Symposium on Systematics and Diversity of Fishes Program
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
Proceedings of the United States National Museum
A REVIEW OF THE SPARID^ AND RELATED FAMILIES OF PERCH-LIKE FISHES FOUND IN THE WATERS OF JAPAN. By David Starr Jordan and William Francis Thompson, Of Stanford University, California. In the present paper is given a review of the species of fishes belonging to those percomorphoiis famihes alUed to the Sparoid fishes, or fishes related to the tai or porgy of the waters of Japan, which have not been hitherto discussed in these pages by the senior author and his associates. The families of Kuldiidse, Priacanthidse, Theraponidse, Banjosidae, Hsemulidae, Sparidse, Kyphosidse, and Ery- thrichthyidse are thus included. The paper is based on material collected in Japan in 1900 by Pro- fessors Jordan and Snyder and now divided between the United States National Museum and the museum of Stanford University. Most of the cuts are from drawings by Mr. Sekko Shimada. The families here named are adopted provisionally only. The dis- tinctions between Sparidse, Haemulidse, Lutianidae, and their relatives are of doubtful value, while at present no definite boundaries can be assigned to the Serranidse. L Family KUHLIID.^. Body oblong, strongly compressed; scales large, cihated. Lateral line complete, the tubes straight and occupying the half or more of the exposed surface of the scale. Mouth rather large, protractile; maxillary exposed, without supplemental bone; teeth in jaws in villi- form bands; teeth on vomer, palatines, entopterygoids, and ecto- pterygoids; tongue smooth; head partly naked; preorbital and pre- opercle denticulate; opercle with 2 spines. Gill membranes separate; 6 branchiostegals; pseudobranchise large; gill-rakers long and slender. Dorsal fms connected at the base, with X, 9 to 13 rays, the spinous portion longer than the soft. -
Perciformes: Haemulidae) Inferred Using Mitochondrial and Nuclear Genes
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/256288239 A molecular phylogeny of the Grunts (Perciformes: Haemulidae) inferred using mitochondrial and nuclear genes Article in Zootaxa · June 2011 DOI: 10.11646/zootaxa.2966.1.4 CITATIONS READS 35 633 3 authors, including: Millicent D Sanciangco Luiz A Rocha Old Dominion University California Academy of Sciences 26 PUBLICATIONS 1,370 CITATIONS 312 PUBLICATIONS 8,691 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Mesophotic Coral Reefs View project Vitória-Trindade Chain View project All content following this page was uploaded by Luiz A Rocha on 20 May 2014. The user has requested enhancement of the downloaded file. Zootaxa 2966: 37–50 (2011) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2011 · Magnolia Press ISSN 1175-5334 (online edition) A molecular phylogeny of the Grunts (Perciformes: Haemulidae) inferred using mitochondrial and nuclear genes MILLICENT D. SANCIANGCO1, LUIZ A. ROCHA2 & KENT E. CARPENTER1 1Department of Biological Sciences, Old Dominion University, Mills Godwin Building, Norfolk, VA 23529 USA. E-mail: [email protected], [email protected] 2Marine Science Institute, University of Texas at Austin, 750 Channel View Dr., Port Aransas, TX 78373, USA. E-mail: [email protected] Abstract We infer a phylogeny of haemulid genera using mitochondrial COI and Cyt b genes and nuclear RAG1, SH3PX3, and Plagl2 genes from 56 haemulid species representing 18 genera of the expanded haemulids (including the former inermiids) and ten outgroup species. Results from maximum parsimony, maximum likelihood, and Bayesian analyses show strong support for a monophyletic Haemulidae with the inclusion of Emmelichthyops atlanticus. -
NORTH COAST FISH IDENTIFICATION GUIDE Ben M
NORTH COAST FISH IDENTIFICATION GUIDE Ben M. Rome and Stephen J. Newman Department of Fisheries 3rd floor SGIO Atrium 168-170 St George’s Terrace PERTH WA 6000 Telephone (08) 9482 7333 Facsimile (08) 9482 7389 Website: www.fish.wa.gov.au ABN: 55 689 794 771 Published by Department of Fisheries, Perth, Western Australia. Fisheries Occasional Publications No. 80, September 2010. ISSN: 1447 - 2058 ISBN: 1 921258 90 X Information about this guide he intention of the North Coast Fish Identification Guide is to provide a simple, Teasy to use manual to assist commercial, recreational, charter and customary fishers to identify the most commonly caught marine finfish species in the North Coast Bioregion. This guide is not intended to be a comprehensive taxonomic fish ID guide for all species. It is anticipated that this guide will assist fishers in providing a more comprehensive species level description of their catch and hence assist scientists and managers in understanding any variation in the species composition of catches over both spatial and temporal scales. Fish taxonomy is a dynamic and evolving field. Advances in molecular analytical techniques are resolving many of the relationships and inter-relationships among species, genera and families of fishes. In this guide, we have used and adopted the latest taxonomic nomenclature. Any changes to fish taxonomy will be updated and revised in subsequent editions. The North Coast Bioregion extends from the Ashburton River near Onslow to the Northern Territory border. Within this region there is a diverse range of habitats from mangrove creeks, rivers, offshore islands, coral reef systems to continental shelf and slope waters. -
The Genome of Mekong Tiger Perch (Datnioides Undecimradiatus) Provides 3 Insights Into the Phylogenic Position of Lobotiformes and Biological Conservation
bioRxiv preprint doi: https://doi.org/10.1101/787077; this version posted September 30, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Article 2 The genome of Mekong tiger perch (Datnioides undecimradiatus) provides 3 insights into the phylogenic position of Lobotiformes and biological conservation 4 5 Shuai Sun1,2,3†, Yue Wang1,2,3,†, Xiao Du1,2,3,†, Lei Li1,2,3,4,†, Xiaoning Hong1,2,3,4, Xiaoyun Huang1,2,3, He Zhang1,2,3, 6 Mengqi Zhang1,2,3, Guangyi Fan1,2,3, Xin Liu1,2,3,*, Shanshan Liu1,2,3* 7 8 1 BGI-Qingdao, BGI-Shenzhen, Qingdao, 266555, China 9 2 BGI-Shenzhen, Shenzhen, 518083, China 10 3 China National GeneBank, BGI-Shenzhen, Shenzhen, 518120, China 11 4 School of Future Technology, University of Chinese Academy of Sciences, Beijing 101408, China 12 13 14 † These authors contributed equally to this work. 15 * Correspondence authors: [email protected] (S. L.), [email protected] (X. L.) 16 17 Abstract 18 Mekong tiger perch (Datnioides undecimradiatus) is one ornamental fish and a 19 vulnerable species, which belongs to order Lobotiformes. Here, we report a ~595 Mb 20 D. undecimradiatus genome, which is the first whole genome sequence in the order 21 Lobotiformes. Based on this genome, the phylogenetic tree analysis suggested that 22 Lobotiformes and Sciaenidae are closer than Tetraodontiformes, resolving a long-time 23 dispute. -
Tigerfiskar – Datnioides Text Och Foto: Jonathan Strömberg
Utblick Tigerfiskar – Datnioides Text och foto: Jonathan Strömberg ag snubblade först över Dat- följer dig verkligen i rummet och känner ren men du har gjort ett bra jobb om du får nioides i början av hobbyn, du dig övervakad när du sitter och tittar på upp den i 40 cm i akvarium. Växer förmod- Jjag sprang in på en akva- TV kan du ge dig på att det är en Dat som ligen snabbast av alla tigerfiskar, är den riebutik i närheten av Ersta står och stirrar på dig i simulerad hungers- som de flesta har minst problem med och sjukhus. Detta var 2007 när allt nöd. Det man ska veta är att tigerfiskar blir brukar vara lättast att få igång. De kommer stora, 50 cm i absolut bästa fall för de större oftast in i handeln under 5 cm och ofta i vad ”monsterfiskar” heter var arterna och runt 30 för de mindre arterna halvdåligt skick. Min personliga teori är att relativt ovanligt, jag hade precis och de kräver filtrering och mat i absolut de nu lyckats odla siamesisk tigerfisk och blivit biten av hobbyn och letade toppklass för att nå sin fulla potential. De jag tror att de kommer att bli tillgängliga efter allt som kunde vara roligt äter i princip all typ av fiskmat men kan i större storlekar och bättre pris inom en att ha i ett akvarium. Det jag inte vara en aning knepiga att få över på torr- snar framtid. Att vissa handlare lyckades anade var att jag skulle bli helt foder. Ibland kan de vara såpass knepiga få in två sändningar med tigrar stora som förälskad. -
Revision of the Genus Hapalogenys (Teleostei: Perciformes) with Two New Species from the Indo-West Pacific
Memoirs of Museum Victoria 63(1): 29–46 (2006) ISSN 1447-2546 (Print) 1447-2554 (On-line) http://www.museum.vic.gov.au/memoirs/index.asp Revision of the genus Hapalogenys (Teleostei: Perciformes) with two new species from the Indo-West Pacifi c YUKIO IWATSUKI1 AND BARRY C. RUSSELL2 1Division of Fisheries Sciences, Faculty of Agriculture, University of Miyazaki, 1−1 Gakuen-kibanadai-nishi, Miyazaki 889-2192, Japan ([email protected]) 2Museum and Art Gallery of the Northern Territory, PO Box 4646, Darwin, NT 0801, Australia ([email protected]) Abstract Iwatsuki, Y., and Russell, B.C. 2006. Revision of the genus Hapalogenys (Teleostei: Perciformes) with two new species from the Indo-West Pacifi c. Memoirs of Museum Victoria 63(1): 29–46. The Indo-West Pacifi c genus Hapalogenys is reviewed and two new species are described: Hapalogenys dampieriensis sp. nov. from Australia and H. fi lamentosus sp. nov. from the Philippines. The genus now includes: Hapalogenys analis Richardson, H. dampieriensis sp. nov., H. fi lamentosus sp. nov., H. kishinouyei Smith and Pope, H. merguiensis Iwatsuki, Ukkrit and Amaoka, H. nigripinnis (Schlegel in Temminck and Schlegel) and H. sennin Iwatsuki and Nakabo. Hapalogenys dampieriensis, H. fi lamentosus and H. kishinouyei are similar to each other in overall body appearance and are accordingly identifi ed as the “Hapalogenys kishinouyei complex”, defi ned by having 2–5 longitudinal stripes on the body. Hapalogenys dampieriensis has long been confused with H. kishinouyei in having similar longitudinal dark stripes, but the two species are easily separable on meristic and morphometric values, and body colour changes with growth. -
GENUS Datnioides Bleeker, 1853 [=Datnioides Bleeker [P.] 1853:440] Notes: [Natuurkundig Tijdschrift Voor Nederlandsch Indië V
FAMILY Datnioididae Fowler, 1931 – freshwater tripletails GENUS Datnioides Bleeker, 1853 [=Datnioides Bleeker [P.] 1853:440] Notes: [Natuurkundig Tijdschrift voor Nederlandsch Indië v. 5 (no. 3); ref. 338] Masc. Datnioides polota Bleeker 1853 (= Coius polota Hamilton 1822). Type by subsequent designation. Type designated by Bleeker 1876:272 [as "Datnioides quadrifasciatus Blkr = Datnioides polota Blkr = Chaetodon quadrifasciatus Seuvast."; polota and microlepis are the two original included species; polota Hamilton the type.] See Coius Hamilton 1822. See Kottelat 2000 [ref. 25865] for change in status and family placement. •Treated as valid as Datnioides Bleeker 1853 -- (Kottelat 1989:17 [ref. 13605], Rahman 1989:325 [ref. 24860] as Datnoides, Allen 1991:138 [ref. 21090]). •Placed in Percoidei incerte sedis -- (Johnson 1984:465 [ref. 9681]). •Synonym of Coius Hamilton 1822 -- (Roberts & Kottelat 1994:258 [ref. 21569], Carpenter 2001:2942 [ref. 26101]). •Valid as Datnioides Bleeker 1876 -- (Kottelat 2000:92 [ref. 25865], Kottelat 2000:88 [ref. 25486], Hilton & Bemis 2005:665 [ref. 28319], Kottelat 2013:344 [ref. 32989]). Current status: Valid as Datnioides Bleeker 1853. Datnioididae. Species Datnioides campbelli Whitley, 1939 [=Datnioides campbelli Whitley [G. P.] 1939:273] Notes: [Records of the Australian Museum v. 20 (no. 4); ref. 4698] Fly River [not upper Sepik River], Papua New Guinea. Current status: Valid as Datnioides campbelli Whitley 1939. Datnioididae. Distribution: South-central New Guinea (Papua Province, Indonesia and Papua New Guinea). Habitat: freshwater, brackish. Species Datnioides microlepis Bleeker, 1854 [=Datnioides microlepis Bleeker [P.] 1854:442] Notes: [Natuurkundig Tijdschrift voor Nederlandsch Indië v. 5 (no. 3); ref. 338] Kapuas River, Pontianak, Borneo, Indonesia. Current status: Valid as Datnioides microlepis Bleeker 1854. -
Supporting Information
Supporting Information Near et al. 10.1073/pnas.1304661110 SI Text and SD of 0.8 to set 57.0 Ma as the minimal age offset and 65.3 Ma as the 95% soft upper bound. Fossil Calibration Age Priors † Here we provide, for each fossil calibration prior, the identity of Calibration 7. Trichophanes foliarum, calibration 13 in Near et al. the calibrated node in the teleost phylogeny, the taxa that rep- (1). Prior setting: a lognormal prior with the mean of 1.899 and resent the first occurrence of the lineage in the fossil record, SD of 0.8 to set 34.1 Ma as the minimal age offset and 59.0 Ma as a description of the character states that justify the phylogenetic the 95% soft upper bound. placement of the fossil taxon, information on the stratigraphy of Calibration 8. †Turkmene finitimus, calibration 16 in Near et al. the rock formations bearing the fossil, and the absolute age es- (1). Prior setting: a lognormal prior with the mean of 2.006 and timate for the fossil; outline the prior age setting used in the SD of 0.8 to set 55.8 Ma as the minimal age offset and 83.5 Ma as BEAST relaxed clock analysis; and provide any additional notes the 95% soft upper bound. on the calibration. Less detailed information is provided for 26 of the calibrations used in a previous study of actinopterygian di- Calibration 9. †Cretazeus rinaldii, calibration 14 in Near et al. (1). vergence times, as all the information and prior settings for these Prior setting: a lognormal prior with the mean of 1.016 and SD of calibrations is found in the work of Near et al. -
The Genome of Mekong Tiger Perch
www.nature.com/scientificreports OPEN The genome of Mekong tiger perch (Datnioides undecimradiatus) provides insights into the phylogenetic position of Lobotiformes and biological conservation Shuai Sun1,2,3,7, Yue Wang1,2,3,7, Wenhong Zeng4,7, Xiao Du1,2,3,7, Lei Li1,2,3,5,7, Xiaoning Hong1,2,3,6, Xiaoyun Huang1,2,3, He Zhang1,2,3, Mengqi Zhang1,2,3, Guangyi Fan1,2,3, Xin Liu1,2,3 ✉ & Shanshan Liu1,2,3 ✉ Mekong tiger perch (Datnioides undecimradiatus) is an ornamental and vulnerable freshwater fsh native to the Mekong basin in Indochina, belonging to the order Lobotiformes. Here, we generated 121X stLFR co-barcode clean reads and 18X Oxford Nanopore MinION reads and obtained a 595 Mb Mekong tiger perch genome, which is the frst whole genome sequence in the order Lobotiformes. Based on this genome, the phylogenetic tree analysis suggested that Lobotiformes is more closely related to Sciaenidae than to Tetraodontiformes, resolving a long-time dispute. We depicted the genes involved in pigment development in Mekong tiger perch and results confrmed that the four rate-limiting genes of pigment synthesis had been retained after fsh-specifc genome duplication. We also estimated the demographic history of Mekong tiger perch, which showed that the efective population size sufered a continuous reduction possibly related to the contraction of immune-related genes. Our study provided a reference genome resource for the Lobotiformes, as well as insights into the phylogenetic position of Lobotiformes and biological conservation. Mekong tiger perch (Datnioides undecimradiatus) is one tropical freshwater fish, belonging to the order Lobotiformes under series Eupercaria1. -
Molecular Phylogeny of Grunts (Teleostei, Haemulidae), with An
Tavera et al. BMC Evolutionary Biology 2012, 12:57 http://www.biomedcentral.com/1471-2148/12/57 RESEARCH ARTICLE Open Access Molecular phylogeny of grunts (Teleostei, Haemulidae), with an emphasis on the ecology, evolution, and speciation history of New World species José Julián Tavera1,2*, Arturo Acero P3, Eduardo F Balart1 and Giacomo Bernardi2 Abstract Background: The fish family Haemulidae is divided in two subfamilies, Haemulinae and Plectorhynchinae (sweetlips), including approximately 17 genera and 145 species. The family has a broad geographic distribution that encompasses contrasting ecological habitats resulting in a unique potential for evolutionary hypotheses testing. In the present work we have examined the phylogenetic relationships of the family using selected representatives of additional Percomorpha based on Bayesian and Maximum likelihood methods by means of three mitochondrial genes. We also developed a phylogenetic hypothesis of the New World species based on five molecular markers (three mitochondrial and two nuclear) as a framework to evaluate the evolutionary history, the ecological diversification and speciation patterns of this group. Results: Mitochondrial genes and different reconstruction methods consistently recovered a monophyletic Haemulidae with the Sillaginidae as its sister clade (although with low support values). Previous studies proposed different relationships that were not recovered in this analysis. We also present a robust molecular phylogeny of Haemulinae based on the combined data of two nuclear and three mitochondrial genes. All topologies support the monophyly of both sub-families (Haemulinae, Plectorhinchinae). The genus Pomadasys was shown to be polyphyletic and Haemulon, Anisotremus, and Plectorhinchus were found to be paraphyletic. Four of seven presumed geminate pairs were indeed found to be sister species, however our data did not support a contemporaneous divergence. -
Fish and Sediments
Project “A Climate Resilient Mekong: Maintaining the Flows that Nourish Life” led by the Natural Heritage Institute FISH BIOECOLOGY IN RELATION TO SEDIMENTS IN THE MEKONG AND IN TROPICAL RIVERS BARAN Eric, GUERIN Eric March 2012 Table of content 1 INTRODUCTION ........................................................................................................................ 5 2 SEDIMENTS: CORE NOTIONS .................................................................................................... 7 2.1 Sediment particle size ....................................................................................................... 8 2.2 Sediments and organic matter ....................................................................................... 11 2.3 Sediments and inorganic matter .................................................................................... 12 2.4 Sediment loads ............................................................................................................... 13 3 MEKONG FISH: CORE NOTIONS .............................................................................................. 15 4 SEDIMENTS AND FISH BIOECOLOGY ....................................................................................... 17 4.1 Sediments and fish respiration ....................................................................................... 17 4.2 Sediments and fish nutrition .......................................................................................... 19 4.3 Sediments and reproduction