochondrial and nuclear genes Article in Zootaxa · June 2011 DOI: 10.11646/zootaxa.2966.1.4 CITATIONS READS 35 633 3 authors, including: Millicent D Sanciangco Luiz A Rocha Old Dominion University California Academy of Sciences 26 PUBLICATIONS 1,370 CITATIONS 312 PUBLICATIONS 8,691 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Mesophotic Coral Reefs View project Vitória-Trindade Chain View project All content following this page was uploaded by Luiz A Rocha on 20 May 2014. The user has requested enhancement of the downloaded file. Zootaxa 2966: 37–50 (2011) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2011 · Magnolia Press ISSN 1175-5334 (online edition) A molecular phylogeny of the Grunts (Perciformes: Haemulidae) inferred using mitochondrial and nuclear genes MILLICENT D. SANCIANGCO1, LUIZ A. ROCHA2 & KENT E. CARPENTER1 1Department of Biological Sciences, Old Dominion University, Mills Godwin Building, Norfolk, VA 23529 USA. E-mail: [email protected], [email protected] 2Marine Science Institute, University of Texas at Austin, 750 Channel View Dr., Port Aransas, TX 78373, USA. E-mail: [email protected] Abstract We infer a phylogeny of haemulid genera using mitochondrial COI and Cyt b genes and nuclear RAG1, SH3PX3, and Plagl2 genes from 56 haemulid species representing 18 genera of the expanded haemulids (including the former inermiids) and ten outgroup species. Results from maximum parsimony, maximum likelihood, and Bayesian analyses show strong support for a monophyletic Haemulidae with the inclusion of Emmelichthyops atlanticus. -
Guide to the Coastal Marine Fishes of California
STATE OF CALIFORNIA THE RESOURCES AGENCY DEPARTMENT OF FISH AND GAME FISH BULLETIN 157 GUIDE TO THE COASTAL MARINE FISHES OF CALIFORNIA by DANIEL J. MILLER and ROBERT N. LEA Marine Resources Region 1972 ABSTRACT This is a comprehensive identification guide encompassing all shallow marine fishes within California waters. Geographic range limits, maximum size, depth range, a brief color description, and some meristic counts including, if available: fin ray counts, lateral line pores, lateral line scales, gill rakers, and vertebrae are given. Body proportions and shapes are used in the keys and a state- ment concerning the rarity or commonness in California is given for each species. In all, 554 species are described. Three of these have not been re- corded or confirmed as occurring in California waters but are included since they are apt to appear. The remainder have been recorded as occurring in an area between the Mexican and Oregon borders and offshore to at least 50 miles. Five of California species as yet have not been named or described, and ichthyologists studying these new forms have given information on identification to enable inclusion here. A dichotomous key to 144 families includes an outline figure of a repre- sentative for all but two families. Keys are presented for all larger families, and diagnostic features are pointed out on most of the figures. Illustrations are presented for all but eight species. Of the 554 species, 439 are found primarily in depths less than 400 ft., 48 are meso- or bathypelagic species, and 67 are deepwater bottom dwelling forms rarely taken in less than 400 ft.