Clutch Size in Passerines of Southern South America’
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Resolving Phylogenetic Relationships Within Passeriformes Based on Mitochondrial Genes and Inferring the Evolution of Their Mitogenomes in Terms of Duplications
GBE Resolving Phylogenetic Relationships within Passeriformes Based on Mitochondrial Genes and Inferring the Evolution of Their Mitogenomes in Terms of Duplications Paweł Mackiewicz1,*, Adam Dawid Urantowka 2, Aleksandra Kroczak1,2, and Dorota Mackiewicz1 1Department of Bioinformatics and Genomics, Faculty of Biotechnology, University of Wrocław, Poland 2Department of Genetics, Wroclaw University of Environmental and Life Sciences, Poland *Corresponding author: E-mail: pamac@smorfland.uni.wroc.pl. Accepted: September 30, 2019 Abstract Mitochondrial genes are placed on one molecule, which implies that they should carry consistent phylogenetic information. Following this advantage, we present a well-supported phylogeny based on mitochondrial genomes from almost 300 representa- tives of Passeriformes, the most numerous and differentiated Aves order. The analyses resolved the phylogenetic position of para- phyletic Basal and Transitional Oscines. Passerida occurred divided into two groups, one containing Paroidea and Sylvioidea, whereas the other, Passeroidea and Muscicapoidea. Analyses of mitogenomes showed four types of rearrangements including a duplicated control region (CR) with adjacent genes. Mapping the presence and absence of duplications onto the phylogenetic tree revealed that the duplication was the ancestral state for passerines and was maintained in early diverged lineages. Next, the duplication could be lost and occurred independently at least four times according to the most parsimonious scenario. In some lineages, two CR copies have been inherited from an ancient duplication and highly diverged, whereas in others, the second copy became similar to the first one due to concerted evolution. The second CR copies accumulated over twice as many substitutions as the first ones. However, the second CRs were not completely eliminated and were retained for a long time, which suggests that both regions can fulfill an important role in mitogenomes. -
Passerines: Perching Birds
3.9 Orders 9: Passerines – perching birds - Atlas of Birds uncorrected proofs 3.9 Atlas of Birds - Uncorrected proofs Copyrighted Material Passerines: Perching Birds he Passeriformes is by far the largest order of birds, comprising close to 6,000 P Size of order Cardinal virtues Insect-eating voyager Multi-purpose passerine Tspecies. Known loosely as “perching birds”, its members differ from other Number of species in order The Northern or Common Cardinal (Cardinalis cardinalis) The Common Redstart (Phoenicurus phoenicurus) was The Common Magpie (Pica pica) belongs to the crow family orders in various fine anatomical details, and are themselves divided into suborders. Percentage of total bird species belongs to the cardinal family (Cardinalidae) of passerines. once thought to be a member of the thrush family (Corvidae), which includes many of the larger passerines. In simple terms, however, and with a few exceptions, passerines can be described Like the various tanagers, grosbeaks and other members (Turdidae), but is now known to belong to the Old World Like many crows, it is a generalist, with a robust bill adapted of this diverse group, it has a thick, strong bill adapted to flycatchers (Muscicapidae). Its narrow bill is adapted to to feeding on anything from small animals to eggs, carrion, as small birds that sing. feeding on seeds and fruit. Males, from whose vivid red eating insects, and like many insect-eaters that breed in insects, and grain. Crows are among the most intelligent of The word passerine derives from the Latin passer, for sparrow, and indeed a sparrow plumage the family is named, are much more colourful northern Europe and Asia, this species migrates to Sub- birds, and this species is the only non-mammal ever to have is a typical passerine. -
Supplementary Information For
Supplementary Information for Earth history and the passerine superradiation Oliveros, Carl H., Daniel J. Field, Daniel T. Ksepka, F. Keith Barker, Alexandre Aleixo, Michael J. Andersen, Per Alström, Brett W. Benz, Edward L. Braun, Michael J. Braun, Gustavo A. Bravo, Robb T. Brumfield, R. Terry Chesser, Santiago Claramunt, Joel Cracraft, Andrés M. Cuervo, Elizabeth P. Derryberry, Travis C. Glenn, Michael G. Harvey, Peter A. Hosner, Leo Joseph, Rebecca Kimball, Andrew L. Mack, Colin M. Miskelly, A. Townsend Peterson, Mark B. Robbins, Frederick H. Sheldon, Luís Fábio Silveira, Brian T. Smith, Noor D. White, Robert G. Moyle, Brant C. Faircloth Corresponding authors: Carl H. Oliveros, Email: [email protected] Brant C. Faircloth, Email: [email protected] This PDF file includes: Supplementary text Figs. S1 to S10 Table S1 to S3 References for SI reference citations Other supplementary materials for this manuscript include the following: Supplementary Files S1 to S3 1 www.pnas.org/cgi/doi/10.1073/pnas.1813206116 Supplementary Information Text Extended Materials and Methods Library preparation and sequencing. We extracted and purified DNA from fresh muscle tissue, liver tissue, or toepad clips from 113 vouchered museum specimens (Supplementary File S1) using the Qiagen DNeasy Blood and Tissue Kit following the manufacturer’s protocol. We quantified DNA extracts using a Qubit fluorometer, and we prepared aliquots of DNA extracted from muscle and liver at 10 ng/µL in 60 µL volume for shearing. We sheared each DNA sample to 400–600 bp using a Qsonica Q800R sonicator for 15–45 cycles, with each cycle running for 20 seconds on and 20 seconds off at 25% amplitude. -
A Preliminary Study on Population of Some Passeriformes at Marala Head
Journal of Bioresource Management Volume 6 Issue 4 Article 4 A Preliminary Study on Population of Some Passeriformes at Marala Head Zahid Bhatti Center for Bioresource Research (CBR), Islamabad, Pakistan Fakhra Nazir Capital University of Science and Technology, Islamabad, Pakistan, [email protected] Asad Ghufran International Islamic University, Islamabad, Pakistan Follow this and additional works at: https://corescholar.libraries.wright.edu/jbm Part of the Biodiversity Commons, and the Ornithology Commons Recommended Citation Bhatti, Z., Nazir, F., & Ghufran, A. (2019). A Preliminary Study on Population of Some Passeriformes at Marala Head, Journal of Bioresource Management, 6 (4). DOI: https://doi.org/10.35691/JBM.9102.0114 ISSN: 2309-3854 online (Received: Jan 6, 2020; Accepted: Jan 6, 2020; Published: Oct 31, 2019) This Article is brought to you for free and open access by CORE Scholar. It has been accepted for inclusion in Journal of Bioresource Management by an authorized editor of CORE Scholar. For more information, please contact [email protected]. A Preliminary Study on Population of Some Passeriformes at Marala Head © Copyrights of all the papers published in Journal of Bioresource Management are with its publisher, Center for Bioresource Research (CBR) Islamabad, Pakistan. This permits anyone to copy, redistribute, remix, transmit and adapt the work for non-commercial purposes provided the original work and source is appropriately cited. Journal of Bioresource Management does not grant you any other rights in relation to this website or the material on this website. In other words, all other rights are reserved. For the avoidance of doubt, you must not adapt, edit, change, transform, publish, republish, distribute, redistribute, broadcast, rebroadcast or show or play in public this website or the material on this website (in any form or media) without appropriately and conspicuously citing the original work and source or Journal of Bioresource Management’s prior written permission. -
The Incubation Patch in Males of the Suborder Tyranni
218 THE CONDOR . Vol.55 for even superficial examination of some tiger beetles that we collected show that in one species (C&de&r dig&i) the northern and southern populationsare quite distinct. Van Rossem (op. tit.) recordsa total of 82 forms of birds for Tibur6n. We saw but 28 species, six of which, as stated, proved to be new records.A few brief notes on these (new records marked by an asterisk) and on some of the other species,mostly migrants, may be given. Pelecaffus occident&s. Brown Pelican. Extremely abundant. A flock of more than 400 birds was also Presenton a wide gravel bank at the southern end of the Isle de 10sPatos, a small satellite island north of Tiburon. A much larger number was present also on Alcatraz Island, three miles off Kino, where they are said to breed. The Seris considerthe pelican to be good food and until the turn of the century its skin was their only clothing. One of the four Seri clans was named after it. Fregoto magnificens.Man-o ’-war bird. A dozen or so individuals were present‘at the southern end of the island and between this point and Kino Bay on the mainland, but none was seen in the three days at the northern end of the island or in the precedingthree days at Desemhoque. Ardea herodius. Great Blue Heron. Three to four individuals. Egretta thzrla. Snowy Egret. Six to eight individuals. Florid0 coerzdea.Little Blue Heron. One adult. All the herons were observedfeeding on the flats in or near the tidal marsh at Tecomate. -
Earth History and the Passerine Superradiation
Earth history and the passerine superradiation Carl H. Oliverosa,1, Daniel J. Fieldb,c, Daniel T. Ksepkad, F. Keith Barkere,f, Alexandre Aleixog, Michael J. Andersenh,i, Per Alströmj,k,l, Brett W. Benzm,n,o, Edward L. Braunp, Michael J. Braunq,r, Gustavo A. Bravos,t,u, Robb T. Brumfielda,v, R. Terry Chesserw, Santiago Claramuntx,y, Joel Cracraftm, Andrés M. Cuervoz, Elizabeth P. Derryberryaa, Travis C. Glennbb, Michael G. Harveyaa, Peter A. Hosnerq,cc, Leo Josephdd, Rebecca T. Kimballp, Andrew L. Mackee, Colin M. Miskellyff, A. Townsend Petersongg, Mark B. Robbinsgg, Frederick H. Sheldona,v, Luís Fábio Silveirau, Brian Tilston Smithm, Noor D. Whiteq,r, Robert G. Moylegg, and Brant C. Fairclotha,v,1 aDepartment of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803; bDepartment of Biology & Biochemistry, Milner Centre for Evolution, University of Bath, Claverton Down, Bath BA2 7AY, United Kingdom; cDepartment of Earth Sciences, University of Cambridge, Cambridge CB2 3EQ, United Kingdom; dBruce Museum, Greenwich, CT 06830; eDepartment of Ecology, Evolution and Behavior, University of Minnesota, Saint Paul, MN 55108; fBell Museum of Natural History, University of Minnesota, Saint Paul, MN 55108; gDepartment of Zoology, Museu Paraense Emílio Goeldi, São Braz, 66040170 Belém, PA, Brazil; hDepartment of Biology, University of New Mexico, Albuquerque, NM 87131; iMuseum of Southwestern Biology, University of New Mexico, Albuquerque, NM 87131; jDepartment of Ecology and Genetics, Animal Ecology, Evolutionary Biology Centre, -
The Relationships of the New Zealand Wrens (Acanthisittidae) As Indicated by Dna-Dna Hybridization
THE RELATIONSHIPS OF THE NEW ZEALAND WRENS (ACANTHISITTIDAE) AS INDICATED BY DNA-DNA HYBRIDIZATION By CHARLES G. SIBLEY, GORDON R. WILLIAMS and JON E. AHLQUIST ABSTRACT The relationships of the New Zealand Wrens have been debated for a century but up to 1981 it has not been clear to which suborder of the Passeriformes they should be assigned. Com- parisons between the single-copy DNA sequences of Acanthisitta chloris and those of other passerine birds indicate that the Acan- thisittidae are members of the suboscine suborder Oligomyodi, and that they are sufficiently distant from other suboscine passer- ine~to warrant separation as an Infraorder, Acanthisittides. INTRODUCTION The endemic New Zealand family Acanthisittidae contains four species in two genera. The Rifleman (Acanthisitta chloris) occurs commonly in many parts of the North and South Islands, and Stewart Island, and on some offshore islands. There are no recent records of the Bush Wren (Xenicus longipes), which once occurred on all three main islands. If not now extinct it occurs only in a few remote forested areas. The Rock Wren (X. gilviventris) inhabits rocky terrain in the subalpine and alpine zones of the main South Island mountains, and the Stephens Island Wren (X. lyalli), known only from that small island, has been extinct since 1894. The Rifleman was described as "Sitfa chloris" by Sparrman in 1787 and was assigned to various other genera, including Motacilla, Sylvia, and Acanfhiza, until 1842 when Lafresnaye erected the genus Acanfhisitfa. The distinctive characters of the New Zealand Wrens were discovered by Forbes (1882), who found that the syrinx is located in the bronchi and lacks intrinsic muscles. -
The Cranial Osteology of the New World Tyrannoidea and Its Taxonomic Implications
Louisiana State University LSU Digital Commons LSU Historical Dissertations and Theses Graduate School 1965 The rC anial Osteology of the New World Tyrannoidea and Its Taxonomic Implications. Stuart Lawrence Warter Louisiana State University and Agricultural & Mechanical College Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_disstheses Recommended Citation Warter, Stuart Lawrence, "The rC anial Osteology of the New World Tyrannoidea and Its Taxonomic Implications." (1965). LSU Historical Dissertations and Theses. 1105. https://digitalcommons.lsu.edu/gradschool_disstheses/1105 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Historical Dissertations and Theses by an authorized administrator of LSU Digital Commons. For more information, please contact [email protected]. This dissertation has been microfilmed exactly as received WAKTPR, Stuart lawrciH'c*, lf)M4— TUP CRANIAL OSTPOIAXiY OF TH K NKW WORLD TYRANNOIJ )KA ANU ITS TAXONOMIC IMPLICATIONS. I xjuisiaua State University, Ph.D., 1005 / . o o l o g y University Microiihns, Inc,, Ann Arbor, Michigan THE CRANIAL OSTEOLOGY OF THE NEW WORLD TYRANNOIDEA AND ITS TAXONOMIC IMPLICATIONS A Dissertation Submitted to the Graduate Faculty of the Louisiana State University and Agricultural and Mechanical College in partial fulfillment of the requirements for the degree of Doctor of Philosophy in The Department of Zoology and Physiology by Stuart Lawrence Warter B.S., University of Miami, 1956 M.S., University of Miami, 1958 August, 1965 ACKNOWLEDGMENTS Appreciation 10 expE«*ia*d to the many individuals end organizations that have generously provided assistance in the pursuit and completion of this study. -
Molecular Systematics of New World Suboscine Birds R
Available online at www.sciencedirect.com MOLECULAR SCIENCEENCE^I /W) DIRECT® PHYLOGENETICS AND EVOLUTION ELSEVIER Molecular Phylogenetics and Evolution 32 (2004) 11-24 www.elsevier.com/locate/ympev Molecular systematics of New World suboscine birds R. Terry Chesser* Department of Ornithology, American Museum of Natural History, Central Park West at 79 th Street, New York, NY 10024, USA Received 12 February 2003; revised 14 November 2003 Available online 4 February 2004 Abstract Pliylogenetic relationships among New World suboscine birds were studied using nuclear and mitochondria! DNA sequences. New World suboscines were shown to constitute two distinct lineages, one apparently consisting of the single species Sapayoa aenigma, the other made up of the remaining 1000+ species of New World suboscines. With the exception oí Sapayoa, monophyly of New World suboscines was strongly corroborated, and monophyly within New World suboscines of a tyrannoid clade and a furnarioid clade was likewise strongly supported. Relationships among families and subfamilies within these clades, however, differed in several respects from current classifications of suboscines. Noteworthy results included: (1) monophyly of the tyrant- flycatchers (traditional family Tyrannidae), but only if the tityrines (see below) are excluded; (2) monophyly of the pipromorphine flycatchers (Pipromorphinae of Sibley and Ahlquist, 1990) as one of two primary divisions of a monophyletic restricted Tyrannidae; (3) monophyly of the tityrines, consisting of the genus Tityra plus all sampled species of the Schiffornis group (Prum and Lanyon, 1989), as sister group to the manakins (traditional family Pipridae); (4) paraphyly of the ovenbirds (traditional family Furnariidae), if woodcreepers (traditional family Dendrocolaptidae) are excluded; and (5) polyphyly of the antbirds (traditional family Formi- cariidae) and paraphyly of the ground antbirds (Formicariidae sensu stricto). -
Cracraft2009chap61.Pdf
Passerine birds (Passeriformes) Joel Cracrafta,* and F. Keith Barkerb birds) and its closest relative, the Neoaves. Relationships aDepartment of Ornithology, American Museum of Natural History, within Neoaves have been controversial and di1 cult Central Park West at 79th St., New York, NY 10024, USA; bBell to resolve (5–9). Many workers have placed passeri- Museum of Natural History, University of Minnesota, 1987 Upper forms close to the so-called “higher land birds,” par- Buford Circle, St. Paul, MN 55108, USA ticularly the monophyletic Piciformes and taxa of the *To whom correspondence should be addressed ([email protected]) non- monophyletic “Coraciiformes” (6–11), but some molecular analyses, including DNA hybridization ( 5) Abstract and whole mitochondrial genomes (12), have placed them deeper toward the base of the Neoaves and even— The Order Passeriformes is the largest clade of its rank in because of a very small taxon sample and a spurious birds, encompassing from roughly 40–100 families depend- root—at the base of all birds (13). ing on the classifi cation. In recent years molecular system- 7 e monophyly of the passeriforms has never been atic data have greatly clarifi ed interfamilial relationships, s e r i o us l y q ue s t i o n e d (14). Morphologists of the nine- although many nodes remain poorly supported and it is teenth century used syringeal characters to establish the clear that numerous traditional families are not mono- major oscine/suboscine divisions, and through the twen- phyletic. Passeriformes is an old group, and most molecu- tieth-century systematists (2, 15, 16) carried on the pro- lar dating studies estimate its age of origin to be late cess of clustering groups of families together, primarily Cretaceous (100–66 million years ago, Ma) on Gondwana, on the basis of overall similarity and geography and with- with early lineages being partitioned among New Zealand, out much new character data. -
A Taxonomic List of the Major Groups of Birds -With Indications of North American Families
A Taxonomic List of the Major Groups of Birds -with indications of North American families By David Lahti 2/2016 Following are the major groups of birds, as they have been designated so far, focusing especially on the Orders and Families of the current birds of the world, and designating (with underlines) families represented in North and Violet sabrewing Campylopterus Middle America. hemileucurus (Apodiformes: Trochilidae). Monteverde, Costa Rica (April Lahti, 2008). Avialans and extinct birds: A brief nested lineage is presented initially that starts with the Avialans—those dinosaurs believed to be more closely related to birds than to other dinos such as Deinonychus. Extinct fossil bird groups are presented mostly according to Chiappe (2001, 2002) and Sereno (2005). Until we get to modern birds (Neornithes), I have not represented groups as orders or families, because the most reliable paleontological data is still presented largely only at the level of genus. Some researchers (and researchers from some cultures in particlular) are apt to ascribe order status to their fossil finds, but it is very possible that nearly every genus discovered in the Jurassic and Cretaceous, at least, merits order status. Therefore I have avoided dividing genera into families and orders, and mentioned only the number of genera that have been described. Among modern birds, Neornithes, the vast majority of fossil and subfossil finds are thought to be consistent with contemporary orders; thus only four extinct orders are listed here, each designated by a dagger (†). Two of them (Lithornithiformes and Gastornithiformes) went extinct before the historical period, so are listed in the introductory ancient lineage; the other two (Dinornithiformes and Aepyornithiformes) went extinct in the historical period (because of humans), and so are in the main list. -
BMC Evolutionary Biology
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Copenhagen University Research Information System Convergent evolution, habitat shifts and variable diversification rates in the ovenbird- woodcreeper family (Furnariidae) Irestedt, M.; Fjeldså, Jon; Dalén, L.; Ericson, P.G.P. Published in: BMC Evolutionary Biology DOI: 10.1186/1471-2148-9-268 Publication date: 2009 Document version Publisher's PDF, also known as Version of record Citation for published version (APA): Irestedt, M., Fjeldså, J., Dalén, L., & Ericson, P. G. P. (2009). Convergent evolution, habitat shifts and variable diversification rates in the ovenbird-woodcreeper family (Furnariidae). BMC Evolutionary Biology, 9(268). https://doi.org/10.1186/1471-2148-9-268 Download date: 07. Apr. 2020 BMC Evolutionary Biology BioMed Central Research article Open Access Convergent evolution, habitat shifts and variable diversification rates in the ovenbird-woodcreeper family (Furnariidae) Martin Irestedt*1, Jon Fjeldså2, Love Dalén1 and Per GP Ericson3 Address: 1Molecular Systematics Laboratory, Swedish Museum of Natural History, PO Box 50007, SE-10405 Stockholm, Sweden, 2Zoological Museum, University of Copenhagen, Universitetsparken 15, DK-2100 Copenhagen, Denmark and 3Department of Vertebrate Zoology, Swedish Museum of Natural History, PO Box 50007, SE-10405 Stockholm, Sweden Email: Martin Irestedt* - [email protected]; Jon Fjeldså - [email protected]; Love Dalén - [email protected]; Per GP Ericson - [email protected] * Corresponding author Published: 21 November 2009 Received: 22 January 2009 Accepted: 21 November 2009 BMC Evolutionary Biology 2009, 9:268 doi:10.1186/1471-2148-9-268 This article is available from: http://www.biomedcentral.com/1471-2148/9/268 © 2009 Irestedt et al; licensee BioMed Central Ltd.