Natural Isoprenoids Are Able to Reduce Inflammation in a Mouse
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PRODUCT INFORMATION Geranyl Pyrophosphate (Triammonium Salt) Item No
PRODUCT INFORMATION Geranyl Pyrophosphate (triammonium salt) Item No. 63320 CAS Registry No.: 116057-55-7 Formal Name: 3E,7-dimethyl-2,6-octadienyl- diphosphoric acid, triammonium salt Synonyms: GDP, Geranyl Diphosphate, GPP MF: C10H20O7P2 · 3NH3 FW: 365.3 O O Purity: ≥90% (NH +) – O P O P O Supplied as: A solution in methanol 4 3 Storage: -20°C O– O– Stability: ≥2 years Information represents the product specifications. Batch specific analytical results are provided on each certificate of analysis. Laboratory Procedures Geranyl pyrophosphate (triammonium salt) is supplied as a solution in methanol. To change the solvent, simply evaporate the methanol under a gentle stream of nitrogen and immediately add the solvent of choice. A stock solution may be made by dissoving the geranyl pyrophosphate (triammonium salt) in the solvent of choice. Geranyl pyrophosphate (triammonium salt) is slightly soluble in water. Description Geranyl pyrophosphate is an intermediate in the mevalonate pathway. It is formed from dimethylallyl pyrophosphate (DMAPP; Item No. 63180) and isopentenyl pyrophosphate by geranyl pyrophosphate synthase.1 Geranyl pyrophosphate is used in the biosynthesis of farnesyl pyrophosphate (Item No. 63250), geranylgeranyl pyrophosphate (Item No. 63330), cholesterol, terpenes, and terpenoids. Reference 1. Dorsey, J.K., Dorsey, J.A. and Porter, J.W. The purification and properties of pig liver geranyl pyrophosphate synthetase. J. Biol. Chem. 241(22), 5353-5360 (1966). WARNING CAYMAN CHEMICAL THIS PRODUCT IS FOR RESEARCH ONLY - NOT FOR HUMAN OR VETERINARY DIAGNOSTIC OR THERAPEUTIC USE. 1180 EAST ELLSWORTH RD SAFETY DATA ANN ARBOR, MI 48108 · USA This material should be considered hazardous until further information becomes available. -
Lanosterol 14Α-Demethylase (CYP51)
463 Lanosterol 14-demethylase (CYP51), NADPH–cytochrome P450 reductase and squalene synthase in spermatogenesis: late spermatids of the rat express proteins needed to synthesize follicular fluid meiosis activating sterol G Majdicˇ, M Parvinen1, A Bellamine2, H J Harwood Jr3, WWKu3, M R Waterman2 and D Rozman4 Veterinary Faculty, Clinic of Reproduction, Cesta v Mestni log 47a, 1000 Ljubljana, Slovenia 1Institute of Biomedicine, Department of Anatomy, University of Turku, Kiinamyllynkatu 10, FIN-20520 Turku, Finland 2Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee 37232–0146, USA 3Pfizer Central Research, Department of Metabolic Diseases, Box No. 0438, Eastern Point Road, Groton, Connecticut 06340, USA 4Institute of Biochemistry, Medical Center for Molecular Biology, Medical Faculty University of Ljubljana, Vrazov trg 2, SI-1000 Ljubljana, Slovenia (Requests for offprints should be addressed to D Rozman; Email: [email protected]) (G Majdicˇ is now at Department of Internal Medicine, UT Southwestern Medical Center, Dallas, Texas 75235–8857, USA) Abstract Lanosterol 14-demethylase (CYP51) is a cytochrome detected in step 3–19 spermatids, with large amounts in P450 enzyme involved primarily in cholesterol biosynthe- the cytoplasm/residual bodies of step 19 spermatids, where sis. CYP51 in the presence of NADPH–cytochrome P450 P450 reductase was also observed. Squalene synthase was reductase converts lanosterol to follicular fluid meiosis immunodetected in step 2–15 spermatids of the rat, activating sterol (FF-MAS), an intermediate of cholesterol indicating that squalene synthase and CYP51 proteins are biosynthesis which accumulates in gonads and has an not equally expressed in same stages of spermatogenesis. additional function as oocyte meiosis-activating substance. -
• Our Bodies Make All the Cholesterol We Need. • 85 % of Our Blood
• Our bodies make all the cholesterol we need. • 85 % of our blood cholesterol level is endogenous • 15 % = dietary from meat, poultry, fish, seafood and dairy products. • It's possible for some people to eat foods high in cholesterol and still have low blood cholesterol levels. • Likewise, it's possible to eat foods low in cholesterol and have a high blood cholesterol level SYNTHESIS OF CHOLESTEROL • LOCATION • All tissues • Liver • Cortex of adrenal gland • Gonads • Smooth endoplasmic reticulum Cholesterol biosynthesis and degradation • Diet: only found in animal fat • Biosynthesis: primarily synthesized in the liver from acetyl-coA; biosynthesis is inhibited by LDL uptake • Degradation: only occurs in the liver • Cholesterol is only synthesized by animals • Although de novo synthesis of cholesterol occurs in/ by almost all tissues in humans, the capacity is greatest in liver, intestine, adrenal cortex, and reproductive tissues, including ovaries, testes, and placenta. • Most de novo synthesis occurs in the liver, where cholesterol is synthesized from acetyl-CoA in the cytoplasm. • Biosynthesis in the liver accounts for approximately 10%, and in the intestines approximately 15%, of the amount produced each day. • Since cholesterol is not synthesized in plants; vegetables & fruits play a major role in low cholesterol diets. • As previously mentioned, cholesterol biosynthesis is necessary for membrane synthesis, and as a precursor for steroid synthesis including steroid hormone and vitamin D production, and bile acid synthesis, in the liver. • Slightly less than half of the cholesterol in the body derives from biosynthesis de novo. • Most cells derive their cholesterol from LDL or HDL, but some cholesterol may be synthesize: de novo. -
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Combined Biosynthetic and Synthetic Production of Valuable Molecules: A Hybrid Approach to Vitamin E and Novel Ambroxan Derivatives Bertrand T. Adanve Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Graduate School of Arts and Sciences COLUMBIA UNIVERSITY 2015 © 2015 Bertrand T. Adanve All Rights Reserved ABSTRACT Combined Biosynthetic and Synthetic Production of Valuable Molecules: A Hybrid Approach to Vitamin E and Novel Ambroxan Derivatives Bertrand T. Adanve Chapter 1. Introduction Synthetic chemistry has played a pivotal role in the evolution of modern life. More recently, the emerging field of synthetic biology holds the promise to bring about a paradigm shift with designer microbes to renewably synthesize complex molecules in a fraction of the time and cost. Still, given nature’s virtuosity at stitching a staggering palette of carbon frameworks with ease and synthetic chemistry’s superior parsing powers to access a greater number of unnatural end products, a hybrid approach that leverages the respective strengths of the two fields could prove advantageous for the efficient production of valuable natural molecules and their analogs. To demonstrate this approach, from biosynthetic Z,E-farnesol, we produced a library of novel analogs of the commercially important amber fragrance Ambrox®, including the first synthetic patchouli scent. Likewise, we produced the valuable tocotrienols from yeast-produced geranylgeraniol in a single step, the first such process of its kind. The novel acid catalyst system that allowed for this unique regioselective cyclization holds promise as an asymmetric proton transfer tool and could open the door to facile asymmetric synthesis of vitamin E and other molecules. -
Hop Aroma and Hoppy Beer Flavor: Chemical Backgrounds and Analytical Tools—A Review
Journal of the American Society of Brewing Chemists The Science of Beer ISSN: 0361-0470 (Print) 1943-7854 (Online) Journal homepage: http://www.tandfonline.com/loi/ujbc20 Hop Aroma and Hoppy Beer Flavor: Chemical Backgrounds and Analytical Tools—A Review Nils Rettberg, Martin Biendl & Leif-Alexander Garbe To cite this article: Nils Rettberg, Martin Biendl & Leif-Alexander Garbe (2018) Hop Aroma and Hoppy Beer Flavor: Chemical Backgrounds and Analytical Tools—A Review , Journal of the American Society of Brewing Chemists, 76:1, 1-20 To link to this article: https://doi.org/10.1080/03610470.2017.1402574 Published online: 27 Feb 2018. Submit your article to this journal Article views: 1464 View Crossmark data Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=ujbc20 JOURNAL OF THE AMERICAN SOCIETY OF BREWING CHEMISTS 2018, VOL. 76, NO. 1, 1–20 https://doi.org/10.1080/03610470.2017.1402574 Hop Aroma and Hoppy Beer Flavor: Chemical Backgrounds and Analytical Tools— A Review Nils Rettberga, Martin Biendlb, and Leif-Alexander Garbec aVersuchs– und Lehranstalt fur€ Brauerei in Berlin (VLB) e.V., Research Institute for Beer and Beverage Analysis, Berlin, Deutschland/Germany; bHHV Hallertauer Hopfenveredelungsgesellschaft m.b.H., Mainburg, Germany; cHochschule Neubrandenburg, Fachbereich Agrarwirtschaft und Lebensmittelwissenschaften, Neubrandenburg, Germany ABSTRACT KEYWORDS Hops are the most complex and costly raw material used in brewing. Their chemical composition depends Aroma; analysis; beer flavor; on genetically controlled factors that essentially distinguish hop varieties and is influenced by environmental gas chromatography; hops factors and post-harvest processing. The volatile fingerprint of hopped beer relates to the quantity and quality of the hop dosage and timing of hop addition, as well as the overall brewing technology applied. -
Relationship to Atherosclerosis
AN ABSTRACT OF THE THESIS OF Marilyn L. Walsh for the degree of Doctor of Philosophy in Biochemistry and Biophysics presented on May 3..2001. Title: Protocols. Pathways. Peptides and Redacted for Privacy Wilbert Gamble The vascular system transports components essential to the survival of the individual and acts as a bamer to substances that may injure the organism. Atherosclerosis is a dynamic, lesion producing disease of the arterial system that compromises the functioning of the organ by occlusive and thrombogenic processes. This investigation was undertaken to elucidate some of the normal biochemical processes related to the development of atherosclerosis. A significant part of the investigation was directed toward developing and combining methods and protocols to obtain the data in a concerted manner. A postmitochondnal supernatant of bovine aorta, usingmevalonate-2-14C as the substrate, was employed in the investigation. Methods included paper, thin layer, and silica gel chromatography; gel filtration, high performance liquid chromatography (HPLC), and mass spectrometry. This current research demonstrated direct incorporation of mevalonate-2- 14Cinto the trans-methyiglutaconic shunt intermediates. The aorta also contains alcohol dehydrogenase activity, which converts dimethylallyl alcohol and isopentenol to dimethylacrylic acid, a constituent of the trans-methylgiutaconate Small, radioactive peptides, named Nketewa as a group, were biosynthesized using mevalonate-2-'4C as the substrate. They were shown to pass through a 1000 D membrane. Acid hydrolysis and dabsyl-HPLC analysis defined the composition of the Nketewa peptides. One such peptide, Nketewa 1, had a molecular weight of 1038 and a sequence of his-gly-val-cys-phe-ala-ser-met (HGVCFASM), with afarnesyl group linked via thioether linkage to the cysteine residue. -
Olefin Isomers of a Triazole Bisphosphonate Synergistically Inhibit Geranylgeranyl Diphosphate Synthase S
Supplemental material to this article can be found at: http://molpharm.aspetjournals.org/content/suppl/2017/01/05/mol.116.107326.DC1 1521-0111/91/3/229–236$25.00 http://dx.doi.org/10.1124/mol.116.107326 MOLECULAR PHARMACOLOGY Mol Pharmacol 91:229–236, March 2017 Copyright ª 2017 by The American Society for Pharmacology and Experimental Therapeutics Olefin Isomers of a Triazole Bisphosphonate Synergistically Inhibit Geranylgeranyl Diphosphate Synthase s Cheryl Allen, Sandhya Kortagere, Huaxiang Tong, Robert A. Matthiesen, Joseph I. Metzger, David F. Wiemer, and Sarah A. Holstein Department of Medicine, Roswell Park Cancer Institute, Buffalo, New York (C.A.); Department of Microbiology and Immunology, Drexel University College of Medicine, Philadelphia, Pennsylvania (S.K.); Penn State Cancer Institute, Hershey, Pennsylvania (H. T.); Department of Chemistry, University of Iowa, Iowa City, Iowa (R.A.M., J.I.M., D.F.W.); and Department of Internal Medicine, University of Nebraska Medical Center, Omaha, Nebraska (S.A.H.) Downloaded from Received November 3, 2016; accepted December 28, 2016 ABSTRACT The isoprenoid donor for protein geranylgeranylation reactions, in which cells were treated with varying concentrations of each geranylgeranyl diphosphate (GGDP), is the product of the isomer alone and in different combinations revealed that the enzyme GGDP synthase (GGDPS) that condenses farnesyl two isomers potentiate the induced-inhibition of protein ger- molpharm.aspetjournals.org diphosphate (FDP) and isopentenyl pyrophosphate. GGDPS anylgeranylation when used in a 3:1 HG:HN combination. A inhibition is of interest from a therapeutic perspective for synergistic interaction was observed between the two isomers multiple myeloma because we have shown that targeting Rab in the GGDPS enzyme assay. -
Mevalonate Kinase Deficiency: Therapeutic Targets, Treatments, and Outcomes
Expert Opinion on Orphan Drugs ISSN: (Print) 2167-8707 (Online) Journal homepage: http://www.tandfonline.com/loi/ieod20 Mevalonate kinase deficiency: therapeutic targets, treatments, and outcomes Annalisa Marcuzzi, Elisa Piscianz, Liza Vecchi Brumatti & Alberto Tommasini To cite this article: Annalisa Marcuzzi, Elisa Piscianz, Liza Vecchi Brumatti & Alberto Tommasini (2017): Mevalonate kinase deficiency: therapeutic targets, treatments, and outcomes, Expert Opinion on Orphan Drugs, DOI: 10.1080/21678707.2017.1328308 To link to this article: http://dx.doi.org/10.1080/21678707.2017.1328308 Accepted author version posted online: 08 May 2017. Submit your article to this journal View related articles View Crossmark data Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=ieod20 Download by: [The UC San Diego Library] Date: 12 May 2017, At: 02:40 Publisher: Taylor & Francis Journal: Expert Opinion on Orphan Drugs DOI: 10.1080/21678707.2017.1328308 Mevalonate kinase deficiency: therapeutic targets, treatments, and outcomes Annalisa Marcuzzi1, Piscianz Elisa1, Liza Vecchi Brumatti2, Alberto Tommasini2 1 Department of Medicine, Surgery, and Health Sciences, University of Trieste, Strada di Fiume, 447 Trieste, Italy. 34128 Trieste, Italy; 2 Institute for Maternal and Child Health – IRCCS "Burlo Garofolo", via dell’Istria, 65/1, 34137 Trieste, Italy. Annalisa Marcuzzi: BSc, PhD, Piscianz Elisa: BSc, PhD, Liza Vecchi Brumatti: MSc Alberto Tommasini: MD, PhD, Author to whom correspondence should be addressed: E-Mail: [email protected] Tel.: +39 040 3785422. Article highlights. • Mevalonate Kinase Deficiency (MKD) is a neglected disease with onset in infancy. • MKD clinical picture is characterized by recurrent fever attacks, abdominal pain arthralgia, lymphadenopathy and, in the most severe case, neurological involvement. -
Escherichia Coli
Zada et al. Biotechnol Biofuels (2018) 11:210 https://doi.org/10.1186/s13068-018-1210-0 Biotechnology for Biofuels RESEARCH Open Access Metabolic engineering of Escherichia coli for production of mixed isoprenoid alcohols and their derivatives Bakht Zada1†, Chonglong Wang2†, Ji‑Bin Park1, Seong‑Hee Jeong1, Ju‑Eon Park1, Hawaibam Birla Singh1 and Seon‑Won Kim1* Abstract Background: Current petroleum-derived fuels such as gasoline (C5–C12) and diesel (C15–C22) are complex mixtures of hydrocarbons with diferent chain lengths and chemical structures. Isoprenoids are hydrocarbon-based compounds with diferent carbon chain lengths and diverse chemical structures, similar to petroleum. Thus, isoprenoid alcohols such as isopentenol (C5), geraniol (C10), and farnesol (C15) have been considered to be ideal biofuel candidates. NudB, a native phosphatase of Escherichia coli, is reported to dephosphorylate isopentenyl diphosphate (IPP) and dimethy‑ lallyl diphosphate (DMAPP) into isopentenol. However, no attention has been paid to its promiscuous activity toward longer chain length (C10–C15) prenyl diphosphates. Results: In this study, the promiscuous activity of NudB toward geranyl diphosphate (GPP) and farnesyl diphosphate (FPP) was applied for the production of isoprenoid alcohol mixtures, including isopentenol, geraniol, and farnesol, and their derivatives. E. coli was engineered to produce a mixture of C5 and C15 alcohols by overexpressing NudB (dihy‑ droneopterin triphosphate diphosphohydrolase) and IspA (FPP synthase) along with a heterologous MVA pathway, which resulted in a total of up to 1652 mg/L mixture of C5 and C15 alcohols and their derivatives. The production was further increased to 2027 mg/L by overexpression of another endogenous phosphatase, AphA, in addition to NudB. -
Wöhler Synthesis of Urea
Wöhler synthesis of urea Wöhler, 1928 – – + + NH Cl + K N C O 4 NH4 N C O O H2N NH2 Friedrich Wöhler Annalen der Physik und Chemie 1828, 88, 253–256 Significance: Wöhler was the first to make an organic substance from an inorganic substance. This was the beginning of the end of the theory of vitalism: the idea that organic and inorganic materials differed essentially by the presence of the “vital force”– present only in organic material. To his mentor Berzelius:“I can make urea without thereby needing to have kidneys, or anyhow, an animal, be it human or dog" Friedrich Wöhler, 1880-1882 Polytechnic School in Berlin Support for vitalism remained until 1845, when Kolbe synthesized acetic acid Polytechnic School at Kassel from carbon disulfide University of Göttingen Fischer synthesis of glucose PhHN N O N O NHPh Br aq. HCl Δ PhNH2NH2 HO H HO H O Br "α−acrose" H OH H OH H OH H OH CH2OH CH2OH α−acrosazone α−acrosone an “osazone” (osazone test for reducing sugars) Zn/AcOH OH OH CO2H CHO O HO H HO H OH Br2 HO H HO H Na-Hg HO H HNO3 HO H H OH H OH H OH H OH then resolve H O+ H OH via strychnine H OH H OH 3 H OH CH2OH salts CH2OH CH OH CH2OH 2 D-Mannonic acid DL-Mannose DL-Mannitol DL-Fructose quinoline • Established stereochemical relationship CO2H CHO H OH H OH between mannose and glucose Na-Hg HO H HO H (part of Fischer proof) H OH + H OH H3O • work mechanisms from acrosazone on H OH H OH Emil Fischer, 1852-1919 CH2OH CH2OH University of Munich (1875-81) D-Gluconic acid D-Glucose University of Erlangen (1881-88) University of Würzburg (1888-92) University of Berlin (1892-1919) Fischer, E. -
Prenol Nomenclature Recommendations 1986
Eur. J. Biochem. 167,181 -184 (1987) 0 FEBS 1987 EJB - 870270 IUPAC-IUB Joint Commission on Biochemical Nomenclature (JCBN) Prenol nomenclature Recommendations 1986 CONTENTS The carbon atoms along the main chain are numbered Introduction ................................. 181 from C-1, the atom that carries the hydroxyl group (C-15.11 General terms ................................ 181 of ref. 8). The methyl group carried by atom C-3 contains Pr-1. Prenol. .............................. 181 atom C-3l, that carried by atom C-7 contains atom C-7l, etc. Pr-2. Polyprenol ........................... 181 Pr-3. Esters and their derivatives . 181 Note Pr-4. Number of residues ....... 181 Stereochemistry ................. 181 This use of superscript numbers is based on section TP-2.1 Pr-5. Double bonds. ............ 181 of the recommendations for the nomenclature of tetrapyrroles Pr-6. Order of stereochemical prefixes. ............ 182 [9]. In the printing of these recommendations in the European Pr-7. Multiplicative prefixes ................... 182 Journal of Biochemistry the relevant paragraph was acci- Spec fie compounds ............................. 182 dentally transposed to the caption of Table 2. Pr-8. Trivial names ......................... 182 The repeating CsHs unit (inside the brackets of structure Pr-9. Isopentenyl diphosphate .................. 184 Pr-10. Relationship between polyprenols and isoprenoids 184 Z) is termed an isoprene unit or an isoprene residue. Prenols Pr-1 1. Juvenile hormones ...................... 184 and their esters are precursors of a variety of compounds, Pr-12. Dolichols ............................ 184 including terpenes and steroids, that have much of the carbon References ............... .............. 184 skeleton intact. Such compounds are known as isoprenoids. INTRODUCTION Pr-2. Polyprenol. Polyprenols represent a subgroup of pre- nols. The term polyprenol, already widely used (e. -
Yeast Metabolic Engineering for Production of Farnesol and Geranylgeraniol
Yeast Metabolic Engineering for Production of Farnesol and Geranylgeraniol Bio-Technical Resources (BTR) www.biotechresources.com 1035 S 7th Street, Manitowoc, WI 54220 Phone: (920) 684-5518 Fax: (920) 684-5519 Email: [email protected] Isoprenoids Pathways v Isoprenoids: • Most diverse group of naturally occurring compounds • Derived from 5-carbon molecule isopentenyl pyrophosphate (IPP) v Two distinct pathways for IPP synthesis: • Acetyl-CoA to mevalonate, to IPP • Non-mevalonate pathway: Glyceraladehyde-3-P and pyruvate to deoxyxylolose-5-P, to IPP • S. cerevisiae, mevalonate-dependent pathway v IPP monomers are condensed to form isoprenoids of different lengths: including valuable molecules such as carotenoids, ubiquinones, steroids, precursors for vitamin synthesis, and pharmaceuticals (CoQ10) v BTR’s focus: production farnesol and geranylgeraniol 2 Generation of Squalene Synthase Mutants Using Classical Mutagenesis and Screening ATCC 28383, haploid wild type strain. Mutagenize with nitrous acid v Yeast normally cannot take up exogenous sterols unless grown under anaerobic conditions. Plate on YPD +cholesterol +nystatin. Incubate at 28o C v Isolated ergosterol-dependent mutants o Replica plate survivors to YPD. Incubate at 36 C • Mutation in ERG9 (coding for squalene synthase) Isolate mutants that do not grow in the absence of cholesterol. Screen • Uncharacterized mutation(s) that for isoprenoid accumulation using tube cultures confer the ability to take up sterols under aerobic conditions, referred as sue (Sterol Uptake Identified three strains that exhibited significant Enhancement) farnesol accumulation under aerobic conditions 3 ERG9 Mutants: MBNA1-1, 1-9, 1-13 3 Wild type and erg9 Mutant in Fed Batch Fermentations 4 MBNA1-13 in Fed Batch Fermentation v Farnesol accumulated rapidly during the growth phases and accumulation continued during the non-growth phase.