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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
BONY FISHES 602 Bony Fishes
click for previous page BONY FISHES 602 Bony Fishes GENERAL REMARKS by K.E. Carpenter, Old Dominion University, Virginia, USA ony fishes constitute the bulk, by far, of both the diversity and total landings of marine organisms encoun- Btered in fisheries of the Western Central Atlantic.They are found in all macrofaunal marine and estuarine habitats and exhibit a lavish array of adaptations to these environments. This extreme diversity of form and taxa presents an exceptional challenge for identification. There are 30 orders and 269 families of bony fishes presented in this guide, representing all families known from the area. Each order and family presents a unique suite of taxonomic problems and relevant characters. The purpose of this preliminary section on technical terms and guide to orders and families is to serve as an introduction and initial identification guide to this taxonomic diversity. It should also serve as a general reference for those features most commonly used in identification of bony fishes throughout the remaining volumes. However, I cannot begin to introduce the many facets of fish biology relevant to understanding the diversity of fishes in a few pages. For this, the reader is directed to one of the several general texts on fish biology such as the ones by Bond (1996), Moyle and Cech (1996), and Helfman et al.(1997) listed below. A general introduction to the fisheries of bony fishes in this region is given in the introduction to these volumes. Taxonomic details relevant to a specific family are explained under each of the appropriate family sections. The classification of bony fishes continues to transform as our knowledge of their evolutionary relationships improves. -
§4-71-6.5 LIST of CONDITIONALLY APPROVED ANIMALS November
§4-71-6.5 LIST OF CONDITIONALLY APPROVED ANIMALS November 28, 2006 SCIENTIFIC NAME COMMON NAME INVERTEBRATES PHYLUM Annelida CLASS Oligochaeta ORDER Plesiopora FAMILY Tubificidae Tubifex (all species in genus) worm, tubifex PHYLUM Arthropoda CLASS Crustacea ORDER Anostraca FAMILY Artemiidae Artemia (all species in genus) shrimp, brine ORDER Cladocera FAMILY Daphnidae Daphnia (all species in genus) flea, water ORDER Decapoda FAMILY Atelecyclidae Erimacrus isenbeckii crab, horsehair FAMILY Cancridae Cancer antennarius crab, California rock Cancer anthonyi crab, yellowstone Cancer borealis crab, Jonah Cancer magister crab, dungeness Cancer productus crab, rock (red) FAMILY Geryonidae Geryon affinis crab, golden FAMILY Lithodidae Paralithodes camtschatica crab, Alaskan king FAMILY Majidae Chionocetes bairdi crab, snow Chionocetes opilio crab, snow 1 CONDITIONAL ANIMAL LIST §4-71-6.5 SCIENTIFIC NAME COMMON NAME Chionocetes tanneri crab, snow FAMILY Nephropidae Homarus (all species in genus) lobster, true FAMILY Palaemonidae Macrobrachium lar shrimp, freshwater Macrobrachium rosenbergi prawn, giant long-legged FAMILY Palinuridae Jasus (all species in genus) crayfish, saltwater; lobster Panulirus argus lobster, Atlantic spiny Panulirus longipes femoristriga crayfish, saltwater Panulirus pencillatus lobster, spiny FAMILY Portunidae Callinectes sapidus crab, blue Scylla serrata crab, Samoan; serrate, swimming FAMILY Raninidae Ranina ranina crab, spanner; red frog, Hawaiian CLASS Insecta ORDER Coleoptera FAMILY Tenebrionidae Tenebrio molitor mealworm, -
Phylogeny Classification Additional Readings Clupeomorpha and Ostariophysi
Teleostei - AccessScience from McGraw-Hill Education http://www.accessscience.com/content/teleostei/680400 (http://www.accessscience.com/) Article by: Boschung, Herbert Department of Biological Sciences, University of Alabama, Tuscaloosa, Alabama. Gardiner, Brian Linnean Society of London, Burlington House, Piccadilly, London, United Kingdom. Publication year: 2014 DOI: http://dx.doi.org/10.1036/1097-8542.680400 (http://dx.doi.org/10.1036/1097-8542.680400) Content Morphology Euteleostei Bibliography Phylogeny Classification Additional Readings Clupeomorpha and Ostariophysi The most recent group of actinopterygians (rayfin fishes), first appearing in the Upper Triassic (Fig. 1). About 26,840 species are contained within the Teleostei, accounting for more than half of all living vertebrates and over 96% of all living fishes. Teleosts comprise 517 families, of which 69 are extinct, leaving 448 extant families; of these, about 43% have no fossil record. See also: Actinopterygii (/content/actinopterygii/009100); Osteichthyes (/content/osteichthyes/478500) Fig. 1 Cladogram showing the relationships of the extant teleosts with the other extant actinopterygians. (J. S. Nelson, Fishes of the World, 4th ed., Wiley, New York, 2006) 1 of 9 10/7/2015 1:07 PM Teleostei - AccessScience from McGraw-Hill Education http://www.accessscience.com/content/teleostei/680400 Morphology Much of the evidence for teleost monophyly (evolving from a common ancestral form) and relationships comes from the caudal skeleton and concomitant acquisition of a homocercal tail (upper and lower lobes of the caudal fin are symmetrical). This type of tail primitively results from an ontogenetic fusion of centra (bodies of vertebrae) and the possession of paired bracing bones located bilaterally along the dorsal region of the caudal skeleton, derived ontogenetically from the neural arches (uroneurals) of the ural (tail) centra. -
CHECKLIST and BIOGEOGRAPHY of FISHES from GUADALUPE ISLAND, WESTERN MEXICO Héctor Reyes-Bonilla, Arturo Ayala-Bocos, Luis E
ReyeS-BONIllA eT Al: CheCklIST AND BIOgeOgRAphy Of fISheS fROm gUADAlUpe ISlAND CalCOfI Rep., Vol. 51, 2010 CHECKLIST AND BIOGEOGRAPHY OF FISHES FROM GUADALUPE ISLAND, WESTERN MEXICO Héctor REyES-BONILLA, Arturo AyALA-BOCOS, LUIS E. Calderon-AGUILERA SAúL GONzáLEz-Romero, ISRAEL SáNCHEz-ALCántara Centro de Investigación Científica y de Educación Superior de Ensenada AND MARIANA Walther MENDOzA Carretera Tijuana - Ensenada # 3918, zona Playitas, C.P. 22860 Universidad Autónoma de Baja California Sur Ensenada, B.C., México Departamento de Biología Marina Tel: +52 646 1750500, ext. 25257; Fax: +52 646 Apartado postal 19-B, CP 23080 [email protected] La Paz, B.C.S., México. Tel: (612) 123-8800, ext. 4160; Fax: (612) 123-8819 NADIA C. Olivares-BAñUELOS [email protected] Reserva de la Biosfera Isla Guadalupe Comisión Nacional de áreas Naturales Protegidas yULIANA R. BEDOLLA-GUzMáN AND Avenida del Puerto 375, local 30 Arturo RAMíREz-VALDEz Fraccionamiento Playas de Ensenada, C.P. 22880 Universidad Autónoma de Baja California Ensenada, B.C., México Facultad de Ciencias Marinas, Instituto de Investigaciones Oceanológicas Universidad Autónoma de Baja California, Carr. Tijuana-Ensenada km. 107, Apartado postal 453, C.P. 22890 Ensenada, B.C., México ABSTRACT recognized the biological and ecological significance of Guadalupe Island, off Baja California, México, is Guadalupe Island, and declared it a Biosphere Reserve an important fishing area which also harbors high (SEMARNAT 2005). marine biodiversity. Based on field data, literature Guadalupe Island is isolated, far away from the main- reviews, and scientific collection records, we pres- land and has limited logistic facilities to conduct scien- ent a comprehensive checklist of the local fish fauna, tific studies. -
The Evolution of the Placenta Drives a Shift in Sexual Selection in Livebearing Fish
LETTER doi:10.1038/nature13451 The evolution of the placenta drives a shift in sexual selection in livebearing fish B. J. A. Pollux1,2, R. W. Meredith1,3, M. S. Springer1, T. Garland1 & D. N. Reznick1 The evolution of the placenta from a non-placental ancestor causes a species produce large, ‘costly’ (that is, fully provisioned) eggs5,6, gaining shift of maternal investment from pre- to post-fertilization, creating most reproductive benefits by carefully selecting suitable mates based a venue for parent–offspring conflicts during pregnancy1–4. Theory on phenotype or behaviour2. These females, however, run the risk of mat- predicts that the rise of these conflicts should drive a shift from a ing with genetically inferior (for example, closely related or dishonestly reliance on pre-copulatory female mate choice to polyandry in conjunc- signalling) males, because genetically incompatible males are generally tion with post-zygotic mechanisms of sexual selection2. This hypoth- not discernable at the phenotypic level10. Placental females may reduce esis has not yet been empirically tested. Here we apply comparative these risks by producing tiny, inexpensive eggs and creating large mixed- methods to test a key prediction of this hypothesis, which is that the paternity litters by mating with multiple males. They may then rely on evolution of placentation is associated with reduced pre-copulatory the expression of the paternal genomes to induce differential patterns of female mate choice. We exploit a unique quality of the livebearing fish post-zygotic maternal investment among the embryos and, in extreme family Poeciliidae: placentas have repeatedly evolved or been lost, cases, divert resources from genetically defective (incompatible) to viable creating diversity among closely related lineages in the presence or embryos1–4,6,11. -
Origin, Evolution and Homologies of the Weberian Apparatus: a New Insight
Int. J. Morphol., 27(2):333-354, 2009. Origin, Evolution and Homologies of the Weberian Apparatus: A New Insight Origen, Evolución y Homologías del Aparato Weberiano: Un Nuevo Acercamiento Rui Diogo DIOGO, R. Origin, evolution and homologies of the Weberian apparatus: a new insight. Int. J. Morphol., 27(2):333-354, 2009. SUMMARY: The Weberian apparatus is essentially a mechanical device improving audition, consisting of a double chain of ossicles joining the air bladder to the inner ear. Despite being one of the most notable complex systems of teleost fishes and the subject of several comparative, developmental and functional studies, there is still much controversy concerning the origin, evolution and homologies of the structures forming this apparatus. In this paper I provide a new insight on these topics, which takes into account the results of recent works on comparative anatomy, paleontology, and ontogeny as well as of a recent extensive phylogenetic analysis including not only numerous otophysan and non-otophysan extant otocephalans but also ostariophysan fossils such as †Chanoides macropoma, †Clupavus maroccanus, †Santanichthys diasii, †Lusitanichthys characiformis, †Sorbininardus apuliensis and †Tischlingerichthys viohli. According to the evidence now available, the Weberian apparatus of otophysans seems to be the outcome of a functional integration of features acquired in basal otocephalans and in basal ostariophysans, which were very likely not directly related with the functioning of this apparatus, and of features acquired in the nodes leading to the Otophysi and to the clade including the four extant otophysan orders, which could well have been the result of a selection directly related to the functioning of the apparatus. -
Li Lian WONG1, Siti Raudah ABDUL KADIR2, Rabi Atun ADAWIAH ABDULLAH1, Charlie Albert LASUIN3, Kok Onn KWONG4, and Takaomi ARAI5*
ACTA ICHTHYOLOGICA ET PISCATORIA (2017) 47 (1): 73–79 DOI: 10.3750/AIEP/02072 EVIDENCE SUPPORTING THE OCCURRENCE AND THE ECOLOGICAL IMPLICATION OF GIANT MOTTLED EEL, ANGUILLA MARMORATA (ACTINOPTERYGII: ANGUILLIFORMES: ANGUILLIDAE), FROM SABAH, BORNEO ISLAND Li Lian WONG1, Siti Raudah ABDUL KADIR2, Rabi Atun ADAWIAH ABDULLAH1, Charlie Albert LASUIN3, Kok Onn KWONG4, and Takaomi ARAI5* 1Institute of Tropical Aquaculture, Universiti Malaysia Terengganu, Kuala Terengganu, Terengganu, Malaysia 2Institute of Oceanography and Environment, Universiti Malaysia Terengganu, Kuala Terengganu, Terengganu, Malaysia 3Faculty of Business, Economics and Accountancy, Universiti Malaysia Sabah, Kota Kinabalu, Sabah, Malaysia 4School of Biological Sciences, Universiti Sains Malaysia, Minden, Penang, Malaysia 5Environmental and Life Sciences Programme, Faculty of Science, Universiti Brunei Darussalam, Brunei Darussalam Wong L.L., Abdul Kadir S.R., Adawiah Abdullah R.A., Lasuin C.A., Kwong K.O., Arai T. 2017. Evidence supporting the occurrence and the ecological implication of giant mottled eel, Anguilla marmorata (Actinopterygii: Anguilliformes: Anguillidae), from Sabah, Borneo Island. Acta Ichthyol. Piscat. 47 (1): 73–79. Abstract. Although tropical anguillid eels account for two-thirds of all species in the genus Anguilla, the information on the species diversity, geographic distribution, and life histories of the tropical eels is very limited. Recent studies suggested that accurate species identification in the tropical anguillid eels needs a validation by molecular genetic analysis after morphological observation. Two anguillid eels found in Sabah, Borneo Island, were firstly identified as Anguilla marmorata Quoy et Gaimard, 1824 using morphological analysis and further analysis of mitochondrial 16S ribosomal RNA (16S rRNA) sequences confirmed the morphological species identification. The presently reported study represents the first description of A. -
Updated Checklist of Marine Fishes (Chordata: Craniata) from Portugal and the Proposed Extension of the Portuguese Continental Shelf
European Journal of Taxonomy 73: 1-73 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2014.73 www.europeanjournaloftaxonomy.eu 2014 · Carneiro M. et al. This work is licensed under a Creative Commons Attribution 3.0 License. Monograph urn:lsid:zoobank.org:pub:9A5F217D-8E7B-448A-9CAB-2CCC9CC6F857 Updated checklist of marine fishes (Chordata: Craniata) from Portugal and the proposed extension of the Portuguese continental shelf Miguel CARNEIRO1,5, Rogélia MARTINS2,6, Monica LANDI*,3,7 & Filipe O. COSTA4,8 1,2 DIV-RP (Modelling and Management Fishery Resources Division), Instituto Português do Mar e da Atmosfera, Av. Brasilia 1449-006 Lisboa, Portugal. E-mail: [email protected], [email protected] 3,4 CBMA (Centre of Molecular and Environmental Biology), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal. E-mail: [email protected], [email protected] * corresponding author: [email protected] 5 urn:lsid:zoobank.org:author:90A98A50-327E-4648-9DCE-75709C7A2472 6 urn:lsid:zoobank.org:author:1EB6DE00-9E91-407C-B7C4-34F31F29FD88 7 urn:lsid:zoobank.org:author:6D3AC760-77F2-4CFA-B5C7-665CB07F4CEB 8 urn:lsid:zoobank.org:author:48E53CF3-71C8-403C-BECD-10B20B3C15B4 Abstract. The study of the Portuguese marine ichthyofauna has a long historical tradition, rooted back in the 18th Century. Here we present an annotated checklist of the marine fishes from Portuguese waters, including the area encompassed by the proposed extension of the Portuguese continental shelf and the Economic Exclusive Zone (EEZ). The list is based on historical literature records and taxon occurrence data obtained from natural history collections, together with new revisions and occurrences. -
Proceedings of the United States National Museum
A REVIEW OF THE SPARID^ AND RELATED FAMILIES OF PERCH-LIKE FISHES FOUND IN THE WATERS OF JAPAN. By David Starr Jordan and William Francis Thompson, Of Stanford University, California. In the present paper is given a review of the species of fishes belonging to those percomorphoiis famihes alUed to the Sparoid fishes, or fishes related to the tai or porgy of the waters of Japan, which have not been hitherto discussed in these pages by the senior author and his associates. The families of Kuldiidse, Priacanthidse, Theraponidse, Banjosidae, Hsemulidae, Sparidse, Kyphosidse, and Ery- thrichthyidse are thus included. The paper is based on material collected in Japan in 1900 by Pro- fessors Jordan and Snyder and now divided between the United States National Museum and the museum of Stanford University. Most of the cuts are from drawings by Mr. Sekko Shimada. The families here named are adopted provisionally only. The dis- tinctions between Sparidse, Haemulidse, Lutianidae, and their relatives are of doubtful value, while at present no definite boundaries can be assigned to the Serranidse. L Family KUHLIID.^. Body oblong, strongly compressed; scales large, cihated. Lateral line complete, the tubes straight and occupying the half or more of the exposed surface of the scale. Mouth rather large, protractile; maxillary exposed, without supplemental bone; teeth in jaws in villi- form bands; teeth on vomer, palatines, entopterygoids, and ecto- pterygoids; tongue smooth; head partly naked; preorbital and pre- opercle denticulate; opercle with 2 spines. Gill membranes separate; 6 branchiostegals; pseudobranchise large; gill-rakers long and slender. Dorsal fms connected at the base, with X, 9 to 13 rays, the spinous portion longer than the soft. -
Sardinella
A CHECK.LIST OF THE FISHES OF INDIA, BURMA AND CEYLON. PART II. CLUPEIFORMES, BATHYCLUPEIFORMES, GALAXIIFORMES, SCOPELIFORMES AND ATELEOPIl~"ORMES. By K. S. l\iISRA, D.Se., F.Z.S., ,,1ssistant Superintendent, Zoological Survey of India, Kaiser Castle, Banaras Gantt. CONTENTS. PAGE. INTRODUOTION •• 382 SYSTEMATIC ACCOUNT 382 Class TELEOSTOMI 382 Subclass ACTINOPTERYGII 382 Order CLUPEIFOR)IES (ISOSPONDYLI, MALACOPTERYGII S. STR., 382 THRISSO)IORPHI). Suborder CLUPEOIDEI .. 382 Superfamily ELOPOIDAE 382 Family ELOPIDAE 382 Elopa 8aurU8 L. 382 Family MEGALOPIDA.E 383 M egalopa cyprinoides (Brouss.) 383 Su perfamily ALBULOIDAE 383 Family ALBULIDAE 383 Albula vulpe8 (L.) 384 Superfamily CLUPEOIDAE ... 384 Family CL UPEIDAE .' 384 SU bfamily DU88umieriini 384- Dussumieria acuta (C.V.) ". 384 Dus8umieria hasselti Blkr. 384 Ehirava jluviatiz.i8 Deraniyagala 385 Stolephorus malabaricu.9 Day 385 Subfamily Clupeini 385 IJarengula, punctata (RUpp.) 385 , Ilarcngula 'l:itteta (C. V .) .. 386 Sardinella albella.<C.V.) 386 Sardinella clupeoides (Blkr.) 387 Sardinella dayi Reg. 387 Saidinella jimbriata (C.V.) .. 387 Sa-rdinella gibbosa (Blkr.) 387 Sarain,ella longiceps C. V. 388 Sardinella melon1#tra (C.) 388 Sard·inella 8inden~i8 (Day) 389 Sardinella sirm (RliPll.) 389 Hilsu U·isha (Ham.) 389 HUsa !'anglt'rta (Blkr.) 390 390 lli/sa tol~ (C.v.) ., . [ 377 ] Q 378 Records of tll.e Indian Museum. [VOL. XLV .P~OE. (}ac1lUsia chapra (Ham.) 391 GadU8ia vari8!Jata (Day) 391 l(owala coval (C.) · . 392 Oarica Bohoma Ham. 392 Ilisha brachllsom:a (Blkr.) .. 3\J2 llisha elongata (Benn.) .. 393 llish.Q jiligera (C. V.) Ii • 393 llislla indica (Swns.) .. 393 ilisha kampeni (Web. & de Bfrt.) 394 llisha leach.enaulti (C.V.) , . -
History of Fishes - Structural Patterns and Trends in Diversification
History of fishes - Structural Patterns and Trends in Diversification AGNATHANS = Jawless • Class – Pteraspidomorphi • Class – Myxini?? (living) • Class – Cephalaspidomorphi – Osteostraci – Anaspidiformes – Petromyzontiformes (living) Major Groups of Agnathans • 1. Osteostracida 2. Anaspida 3. Pteraspidomorphida • Hagfish and Lamprey = traditionally together in cyclostomata Jaws = GNATHOSTOMES • Gnathostomes: the jawed fishes -good evidence for gnathostome monophyly. • 4 major groups of jawed vertebrates: Extinct Acanthodii and Placodermi (know) Living Chondrichthyes and Osteichthyes • Living Chondrichthyans - usually divided into Selachii or Elasmobranchi (sharks and rays) and Holocephali (chimeroids). • • Living Osteichthyans commonly regarded as forming two major groups ‑ – Actinopterygii – Ray finned fish – Sarcopterygii (coelacanths, lungfish, Tetrapods). • SARCOPTERYGII = Coelacanths + (Dipnoi = Lung-fish) + Rhipidistian (Osteolepimorphi) = Tetrapod Ancestors (Eusthenopteron) Close to tetrapods Lungfish - Dipnoi • Three genera, Africa+Australian+South American ACTINOPTERYGII Bichirs – Cladistia = POLYPTERIFORMES Notable exception = Cladistia – Polypterus (bichirs) - Represented by 10 FW species - tropical Africa and one species - Erpetoichthys calabaricus – reedfish. Highly aberrant Cladistia - numerous uniquely derived features – long, independent evolution: – Strange dorsal finlets, Series spiracular ossicles, Peculiar urohyal bone and parasphenoid • But retain # primitive Actinopterygian features = heavy ganoid scales (external