Isoprene Rule Revisited 242:2 R9–R22 Endocrinology REVIEW Terpenes, Hormones and Life: Isoprene Rule Revisited
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Combined Biosynthetic and Synthetic Production of Valuable Molecules: A Hybrid Approach to Vitamin E and Novel Ambroxan Derivatives Bertrand T. Adanve Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Graduate School of Arts and Sciences COLUMBIA UNIVERSITY 2015 © 2015 Bertrand T. Adanve All Rights Reserved ABSTRACT Combined Biosynthetic and Synthetic Production of Valuable Molecules: A Hybrid Approach to Vitamin E and Novel Ambroxan Derivatives Bertrand T. Adanve Chapter 1. Introduction Synthetic chemistry has played a pivotal role in the evolution of modern life. More recently, the emerging field of synthetic biology holds the promise to bring about a paradigm shift with designer microbes to renewably synthesize complex molecules in a fraction of the time and cost. Still, given nature’s virtuosity at stitching a staggering palette of carbon frameworks with ease and synthetic chemistry’s superior parsing powers to access a greater number of unnatural end products, a hybrid approach that leverages the respective strengths of the two fields could prove advantageous for the efficient production of valuable natural molecules and their analogs. To demonstrate this approach, from biosynthetic Z,E-farnesol, we produced a library of novel analogs of the commercially important amber fragrance Ambrox®, including the first synthetic patchouli scent. Likewise, we produced the valuable tocotrienols from yeast-produced geranylgeraniol in a single step, the first such process of its kind. The novel acid catalyst system that allowed for this unique regioselective cyclization holds promise as an asymmetric proton transfer tool and could open the door to facile asymmetric synthesis of vitamin E and other molecules. -
Meet Lycopene Prostate Cancer Is One of the Leading Causes of Cancer Death Among Men in the United States
UCLA Nutrition Noteworthy Title Lycopene and Mr. Prostate: Best Friends Forever Permalink https://escholarship.org/uc/item/5ks510rw Journal Nutrition Noteworthy, 5(1) Author Simzar, Soheil Publication Date 2002 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Meet Lycopene Prostate cancer is one of the leading causes of cancer death among men in the United States. Dietary factors are considered an important risk factor for the development of prostate cancer in addition to age, genetic predisposition, environmental factors, and other lifestyle factors such as smoking. Recent studies have indicated that there is a direct correlation between the occurrence of prostate cancer and the consumption of tomatoes and tomato-based products. Lycopene, one of over 600 carotenoids, is one of the main carotenoids found in human plasma and it is responsible for the red pigment found in tomatoes and other foods such as watermelons and red grapefruits. It has been shown to be a very potent antioxidant, with oxygen-quenching ability greater than any other carotenoid. Recent research has indicated that its antioxidant effects help lower the risk of heart disease, atherosclerosis, and different types of cancer-especially prostate cancer. Lycopene's Characteristics Lycopene is on of approximately 600 known carotenoids. Carotenoids are red, yellow, and orange pigments which are widely distributed in nature and are especially abundant in yellow- orange fruits and vegetables and dark green, leafy vegetables. They absorb light in the 400- 500nm region which gives them a red/yellow color. Only green plants and certain microorganisms such as fungi and algae can synthesize these pigments. -
Natural Isoprenoids Are Able to Reduce Inflammation in a Mouse
0031-3998/08/6402-0177 Vol. 64, No. 2, 2008 PEDIATRIC RESEARCH Printed in U.S.A. Copyright © 2008 International Pediatric Research Foundation, Inc. Natural Isoprenoids are Able to Reduce Inflammation in a Mouse Model of Mevalonate Kinase Deficiency ANNALISA MARCUZZI, ALESSANDRA PONTILLO, LUIGINA DE LEO, ALBERTO TOMMASINI, GIULIANA DECORTI, TARCISIO NOT, AND ALESSANDRO VENTURA Department of Reproductive and Developmental Sciences [A.M., L.L., A.T., TN, A.V.], Department of Biomedical Sciences [G.D.], University of Trieste, 34137 Trieste, Italy; Paediatric Division [A.P., A.T., T.N., A.V.], Institute of Child Health IRCCS Burlo Garofolo, 34137 Trieste, Italy ABSTRACT: Mevalonate kinase deficiency (MKD) is a rare ataxia, cerebellar atrophy, psychomotor retardation, and may disorder characterized by recurrent inflammatory episodes and, in die in early childhood (1). most severe cases, by psychomotor delay. Defective synthesis of HIDS patients usually are treated with anti-inflammatory isoprenoids has been associated with the inflammatory phenotype drugs and in particular corticosteroids; thalidomide is also in these patients, but the molecular mechanisms involved are still used but its effect is limited (2). In most severe cases, patients poorly understood, and, so far, no specific therapy is available for may benefit from treatment with biologic agents such as this disorder. Drugs like aminobisphosphonates, which inhibit the etanercept and anakinra (1,3–5). No treatment has been mevalonate pathway causing a relative defect in isoprenoids proven effective in curing the neurological symptoms in se- synthesis, have been also associated to an inflammatory pheno- type. Recent data asserted that cell inflammation could be reversed vere cases of MKD. -
Biosynthesis of Natural Products
63 2. Biosynthesis of Natural Products - Terpene Biosynthesis 2.1 Introduction Terpenes are a large and varied class of natural products, produced primarily by a wide variety of plants, insects, microoroganisms and animals. They are the major components of resin, and of turpentine produced from resin. The name "terpene" is derived from the word "turpentine". Terpenes are major biosynthetic building blocks within nearly every living creature. Steroids, for example, are derivatives of the triterpene squalene. When terpenes are modified, such as by oxidation or rearrangement of the carbon skeleton, the resulting compounds are generally referred to as terpenoids. Some authors will use the term terpene to include all terpenoids. Terpenoids are also known as Isoprenoids. Terpenes and terpenoids are the primary constituents of the essential oils of many types of plants and flowers. Essential oils are used widely as natural flavor additives for food, as fragrances in perfumery, and in traditional and alternative medicines such as aromatherapy. Synthetic variations and derivatives of natural terpenes and terpenoids also greatly expand the variety of aromas used in perfumery and flavors used in food additives. Recent estimates suggest that over 30'000 different terpenes have been characterized from natural sources. Early on it was recognized that the majority of terpenoid natural products contain a multiple of 5C-atoms. Hemiterpenes consist of a single isoprene unit, whereas the monoterpenes include e.g.: Monoterpenes CH2OH CHO CH2OH OH Myrcens -
33 34 35 Lipid Synthesis Laptop
BI/CH 422/622 Liver cytosol ANABOLISM OUTLINE: Photosynthesis Carbohydrate Biosynthesis in Animals Biosynthesis of Fatty Acids and Lipids Fatty Acids Triacylglycerides contrasts Membrane lipids location & transport Glycerophospholipids Synthesis Sphingolipids acetyl-CoA carboxylase Isoprene lipids: fatty acid synthase Ketone Bodies ACP priming 4 steps Cholesterol Control of fatty acid metabolism isoprene synth. ACC Joining Reciprocal control of b-ox Cholesterol Synth. Diversification of fatty acids Fates Eicosanoids Cholesterol esters Bile acids Prostaglandins,Thromboxanes, Steroid Hormones and Leukotrienes Metabolism & transport Control ANABOLISM II: Biosynthesis of Fatty Acids & Lipids Lipid Fat Biosynthesis Catabolism Fatty Acid Fatty Acid Synthesis Degradation Ketone body Utilization Isoprene Biosynthesis 1 Cholesterol and Steroid Biosynthesis mevalonate kinase Mevalonate to Activated Isoprenes • Two phosphates are transferred stepwise from ATP to mevalonate. • A third phosphate from ATP is added at the hydroxyl, followed by decarboxylation and elimination catalyzed by pyrophospho- mevalonate decarboxylase creates a pyrophosphorylated 5-C product: D3-isopentyl pyrophosphate (IPP) (isoprene). • Isomerization to a second isoprene dimethylallylpyrophosphate (DMAPP) gives two activated isoprene IPP compounds that act as precursors for D3-isopentyl pyrophosphate Isopentyl-D-pyrophosphate all of the other lipids in this class isomerase DMAPP Cholesterol and Steroid Biosynthesis mevalonate kinase Mevalonate to Activated Isoprenes • Two phosphates -
Use the Right Citrus-Based Cleaning Products to Avoid Corrosion Or Rust Bob Beckley, Project Leader
United States Department of Agriculture Facilities Forest Service Technology & Development Program March 2006 0673–2319–MTDC 7300/7100/5100/2400/2300 Use the Right Citrus-Based Cleaning Products to Avoid Corrosion or Rust Bob Beckley, Project Leader itrus-based cleaning products are commonly found in metal on their chain saws. The crew stopped using citrus-based residential and commercial settings. The ingredients in products because they believed citric acid was causing the these products vary widely (figure 1). While some of damage. However, the damage probably was caused by a C water-based citrus cleaning product. What To Look for in a Citrus-Based Cleaning Product The Material Safety Data Sheets (MSDSs) for chemical products list their ingredients. The MSDS for a citrus-based cleaner should list D-Limonene among the ingredients. D- Limonene is in the terpene family, which includes citrus and pine oils. Terpenes are generally not corrosive or harmful to metals or most plastics and polymers. Terpenes won’t cause rusting, pitting, etching, or staining. Citrus-based terpenes can dissolve heavy petroleum greases and residues in about 30 Figure 1—Citrus-based cleaners are commonly used in residential and minutes when they are used at ambient temperatures. commercial settings, but users often are unaware of the difference between citrus oil-based cleaning products and water-based products. A citrus oil-based cleaning product will not cause corrosion these products can cause corrosion or rust, others do not. The or rust. Such products are made from the oil found in the difference is based on the ingredients. Hundreds of cleaning orange peel, rather than the pulp and juice of the orange. -
Enhanced Lycopene Production in Escherichia Coli by Expression of Two MEP Pathway Enzymes from Vibrio Sp
catalysts Article Enhanced Lycopene Production in Escherichia coli by Expression of Two MEP Pathway Enzymes from Vibrio sp. Dhg 1, 1, 1 1, Min Jae Kim y, Myung Hyun Noh y , Sunghwa Woo , Hyun Gyu Lim * and Gyoo Yeol Jung 1,2,* 1 Department of Chemical Engineering, Pohang University of Science and Technology, 77 Cheongam-Ro, Nam-Gu, Pohang, Gyeongbuk 37673, Korea; [email protected] (M.J.K.); [email protected] (M.H.N.); [email protected] (S.W.) 2 School of Interdisciplinary Bioscience and Bioengineering, Pohang University of Science and Technology, 77 Cheongam-Ro, Nam-Gu, Pohang, Gyeongbuk 37673, Korea * Correspondence: [email protected] (H.G.L.); [email protected] (G.Y.J.); Tel.: +82-54-279-2391 (G.Y.J.) These authors contributed equally to this work. y Received: 28 October 2019; Accepted: 26 November 2019; Published: 29 November 2019 Abstract: Microbial production is a promising method that can overcome major limitations in conventional methods of lycopene production, such as low yields and variations in product quality. Significant efforts have been made to improve lycopene production by engineering either the 2-C-methyl-d-erythritol 4-phosphate (MEP) pathway or mevalonate (MVA) pathway in microorganisms. To further improve lycopene production, it is critical to utilize metabolic enzymes with high specific activities. Two enzymes, 1-deoxy-d-xylulose-5-phosphate synthase (Dxs) and farnesyl diphosphate synthase (IspA), are required in lycopene production using MEP pathway. Here, we evaluated the activities of Dxs and IspA of Vibrio sp. dhg, a newly isolated and fast-growing microorganism. -
Comparison of Biogenic Volatile Organic Compound Emissions from Broad Leaved and Coniferous Trees in Turkey
Environmental Impact II 647 Comparison of biogenic volatile organic compound emissions from broad leaved and coniferous trees in Turkey Y. M. Aydin1, B. Yaman1, H. Koca1, H. Altiok1, Y. Dumanoglu1, M. Kara1, A. Bayram1, D. Tolunay2, M. Odabasi1 & T. Elbir1 1Department of Environmental Engineering, Faculty of Engineering, Dokuz Eylul University, Turkey 2Department of Soil Science and Ecology, Faculty of Forestry, Istanbul University, Turkey Abstract Biogenic volatile organic compound (BVOC) emissions from thirty-eight tree species (twenty broad leaved and eighteen coniferous) grown in Turkey were measured. BVOC samples were collected with a specialized dynamic enclosure technique in forest areas where these tree species are naturally grown. In this method, the branches were enclosed in transparent nalofan bags maintaining their natural conditions and avoiding any source of stress. The air samples from the inlet and outlet of the bags were collected on an adsorbent tube containing Tenax. Samples were analyzed using a thermal desorption (TD) and gas chromatography mass spectrometry (GC/MS) system. Sixty-five BVOC compounds were analyzed in five major groups: isoprene, monoterpenes, sesquiterpens, oxygenated sesquiterpenes and other oxygenated VOCs. Emission factors were calculated and adjusted to standard conditions (1000 μmol/m2 s photosynthetically active radiation-PAR and 30°C temperature). Consistent with the literature, broad leaved trees emitted mainly isoprene while the coniferous trees emitted mainly monoterpenes. Even though fir species are coniferous trees, they emitted significant amounts of isoprene in addition to monoterpenes. Oak species showed a large inter-species variability in their emissions. Pine species emitted mainly monoterpenes and substantial amounts of oxygenated compounds. Keywords: BVOC emissions, dynamic enclosure system, emission factor, Turkey. -
(C5–C20) Emissions of Downy Birches
Atmos. Chem. Phys., 21, 8045–8066, 2021 https://doi.org/10.5194/acp-21-8045-2021 © Author(s) 2021. This work is distributed under the Creative Commons Attribution 4.0 License. Sesquiterpenes and oxygenated sesquiterpenes dominate the VOC (C5–C20) emissions of downy birches Heidi Hellén1, Arnaud P. Praplan1, Toni Tykkä1, Aku Helin1, Simon Schallhart1, Piia P. Schiestl-Aalto2,3,4, Jaana Bäck2,3, and Hannele Hakola1 1Atmospheric Composition Research Unit, Finnish Meteorological Institute, P.O. Box 503, 00101 Helsinki, Finland 2Institute for Atmospheric and Earth System Research/Forest Sciences, Helsinki, Finland 3Faculty of Agriculture and Forestry, University of Helsinki, Helsinki, Finland 4Department of Forest Ecology and Management, SLU, 901 83 Umeå, Sweden Correspondence: Heidi Hellén (heidi.hellen@fmi.fi) Received: 2 December 2020 – Discussion started: 16 December 2020 Revised: 23 March 2021 – Accepted: 28 April 2021 – Published: 26 May 2021 Abstract. Biogenic volatile organic compounds (BVOCs) 24 % and 17 % of the total SQT and OSQT emissions, re- emitted by the forests are known to have strong impacts in spectively. A stressed tree growing in a pot was also stud- the atmosphere. However, lots of missing reactivity is found, ied, and high emissions of α-farnesene and an unidentified especially in the forest air. Therefore better characterization SQT were detected together with high emissions of GLVs. of sources and identification/quantification of unknown re- Due to the relatively low volatility and the high reactivity of active compounds is needed. While isoprene and monoter- SQTs and OSQTs, downy birch emissions are expected to pene (MT) emissions of boreal needle trees have been studied have strong impacts on atmospheric chemistry, especially on quite intensively, there is much less knowledge on the emis- secondary organic aerosol (SOA) production. -
Mevalonate Kinase Deficiency: Therapeutic Targets, Treatments, and Outcomes
Expert Opinion on Orphan Drugs ISSN: (Print) 2167-8707 (Online) Journal homepage: http://www.tandfonline.com/loi/ieod20 Mevalonate kinase deficiency: therapeutic targets, treatments, and outcomes Annalisa Marcuzzi, Elisa Piscianz, Liza Vecchi Brumatti & Alberto Tommasini To cite this article: Annalisa Marcuzzi, Elisa Piscianz, Liza Vecchi Brumatti & Alberto Tommasini (2017): Mevalonate kinase deficiency: therapeutic targets, treatments, and outcomes, Expert Opinion on Orphan Drugs, DOI: 10.1080/21678707.2017.1328308 To link to this article: http://dx.doi.org/10.1080/21678707.2017.1328308 Accepted author version posted online: 08 May 2017. Submit your article to this journal View related articles View Crossmark data Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=ieod20 Download by: [The UC San Diego Library] Date: 12 May 2017, At: 02:40 Publisher: Taylor & Francis Journal: Expert Opinion on Orphan Drugs DOI: 10.1080/21678707.2017.1328308 Mevalonate kinase deficiency: therapeutic targets, treatments, and outcomes Annalisa Marcuzzi1, Piscianz Elisa1, Liza Vecchi Brumatti2, Alberto Tommasini2 1 Department of Medicine, Surgery, and Health Sciences, University of Trieste, Strada di Fiume, 447 Trieste, Italy. 34128 Trieste, Italy; 2 Institute for Maternal and Child Health – IRCCS "Burlo Garofolo", via dell’Istria, 65/1, 34137 Trieste, Italy. Annalisa Marcuzzi: BSc, PhD, Piscianz Elisa: BSc, PhD, Liza Vecchi Brumatti: MSc Alberto Tommasini: MD, PhD, Author to whom correspondence should be addressed: E-Mail: [email protected] Tel.: +39 040 3785422. Article highlights. • Mevalonate Kinase Deficiency (MKD) is a neglected disease with onset in infancy. • MKD clinical picture is characterized by recurrent fever attacks, abdominal pain arthralgia, lymphadenopathy and, in the most severe case, neurological involvement. -
Phd Projects at the Institute of Origins
PhD projects at the Institute of Origins. A list of possible PhD projects at the Institute of Origins appear in the following pages. If you have any questions regarding any projects please contact the individual supervisors. Also if you have other suggestions for a project please contact us as well. The chemical composition of star forming regions near and far .................................... 3 ! Modelling the solubilities of organic solids in hydrocarbon liquids: application to the geology and astrobiology of Titan. .................................................................................... 4! Modeling turbulent flows in solar quiescent prominences ...............................................5! The zoo of exo-planets..................................................................................................8! Understanding the formation of heavy negative ions at Titan and Enceladus................9! Mapping anthropogenic versus natural sources of atmospheric CO2 ............................11! Probing Large Scale Structure with High Energy Neutrinos.........................................13! Future Moon Missions and High Energy Neutrinos ......................................................15! Measuring Cosmic Particles and the Upper Atmosphere with LOFAR.........................17! Mimicking planetary environments for assessing the survivability of bacterial organisms within an artificial environmental chamber. A combined planetary atmosphere and microbiological study for exploring panspermia................................ -
Escherichia Coli
Zada et al. Biotechnol Biofuels (2018) 11:210 https://doi.org/10.1186/s13068-018-1210-0 Biotechnology for Biofuels RESEARCH Open Access Metabolic engineering of Escherichia coli for production of mixed isoprenoid alcohols and their derivatives Bakht Zada1†, Chonglong Wang2†, Ji‑Bin Park1, Seong‑Hee Jeong1, Ju‑Eon Park1, Hawaibam Birla Singh1 and Seon‑Won Kim1* Abstract Background: Current petroleum-derived fuels such as gasoline (C5–C12) and diesel (C15–C22) are complex mixtures of hydrocarbons with diferent chain lengths and chemical structures. Isoprenoids are hydrocarbon-based compounds with diferent carbon chain lengths and diverse chemical structures, similar to petroleum. Thus, isoprenoid alcohols such as isopentenol (C5), geraniol (C10), and farnesol (C15) have been considered to be ideal biofuel candidates. NudB, a native phosphatase of Escherichia coli, is reported to dephosphorylate isopentenyl diphosphate (IPP) and dimethy‑ lallyl diphosphate (DMAPP) into isopentenol. However, no attention has been paid to its promiscuous activity toward longer chain length (C10–C15) prenyl diphosphates. Results: In this study, the promiscuous activity of NudB toward geranyl diphosphate (GPP) and farnesyl diphosphate (FPP) was applied for the production of isoprenoid alcohol mixtures, including isopentenol, geraniol, and farnesol, and their derivatives. E. coli was engineered to produce a mixture of C5 and C15 alcohols by overexpressing NudB (dihy‑ droneopterin triphosphate diphosphohydrolase) and IspA (FPP synthase) along with a heterologous MVA pathway, which resulted in a total of up to 1652 mg/L mixture of C5 and C15 alcohols and their derivatives. The production was further increased to 2027 mg/L by overexpression of another endogenous phosphatase, AphA, in addition to NudB.