Cloning and Characterization of Human IC53-2, a Novel CDK5 Acti- Vator Binding Protein

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Cloning and Characterization of Human IC53-2, a Novel CDK5 Acti- Vator Binding Protein Cell Research (2003); 13(2):83-91 http://www.cell-research.com Cloning and characterization of human IC53-2, a novel CDK5 acti- vator binding protein 1 1 2 1 1 1 YI HU XIE , XIANG HUO HE , YUN TIAN TANG , JIN JUN LI , ZHI MEI PAN , WEN XIN QIN , DA FANG 1* 1* WAN , JIAN REN GU 1 State Key Laboratory of Oncogenes and Related Genes, Shanghai Cancer Institute, Shanghai 200032, China 2 Peopele's Hospital of Guangxi Zhuang Autonomous Region, Nanning 530021, China ABSTRACT We have identified IC53-2, a human homologue of the rat C53 gene from a human placenta cDNA library (GeneBank Accession No.AF217982). IC53-2 can bind to the CDK5 activator p35 by in vitro association assay. IC53-2 is mapped to human chromosome 17q21.31. The IC53-2 transcript is highly expressed in kidney, liver, skeletal muscle and placenta. It is abundantly expressed in SMMC-7721, C-33A, 3AO, A431 and MCF-7 cancer cell lines by RT-PCR assay. Stable transfection of IC53-2 cDNA into the hepatocellular carcinoma SMMC-7721 cell remarkably stimulates its growth in vitro. The above results indicate that IC53- 2 is a novel human gene, which may be involved in the regulation of cell proliferation. Key words: IC53-2, CDK5, p35, hepatocellular carcinoma, proliferation. INTRODUCTION in some oncogenic pathways. In particular, recent data have highlighted the importance of the p53 and Hepatocellular carcinoma (HCC) is one of the Rb pathways in mediation of HCC cell proliferation most prevalent malignant diseases worldwide. It is [7, 8]. There are some regions that display high score the fifth most common cancer and ranks fourth in of loss of heterozygosity (LOH) in HCC cells. For mortality rate, behind lung, stomach and colon can- example, the LOH region within chromosome 17p13. cers[1, 2]. HCC is a leading cause for cancer-related 3 in human HCC in China, and some HCC related deaths in many countries, mainly in Asia and Africa genes have been identified from this region[9-11]. [3]. HCC has been ranked second cause of cancer Identification of novel molecules that regulate HCC death in China since 1990s[4]. It appears to be ris- cell proliferation could improve our understanding ing in incidence in the United States and other de- of the regulatory networks and lead to novel diag- veloped western countries[5]. Although the major nosis and treatment decisions. viral and environmental risk factors for the devel- The eukaryotic cell cycle is controlled by a fam- opment of HCC have been determined, the molecu- ily of serine/threonine kinases called cyclin-depen- lar mechanisms that contribute to tumor progres- dent kinases (CDKs). All family members share sion in hepatocarcinogenesis remain unknown[6]. greater than 40% sequence identity, and associate The proliferation of HCC cells is strictly regulated with a cyclin regulatory subunit. Cdc2 kinase in fis- by many negative or positive mediators. Recently, sion yeast is one of the earliest identified CDK genes, several tumor suppressor genes have been clarified which performs rate-limiting functions in both G1/ * Correspondence: Prof. Da Fang WAN, Jian Ren GU S and G2/M checkpoint transition. In mammalian Tel: 0086-21-64177401 Fax: 0086-21-64177401 cells, the homologue of cdc2, CDKs controls the en- E-mail: [email protected] Received Oct-23-2002 Revised Dec-19-2002 Accepted Jan-9-2003 try of S phase and M phase by differentially inter- Cloning and characterization of human IC53-2 tially identified by biochemical purification from BLAST algorithm through the National Center for Biotechnology bovine brain and by virtue of its close sequence ho- Information web server (http://www.ncbi.nlm.nih.gov/BLAST). mology to human CDK2. CDK5 is a proline-directed Multiple sequence alignments were made at http://www.ebi.ac.uk/ clustalw/index.html (Fig 1D). kinase that phosphorylates serine or threonine im- mediately upstream of a proline residue. The best Northern blot analysis known role for CDK5 is in neuronal cell Hybridization was carried out on human normal Multiple differentiation. There is also evidence that links Tissue Northern Blot membrane (Clontech) as suggested by the CDK5 activity to the regulation of cytoskeleton, axon manufacturer. The IC53-2 cDNA probe was labeled with [α-32P] guidance, membrane transport, synaptic function, dCTP by rediprime II random primer labeling system (Amersham dopamine signaling and drug addiction[13]. Pharmacia Biotech). Northern blot membrane were prehybridized at 68oC for 1 h in ExpressHyb hybridization solution (Clontech) Like other CDKs, monomeric CDK5 shows no with 0.1 μg/ml denatured and sheared salmon sperm DNA. Then, enzymatic activity and requires association with a hybridization was performed at 68oC for 2 h in ExpressHyb regulatory partner for activation. The active form of hybridization solution plus the specific radiolabelled probes pre- CDK5 was shown to be a heterodimer of CDK5 and pared before. Membrane washing and autoradiography were done a 25 KDa regulatory protein[14]. The regulatory according to the published methods[17]. subunit was subsequently shown to be a truncated In vitro association assay form of a 35 KDa protein now known as neuronal CDK5 activator, P35[15]. By using the yeast two- cDNA encoding p35, p25 and p10 were subcloned into the eukaryotic expression vector pcDNA3.1/HA2 respectively. They hybrid screen, several P35-associated proteins were are designated HA2-p35, HA2-p25, HA2-p10. IC53-2 cDNA con- isolated, one of which is C53. Chen et al[16] iso- taining the complete coding sequence (bp 1595-2441) was pre- lated an isoform of C53 from a human aorta cDNA pared by PCR and subcloned into the eukaryotic expression vec- library, called IC53. In this study, we cloned an- tor pcDNA4/HisMax-TOPO (Invitrogen) and verified by other isoform of C53 from a human placenta cDNA sequencing. The following primers were used for PCR library, named it as isoform 2 of C53 (IC53-2). The amplification: forward primer (5'-ATGC- TGCGGTTCGTGCAGAAGCGG-3', bp1595-1618) and reversed expression of IC53-2 was detected by Northern blot primer (5'-TCACAGAGAGGTTCCCATCAGGTTC-3', bp2417- in eight human tissues and RT-PCR in eight cell 2441). There is a Xpress Tag on the pcDNA4/ HisMax-TOPO lines. In vitro association assay indicate that IC53-2 vector, so we designated it as Xpress-IC53-2. The plasmid DNA can bind to p35 and p25. A preliminary study showed was extracted and purified with the Qiagen plasmid purification that IC53-2 protein was able to stimulate the growth kit. HA2-p35, HA2-p25, HA2-p10 and Xpress-IC53-2 were tran- scribed and translated in vitro by using the TNT Quick Coupled of human hepatocellular carcinoma SMMC-7721 cell Transcription/Translation System (Promega, Madison, Wis.) with in vitro. We also discuss here the biological impor- [35S] methionine (Amersham Pharmacia Biotech) in accordance tance of IC53-2. with the manufacturer's instruction. Then, 10 l IC53-2 reaction product was mixed with 10 μl reaction product of p35, p25, p10 MATERIALS AND METHODS respectively. The 20 μl reaction product mixture was incubated in TNT buffer (20 mM Tris-HCl, 200 mM NaCl, 1% Triton X-100) Cloning of full-length IC53-2 cDNA with anti-Xpress monocolonal antibody (Invitrogen) and 20 μl of A cDNA fragment of 2265bp (bp 564-2828 in Fig 1A) was protein A/G PLUS agarose (Santa Cruz Biotechnology). After identified from a human placenta cDNA library by expressed se- incubation at 4oC for 2 h, the protein A/G PLUS agarose beads were quence tag (EST) direct sequencing. The cDNA was called PP1553 washed three times with 0.6 ml of the TNT buffer. Then, the (GeneBank Accession No. AF217982). By searching the public proteins were solubilized in sodium dodecyl sulfate (SDS) sample dbEST, the 5'-UTR (Untranslated Region) of PP1553 is incomplete, buffer, subjected to SDS/12% PAGE, and visualized by we carry out PCR using forward primer (5'- autoradiography. GGGCGGGCCACAGTCTCCAGCCT-3', bp1-23 in Fig 1A and F1 in Fig 1B) and reverse primer (5'- Cell culture TCAACAGAGCACACAACTGACTCTC-3', bp1595-1619 in Fig Eight cell lines were used in the study: human hepatocellular 1A and R1 in Fig 1B) based on the EST contig to get the 5'-UTR carcinoma cell line SMMC-7721, human normal hepatocyte cell of IC53-2. line L-02, human umbilical vein endothelial cell-derived cell line ECV304, human epithelial cervix carcinoma cell line C-33A, hu- Sequence analysis man cervix carcinoma cell line HeLa, human ovary adenocarci- Homology comparisons between species were performed using noma cell line 3AO, human epidermoid carcinoma cell line A431 84 Yi Hu XIE et al and human breast adenocarcinoma cell line MCF-7. These cells 96 well assay plate containing the samples in 100ml of cultured o o were incubated in 5% CO2 at 37 C and cultured in DMEM (Dulbecco's medium and incubated for 1 h at 37 C in a humidified, 5% CO2 Modified Eagle Medium) with 10% fetal bovine serum (GibcoBRL), atmosphere. The absorbance at 490 nm was read using a Model- 100 g/ml penicillin, and 100 g/ml streptomycin sulfate. 550 ELISA plate reader (Bio-Rad). A growth curve with the ab- sorbance of the MTS assay for the conversion of MTS to formazan RNA isolation and RT-PCR analysis was directly correlated with the number of living cells in culture. Total RNA from 107 cells was extracted using the Trizol The experiment was triplicate-performed independently. reagent (GibcoBRL) and treated with DNase I (TaKaRa). RNA quality was checked by electrophoresis in 1.5% agarose/formal- Immunoblots dehyde denaturing gel. cDNA was prepared from 5 g total SDS-polyacrylamide gel electrophoresis was performed in 12% RNA, using the SuperScript II reverse trancriptase suggested by vertical slab gels.
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