Protists Chapter 28
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Morphology, Phylogeny, and Diversity of Trichonympha (Parabasalia: Hypermastigida) of the Wood-Feeding Cockroach Cryptocercus Punctulatus
J. Eukaryot. Microbiol., 56(4), 2009 pp. 305–313 r 2009 The Author(s) Journal compilation r 2009 by the International Society of Protistologists DOI: 10.1111/j.1550-7408.2009.00406.x Morphology, Phylogeny, and Diversity of Trichonympha (Parabasalia: Hypermastigida) of the Wood-Feeding Cockroach Cryptocercus punctulatus KEVIN J. CARPENTER, LAWRENCE CHOW and PATRICK J. KEELING Canadian Institute for Advanced Research, Botany Department, University of British Columbia, University Boulevard, Vancouver, BC, Canada V6T 1Z4 ABSTRACT. Trichonympha is one of the most complex and visually striking of the hypermastigote parabasalids—a group of anaerobic flagellates found exclusively in hindguts of lower termites and the wood-feeding cockroach Cryptocercus—but it is one of only two genera common to both groups of insects. We investigated Trichonympha of Cryptocercus using light and electron microscopy (scanning and transmission), as well as molecular phylogeny, to gain a better understanding of its morphology, diversity, and evolution. Microscopy reveals numerous new features, such as previously undetected bacterial surface symbionts, adhesion of post-rostral flagella, and a dis- tinctive frilled operculum. We also sequenced small subunit rRNA gene from manually isolated species, and carried out an environmental polymerase chain reaction (PCR) survey of Trichonympha diversity, all of which strongly supports monophyly of Trichonympha from Cryptocercus to the exclusion of those sampled from termites. Bayesian and distance methods support a relationship between Tricho- nympha species from termites and Cryptocercus, although likelihood analysis allies the latter with Eucomonymphidae. A monophyletic Trichonympha is of great interest because recent evidence supports a sister relationship between Cryptocercus and termites, suggesting Trichonympha predates the Cryptocercus-termite divergence. -
Suitability of Great South Bay, New York to Blooms of Pfiesteria Piscicida and P
City University of New York (CUNY) CUNY Academic Works School of Arts & Sciences Theses Hunter College Summer 8-10-2015 Suitability of Great South Bay, New York to Blooms of Pfiesteria piscicida and P. shumwayae Prior to Superstorm Sandy, October 29, 2012 Pawel Tomasz Zablocki CUNY Hunter College How does access to this work benefit ou?y Let us know! More information about this work at: https://academicworks.cuny.edu/hc_sas_etds/6 Discover additional works at: https://academicworks.cuny.edu This work is made publicly available by the City University of New York (CUNY). Contact: [email protected] Suitability of Great South Bay, New York, to Blooms of Pfiesteria piscicida and P. shumwayae Prior to Superstorm Sandy, October 29, 2012. By Pawel Zablocki Submitted in partial fulfillment of the requirements for the degree of Master of Arts Hunter College of the City of New York 2015 Thesis sponsor: __25 July 2015 Peter X. Marcotullio Date First Reader _2 August 2015 Karl H. Szekielda Date Second Reader i Acknowledgements I would like to thank my advisor, Professor H. Gong and two of my excellent readers—Professor Peter Marcotullio and Professor Karl Szekielda who provided their invaluable advice, alleviated my concerns, and weathered the avalanche of my questions. ii Abstract of the Thesis Pfiesteria piscicida and P. shumwayae are toxic dinoflagellates implicated in massive fish kills in North Carolina and Maryland during 1990s. A set of physical, chemical, and biological factors influence population dynamics of these organisms. This study employs information gathered from relevant literature on temperature, salinity, dissolved oxygen, pH, turbulent mixing, and dissolved nutrients, bacteria, algae, microzooplankton, mesozooplankton, bivalve mollusks, finfish, and other toxic dinoflagellates, which influence Pfiesteria population dynamics. -
The Planktonic Protist Interactome: Where Do We Stand After a Century of Research?
bioRxiv preprint doi: https://doi.org/10.1101/587352; this version posted May 2, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Bjorbækmo et al., 23.03.2019 – preprint copy - BioRxiv The planktonic protist interactome: where do we stand after a century of research? Marit F. Markussen Bjorbækmo1*, Andreas Evenstad1* and Line Lieblein Røsæg1*, Anders K. Krabberød1**, and Ramiro Logares2,1** 1 University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N- 0316 Oslo, Norway 2 Institut de Ciències del Mar (CSIC), Passeig Marítim de la Barceloneta, 37-49, ES-08003, Barcelona, Catalonia, Spain * The three authors contributed equally ** Corresponding authors: Ramiro Logares: Institute of Marine Sciences (ICM-CSIC), Passeig Marítim de la Barceloneta 37-49, 08003, Barcelona, Catalonia, Spain. Phone: 34-93-2309500; Fax: 34-93-2309555. [email protected] Anders K. Krabberød: University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N-0316 Oslo, Norway. Phone +47 22845986, Fax: +47 22854726. [email protected] Abstract Microbial interactions are crucial for Earth ecosystem function, yet our knowledge about them is limited and has so far mainly existed as scattered records. Here, we have surveyed the literature involving planktonic protist interactions and gathered the information in a manually curated Protist Interaction DAtabase (PIDA). In total, we have registered ~2,500 ecological interactions from ~500 publications, spanning the last 150 years. -
The Florida Red Tide Dinoflagellate Karenia Brevis
G Model HARALG-488; No of Pages 11 Harmful Algae xxx (2009) xxx–xxx Contents lists available at ScienceDirect Harmful Algae journal homepage: www.elsevier.com/locate/hal Review The Florida red tide dinoflagellate Karenia brevis: New insights into cellular and molecular processes underlying bloom dynamics Frances M. Van Dolah a,*, Kristy B. Lidie a, Emily A. Monroe a, Debashish Bhattacharya b, Lisa Campbell c, Gregory J. Doucette a, Daniel Kamykowski d a Marine Biotoxins Program, NOAA Center for Coastal Environmental Health and Biomolecular Resarch, Charleston, SC, United States b Department of Biological Sciences and Roy J. Carver Center for Comparative Genomics, University of Iowa, Iowa City, IA, United States c Department of Oceanography, Texas A&M University, College Station, TX, United States d Department of Marine, Earth and Atmospheric Sciences, North Carolina State University, Raleigh, NC, United States ARTICLE INFO ABSTRACT Article history: The dinoflagellate Karenia brevis is responsible for nearly annual red tides in the Gulf of Mexico that Available online xxx cause extensive marine mortalities and human illness due to the production of brevetoxins. Although the mechanisms regulating its bloom dynamics and toxicity have received considerable attention, Keywords: investigation into these processes at the cellular and molecular level has only begun in earnest during Bacterial–algal interactions the past decade. This review provides an overview of the recent advances in our understanding of the Cell cycle cellular and molecular biology on K. brevis. Several molecular resources developed for K. brevis, including Dinoflagellate cDNA and genomic DNA libraries, DNA microarrays, metagenomic libraries, and probes for population Florida red tide genetics, have revolutionized our ability to investigate fundamental questions about K. -
Evidence Against Production of Ichthyotoxins by Pfiesteria Shumwayae
Are Pfiesteria species toxicogenic? Evidence against production of ichthyotoxins by Pfiesteria shumwayae J. P. Berry*, K. S. Reece†, K. S. Rein‡, D. G. Baden§, L. W. Haas†, W. L. Ribeiro†, J. D. Shields†, R. V. Snyder‡, W. K. Vogelbein†, and R. E. Gawley*¶ *Department of Chemistry͞National Institute of Environmental Health Sciences, Marine and Freshwater Biomedical Science Center, University of Miami, P.O. Box 249118, Coral Gables, FL 33124; †Virginia Institute of Marine Science, College of William and Mary, Route 1208, Gloucester Point, VA 23062; ‡Department of Chemistry, Florida International University, 11200 SW 8th Street, Miami, FL 33199; and §Center for Marine Science, University of North Carolina, 5600 Marvin K. Moss Lane, Wilmington, NC 28409 Edited by John H. Law, University of Arizona, Tucson, AZ, and approved May 29, 2002 (received for review April 12, 2002) The estuarine genus Pfiesteria has received considerable attention Materials and Methods since it was first identified and proposed to be the causative agent Dinoflagellate Cultures. A clonal isolate of Pfiesteria shumwayae of fish kills along the mid-Atlantic coast in 1992. The presumption [Center for Culture of Marine Phytoplankton (CCMP) 2089] was has been that the mechanism of fish death is by release of one or maintained in cultures as described below. The identity of more toxins by the dinoflagellate. In this report, we challenge the P. shumwayae was confirmed additionally by PCR using notion that Pfiesteria species produce ichthyotoxins. Specifically, species-specific primers for regions of the ribosomal RNA we show that (i) simple centrifugation, with and without ultra- gene complex (29). sonication, is sufficient to ‘‘detoxify’’ water of actively fish-killing Algal prey. -
Trichonympha Burlesquei N. Sp. from Reticulitermes Virginicus and Evidence Against a Cosmopolitan Distribution of Trichonympha Agilis in Many Termite Hosts
International Journal of Systematic and Evolutionary Microbiology (2013), 63, 3873–3876 DOI 10.1099/ijs.0.054874-0 Trichonympha burlesquei n. sp. from Reticulitermes virginicus and evidence against a cosmopolitan distribution of Trichonympha agilis in many termite hosts Erick R. James,1 Vera Tai,1 Rudolf H. Scheffrahn2 and Patrick J. Keeling1 Correspondence 1Canadian Institute for Advanced Research, Department of Botany, University of British Columbia, Patrick J. Keeling Vancouver, BC, Canada [email protected] 2University of Florida Research & Education Center, 3205 College Avenue, Davie, FL 33314, USA Historically, symbiotic protists in termite hindguts have been considered to be the same species if they are morphologically similar, even if they are found in different host species. For example, the first-described hindgut and hypermastigote parabasalian, Trichonympha agilis (Leidy, 1877) has since been documented in six species of Reticulitermes, in addition to the original discovery in Reticulitermes flavipes. Here we revisit one of these, Reticulitermes virginicus, using molecular phylogenetic analysis from single-cell isolates and show that the Trichonympha in R. virginicus is distinct from isolates in the type host and describe this novel species as Trichonympha burlesquei n. sp. We also show the molecular diversity of Trichonympha from the type host R. flavipes is greater than supposed, itself probably representing more than one species. All of this is consistent with recent data suggesting a major underestimate of termite symbiont diversity. Members of the genus Trichonympha are large and species of termite: in practice, similar-looking symbionts of structurally complex parabasalians exclusively found in the genus Trichonympha from different termite species are the symbiotic, lignocellulose-digesting hindgut community assumed to be the same species. -
Molecular Characterization and Phylogeny of Four New Species of the Genus Trichonympha (Parabasalia, Trichonymphea) from Lower Termite Hindguts
TAXONOMIC DESCRIPTION Boscaro et al., Int J Syst Evol Microbiol 2017;67:3570–3575 DOI 10.1099/ijsem.0.002169 Molecular characterization and phylogeny of four new species of the genus Trichonympha (Parabasalia, Trichonymphea) from lower termite hindguts Vittorio Boscaro,1,* Erick R. James,1 Rebecca Fiorito,1 Elisabeth Hehenberger,1 Anna Karnkowska,1,2 Javier del Campo,1 Martin Kolisko,1,3 Nicholas A. T. Irwin,1 Varsha Mathur,1 Rudolf H. Scheffrahn4 and Patrick J. Keeling1 Abstract Members of the genus Trichonympha are among the most well-known, recognizable and widely distributed parabasalian symbionts of lower termites and the wood-eating cockroach species of the genus Cryptocercus. Nevertheless, the species diversity of this genus is largely unknown. Molecular data have shown that the superficial morphological similarities traditionally used to identify species are inadequate, and have challenged the view that the same species of the genus Trichonympha can occur in many different host species. Ambiguities in the literature, uncertainty in identification of both symbiont and host, and incomplete samplings are limiting our understanding of the systematics, ecology and evolution of this taxon. Here we describe four closely related novel species of the genus Trichonympha collected from South American and Australian lower termites: Trichonympha hueyi sp. nov. from Rugitermes laticollis, Trichonympha deweyi sp. nov. from Glyptotermes brevicornis, Trichonympha louiei sp. nov. from Calcaritermes temnocephalus and Trichonympha webbyae sp. nov. from Rugitermes bicolor. We provide molecular barcodes to identify both the symbionts and their hosts, and infer the phylogeny of the genus Trichonympha based on small subunit rRNA gene sequences. The analysis confirms the considerable divergence of symbionts of members of the genus Cryptocercus, and shows that the two clades of the genus Trichonympha harboured by termites reflect only in part the phylogeny of their hosts. -
CH28 PROTISTS.Pptx
9/29/14 Biosc 41 Announcements 9/29 Review: History of Life v Quick review followed by lecture quiz (history & v How long ago is Earth thought to have formed? phylogeny) v What is thought to have been the first genetic material? v Lecture: Protists v Are we tetrapods? v Lab: Protozoa (animal-like protists) v Most atmospheric oxygen comes from photosynthesis v Lab exam 1 is Wed! (does not cover today’s lab) § Since many of the first organisms were photosynthetic (i.e. cyanobacteria), a LOT of excess oxygen accumulated (O2 revolution) § Some organisms adapted to use it (aerobic respiration) Review: History of Life Review: Phylogeny v Which organelles are thought to have originated as v Homology is similarity due to shared ancestry endosymbionts? v Analogy is similarity due to convergent evolution v During what event did fossils resembling modern taxa suddenly appear en masse? v A valid clade is monophyletic, meaning it consists of the ancestor taxon and all its descendants v How many mass extinctions seem to have occurred during v A paraphyletic grouping consists of an ancestral species and Earth’s history? Describe one? some, but not all, of the descendants v When is adaptive radiation likely to occur? v A polyphyletic grouping includes distantly related species but does not include their most recent common ancestor v Maximum parsimony assumes the tree requiring the fewest evolutionary events is most likely Quiz 3 (History and Phylogeny) BIOSC 041 1. How long ago is Earth thought to have formed? 2. Why might many organisms have evolved to use aerobic respiration? PROTISTS! Reference: Chapter 28 3. -
Waterborne Pathogens in Agricultural Watersheds
United States Department of Waterborne Pathogens in Agriculture Natural Resources Agricultural Watersheds Conservation Service Watershed Science by Barry H. Rosen Institute NRCS, Watershed Science Institute School of Natural Resources University of Vermont, Burlington Contents Introduction ..................................................... 1 Pathogens of concern ..................................... 3 Pathogens in the environment .....................22 Control methods............................................ 33 Monitoring and evaluation ........................... 43 Anticipated developments ........................... 47 Summary ........................................................ 48 Glossary .......................................................... 49 References...................................................... 52 With contributions by Richard Croft, Natural Resources Conservation Service (retired) Edward R. Atwill, D.V.M., Ph.D., School of Veterinary Medicine, University of California-Davis, 18830 Road 112, Tulare, California Susan Stehman, V.M.D., Senior Extension Veterinarian, New York State Diagnostic Laboratory, College of Veterinary Medicine, Cornell University, Ithaca, New York Susan Wade, Ph.D., Director Parasitology Laboratory, New York State Diagnostic Laboratory, College of Veterinary Medicine, Cornell University, Ithaca, New York Issued June 2000 The United States Department of Agriculture (USDA) prohibits discrimi- nation in all its programs and activities on the basis of race, color, na- tional origin, gender, -
Grazing of Two Euplotid Ciliates on the Heterotrophic Dinoflagellates Pfiesteria Piscicida and Cryptoperidiniopsis Sp
AQUATIC MICROBIAL ECOLOGY Vol. 33: 303–308, 2003 Published November 7 Aquat Microb Ecol NOTE Grazing of two euplotid ciliates on the heterotrophic dinoflagellates Pfiesteria piscicida and Cryptoperidiniopsis sp. Scott G. Gransden1, Alan J. Lewitus1, 2,* 1Belle W. Baruch Institute for Marine and Coastal Science, University of South Carolina, PO Box 1630, Georgetown, South Carolina 29442, USA 2Marine Resources Research Institute, SC Department of Natural Resources, Hollings Marine Laboratory, 331 Fort Johnson Road, Charleston, South Carolina 29412, USA ABSTRACT: Pfiesteria piscicida and Cryptoperidiniopsis spp. breaks have been associated with millions of dollars of are common co-occurring heterotrophic dinoflagellates in lost revenue to the fisheries and tourism industries estuaries along the Atlantic coast of the United States. We (Burkholder & Glasgow 1997, CENR 2000). isolated P. piscicida, Cryptoperidiniopsis sp., and 2 benthic ciliates (Euplotes vannus and E. woodruffi) from North Inlet Increased awareness of Pfiesteria spp.’s potential estuary, South Carolina, and examined the growth and graz- impact on environmental and human health has led ing properties of the ciliates on cultures of the dinoflagellates to several studies on the dinoflagellates’ trophic dy- maintained with cryptophyte (Storeatula major) prey. Ciliate namics. Ingestion of P. piscicida by copepods, rotifers, growth and grazing parameters on cryptophyte monocultures or benthic ciliates has been reported (Burkholder & and mixed diets of cryptophytes and P. piscicida were signifi- cantly higher with E. woodruffi than E. vannus. Also, the net Glasgow 1995, Mallin et al. 1995). More recently, grazing impact of E. woodruffi on P. piscicida prey was higher Stoecker et al. (2000) added 5-chloromethylfluorescein than the impact on Cryptoperidiniopsis sp., while the E. -
Chapter 6.2-Assessment of Harmful Algae Bloom
Maryland’s Coastal Bays: Ecosystem Health Assessment Chapter 6.2 Chapter 6.2 Assessment of harmful algae bloom species in the Maryland Coastal Bays Catherine Wazniak Maryland Department of Natural Resources, Tidewater Ecosystem Assessment, Annapolis, MD 21401 Abstract Thirteen potentially harmful algae taxa have been identified in the Maryland Coastal Bays: Aureococcus anophagefferens (brown tide), Pfiesteria piscicida and P. shumwayae, Chloromorum/ Chattonella spp., Heterosigma akashiwo, Fibrocapsa japonica, Prorocentrum minimum, Dinophysis spp., Amphidinium spp., Pseudo-nitzchia spp., Karlodinium micrum and two macroalgae genera (Gracilaria, Chaetomorpha). Presence of potentially toxic species is richest in the polluted tributaries of St. Martin River and Newport Bay. Approximately 5% of the phytoplankton species identified for Maryland’s Coastal Bays represent potentially harmful algal bloom (HAB) species. The HABs are recognized for their potentially toxic properties and, in some cases, their ability to produce large blooms negatively affecting light and dissolved oxygen resources. Brown tide (Aureococcus anophagefferens) has been the most widespread and prolific HAB species in the area in recent years, producing growth impacts to juvenile clams in test studies and potential impacts to sea grass distribution and growth (see Chapter 7.1). Macroalgal fluctuations may be evidence of a system balancing on the edge of a eutrophic (nutrient- enriched) state (see chapter 4). No evidence of toxic activity has been detected among the Coastal Bays phytoplankton. However, species such as Pseudo-nitzschia seriata, Prorocentrum minimum, Pfiesteria piscicida, Dinophysis acuminata and Karlodinium micrum have produced positive toxic bioassays or generated detectable toxins in Chesapeake Bay. Pfiesteria piscicida was retrospectively considered as the likely causative organism in a large historical fish kill on the Indian River, Delaware. -
Trichonympha Cf
MOLECULAR PHYLOGENETICS OF TRICHONYMPHA CF. COLLARIS AND A PUTATIVE PYRSONYMPHID: THE RELEVANCE TO THE ORIGIN OF SEX by JOEL BRYAN DACKS B.Sc. The University of Alberta, 1995 A THESIS SUBMITTED IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER'S OF SCIENCE in THE FACULTY OF GRADUATE STUDIES (Department of Zoology) We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA April 1998 © Joel Bryan Dacks, 1998 In presenting this thesis in partial fulfilment of the requirements for an advanced degree at the University of British Columbia, I agree that the Library shall make it freely available for reference and study. I further agree that permission for extensive copying of this thesis for scholarly purposes may be granted by the head of my department or by his or her representatives. It is understood that copying or publication of this thesis for financial gain shall not be allowed without my written permission. Department of ~2—oc)^Oa^ The University of British Columbia Vancouver, Canada Date {X^ZY Z- V. /^P DE-6 (2/88) Abstract Why sex evolved is one of the central questions in evolutionary genetics. To address this question I have undertaken a molecular phylogenetic study of two candidate lineages to determine the first sexual line. In my thesis the hypermastigotes are confirmed as closely related to the trichomonads in the phylum Parabasalia and found to be more deeply divergent than a putative pyrsonymphid. This means that the Parabasalia are the first sexual lineage. From this I go on to infer that the ancestral sexual cycle included facultative sex.