Chapter 7 Substitution Reactions 7.1 Introduction to Substitution Reactions Substitution Reactions: Two Reactants Exchange Parts to Give New Products
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Elimination Reactions E1, E2, E1cb and Ei
Elimination Reactions Dr. H. Ghosh Surendranath College, Kol-9 ________________________________________________ E1, E2, E1cB and Ei (pyrolytic syn eliminations); formation of alkenes and alkynes; mechanisms (with evidence), reactivity, regioselectivity (Saytzeff/Hofmann) and stereoselectivity; comparison between substitution and elimination. Substitution Reactions Elimination Reactions Elimination happens when the nucleophile attacks hydrogen instead of carbon Strong Base favor Elimination Bulky Nucleophile/Base favor Elimination High Temperature favors Elimination We know- This equation says that a reaction in which ΔS is positive is more thermodynamically favorable at higher temperature. Eliminations should therefore be favoured at high temperature Keep in Mind---- Mechanism Classification E1 Mechanism- Elimination Unimolecular E1 describes an elimination reaction (E) in which the rate-determining step is unimolecular (1) and does not involve the base. The leaving group leaves in this step, and the proton is removed in a separate second step E2 Mechanism- Elimination Bimolecular E2 describes an elimination (E) that has a bimolecular (2) rate-determining step that must involve the base. Loss of the leaving group is simultaneous with removal of the proton by the base Bulky t-butoxide—ideal for promoting E2 as it’s both bulky and a strong base (pKaH = 18). Other Organic Base used in Elimination Reaction These two bases are amidines—delocalization of one nitrogen’s lone pair on to the other, and the resulting stabilization of the protonated amidinium ion, E1 can occur only with substrates that can ionize to give relatively stable carbocations—tertiary, allylic or benzylic alkyl halides, for example. E1-Elimination Reaction not possible here The role of the leaving group Since the leaving group is involved in the rate-determining step of both E1 and E2, in general, any good leaving group will lead to a fast elimination. -
Chapter 12 Lecture Notes
Chemical Kinetics “The study of speeds of reactions and the nanoscale pathways or rearrangements by which atoms and molecules are transformed to products” Chapter 13: Chemical Kinetics: Rates of Reactions © 2008 Brooks/Cole 1 © 2008 Brooks/Cole 2 Reaction Rate Reaction Rate Combustion of Fe(s) powder: © 2008 Brooks/Cole 3 © 2008 Brooks/Cole 4 Reaction Rate Reaction Rate + Change in [reactant] or [product] per unit time. Average rate of the Cv reaction can be calculated: Time, t [Cv+] Average rate + Cresol violet (Cv ; a dye) decomposes in NaOH(aq): (s) (mol / L) (mol L-1 s-1) 0.0 5.000 x 10-5 13.2 x 10-7 10.0 3.680 x 10-5 9.70 x 10-7 20.0 2.710 x 10-5 7.20 x 10-7 30.0 1.990 x 10-5 5.30 x 10-7 40.0 1.460 x 10-5 3.82 x 10-7 + - 50.0 1.078 x 10-5 Cv (aq) + OH (aq) → CvOH(aq) 2.85 x 10-7 60.0 0.793 x 10-5 -7 + + -5 1.82 x 10 change in concentration of Cv Δ [Cv ] 80.0 0.429 x 10 rate = = 0.99 x 10-7 elapsed time Δt 100.0 0.232 x 10-5 © 2008 Brooks/Cole 5 © 2008 Brooks/Cole 6 1 Reaction Rates and Stoichiometry Reaction Rates and Stoichiometry Cv+(aq) + OH-(aq) → CvOH(aq) For any general reaction: a A + b B c C + d D Stoichiometry: The overall rate of reaction is: Loss of 1 Cv+ → Gain of 1 CvOH Rate of Cv+ loss = Rate of CvOH gain 1 Δ[A] 1 Δ[B] 1 Δ[C] 1 Δ[D] Rate = − = − = + = + Another example: a Δt b Δt c Δt d Δt 2 N2O5(g) 4 NO2(g) + O2(g) Reactants decrease with time. -
Solvent Effects on Structure and Reaction Mechanism: a Theoretical Study of [2 + 2] Polar Cycloaddition Between Ketene and Imine
J. Phys. Chem. B 1998, 102, 7877-7881 7877 Solvent Effects on Structure and Reaction Mechanism: A Theoretical Study of [2 + 2] Polar Cycloaddition between Ketene and Imine Thanh N. Truong Henry Eyring Center for Theoretical Chemistry, Department of Chemistry, UniVersity of Utah, Salt Lake City, Utah 84112 ReceiVed: March 25, 1998; In Final Form: July 17, 1998 The effects of aqueous solvent on structures and mechanism of the [2 + 2] cycloaddition between ketene and imine were investigated by using correlated MP2 and MP4 levels of ab initio molecular orbital theory in conjunction with the dielectric continuum Generalized Conductor-like Screening Model (GCOSMO) for solvation. We found that reactions in the gas phase and in aqueous solution have very different topology on the free energy surfaces but have similar characteristic motion along the reaction coordinate. First, it involves formation of a planar trans-conformation zwitterionic complex, then a rotation of the two moieties to form the cycloaddition product. Aqueous solvent significantly stabilizes the zwitterionic complex, consequently changing the topology of the free energy surface from a gas-phase single barrier (one-step) process to a double barrier (two-step) one with a stable intermediate. Electrostatic solvent-solute interaction was found to be the dominant factor in lowering the activation energy by 4.5 kcal/mol. The present calculated results are consistent with previous experimental data. Introduction Lim and Jorgensen have also carried out free energy perturbation (FEP) theory simulations with accurate force field that includes + [2 2] cycloaddition reactions are useful synthetic routes to solute polarization effects and found even much larger solvent - formation of four-membered rings. -
Solvents and Solvent E¤Ects in Organic Chemistry
Contents 1 Introduction ......................................................... 1 2 Solute-Solvent Interactions ........................................... 7 2.1 Solutions . .......................................................... 7 2.2 Intermolecular Forces . ............................................ 12 2.2.1 Ion-Dipole Forces . ................................................. 13 2.2.2 Dipole-Dipole Forces................................................ 14 2.2.3 Dipole-Induced Dipole Forces ....................................... 15 2.2.4 Instantaneous Dipole-Induced Dipole Forces . ...................... 16 2.2.5 Hydrogen Bonding . ................................................. 17 2.2.6 Electron-Pair Donor/Electron-Pair Acceptor Interactions (EPD/EPA Interactions) . ..................................................... 23 2.2.7 Solvophobic Interactions ............................................ 31 2.3 Solvation . .......................................................... 34 2.4 Preferential Solvation................................................ 43 2.5 Micellar Solvation (Solubilization) ................................... 48 2.6 Ionization and Dissociation . ........................................ 52 3 Classification of Solvents ............................................. 65 3.1 Classification of Solvents according to Chemical Constitution ......... 65 3.2 Classification of Solvents using Physical Constants . .................. 75 3.3 Classification of Solvents in Terms of Acid-Base Behaviour. ......... 88 3.3.1 Brønsted-Lowry -
The Relative Rates of Thiol–Thioester Exchange and Hydrolysis for Alkyl and Aryl Thioalkanoates in Water
Orig Life Evol Biosph (2011) 41:399–412 DOI 10.1007/s11084-011-9243-4 PREBIOTIC CHEMISTRY The Relative Rates of Thiol–Thioester Exchange and Hydrolysis for Alkyl and Aryl Thioalkanoates in Water Paul J. Bracher & Phillip W. Snyder & Brooks R. Bohall & George M. Whitesides Received: 14 April 2011 /Accepted: 16 June 2011 / Published online: 5 July 2011 # Springer Science+Business Media B.V. 2011 Abstract This article reports rate constants for thiol–thioester exchange (kex), and for acid- mediated (ka), base-mediated (kb), and pH-independent (kw) hydrolysis of S-methyl thioacetate and S-phenyl 5-dimethylamino-5-oxo-thiopentanoate—model alkyl and aryl thioalkanoates, respectively—in water. Reactions such as thiol–thioester exchange or aminolysis could have generated molecular complexity on early Earth, but for thioesters to have played important roles in the origin of life, constructive reactions would have needed to compete effectively with hydrolysis under prebiotic conditions. Knowledge of the kinetics of competition between exchange and hydrolysis is also useful in the optimization of systems where exchange is used in applications such as self-assembly or reversible binding. For the alkyl thioester S-methyl thioacetate, which has been synthesized in −5 −1 −1 −1 −1 −1 simulated prebiotic hydrothermal vents, ka = 1.5×10 M s , kb = 1.6×10 M s , and −8 −1 kw = 3.6×10 s . At pH 7 and 23°C, the half-life for hydrolysis is 155 days. The second- order rate constant for thiol–thioester exchange between S-methyl thioacetate and 2- −1 −1 sulfonatoethanethiolate is kex = 1.7 M s . -
Chapter 7, Haloalkanes, Properties and Substitution Reactions of Haloalkanes Table of Contents 1
Chapter 7, Haloalkanes, Properties and Substitution Reactions of Haloalkanes Table of Contents 1. Alkyl Halides (Haloalkane) 2. Nucleophilic Substitution Reactions (SNX, X=1 or 2) 3. Nucleophiles (Acid-Base Chemistry, pka) 4. Leaving Groups (Acid-Base Chemistry, pka) 5. Kinetics of a Nucleophilic Substitution Reaction: An SN2 Reaction 6. A Mechanism for the SN2 Reaction 7. The Stereochemistry of SN2 Reactions 8. A Mechanism for the SN1 Reaction 9. Carbocations, SN1, E1 10. Stereochemistry of SN1 Reactions 11. Factors Affecting the Rates of SN1 and SN2 Reactions 12. --Eliminations, E1 and E2 13. E2 and E1 mechanisms and product predictions In this chapter we will consider: What groups can be replaced (i.e., substituted) or eliminated The various mechanisms by which such processes occur The conditions that can promote such reactions Alkyl Halides (Haloalkane) An alkyl halide has a halogen atom bonded to an sp3-hybridized (tetrahedral) carbon atom The carbon–chlorine and carbon– bromine bonds are polarized because the halogen is more electronegative than carbon The carbon-iodine bond do not have a per- manent dipole, the bond is easily polarizable Iodine is a good leaving group due to its polarizability, i.e. its ability to stabilize a charge due to its large atomic size Generally, a carbon-halogen bond is polar with a partial positive () charge on the carbon and partial negative () charge on the halogen C X X = Cl, Br, I Different Types of Organic Halides Alkyl halides (haloalkanes) sp3-hybridized Attached to Attached to Attached -
Chemistry 0310 - Organic Chemistry 1 Chapter 6
Dr. Peter Wipf Chemistry 0310 - Organic Chemistry 1 Chapter 6. SN2 Reactions Nucleophilic substitution reactions occur when nucleophiles (electron-rich species) displace leaving groups on electrophiles (electron-poor species). The net result is the substitution of one group for another bonded to a carbon atom. Nucleophilicity is increased by a negative charge and an increase in the polarizability. The greater the size and the lower the electronegativity of an atom, the greater its polarizability. Leaving groups are stable species that can be detached with their bonding electrons from a molecule during reaction. Most good leaving groups are the conjugate bases of strong acids. Sulfonates (mesylates, tosylates, triflates, etc.) are popular leaving groups since they can be readily obtained from alcohols. Solvents also influence nucleophilicity. SN2 reactions are second-order reactions whose rates depend o the concentration of both the alkyl halide and the nucleophile. The transition state of the one-step SN2 process involves a trigonal bipyramidal carbon and results in an overall inversion of configuration. The order of reactivity of alkyl halides and alkyl sulfonates in SN2 reactions is CH3>1°>2°>3°. The activation energy, DG‡, determines the rate of a reaction: k = koexp(-DG‡/RT). The overall change in free energy, DG, determines the position of the thermodynamic equilibrium. A positive sign of DG is characteristic for an endergonic reaction, a negative DG is found for an exergonic process. The rate of a reaction can be measured and provides information about its mechanism. The reaction order is the sum of the exponents in the rate equation. Relative Leaving Group Abilities: Leaving Group Common Name krel AcO acetate 1 x 10-10 Cl chloride 0.0001 Br bromide 0.001 I iodide 0.01 O mesylate 1.00 H3C S O O O tosylate 0.70 H3C S O O O brosylate 2.62 Br S O O O nosylate 13 O2N S O O O fluorosulfate 29,000 F S O O O triflate 56,000 CF3 S O O O nonaflate 120,000 C4F9 S O O. -
Ochem ACS Review 23 Aryl Halides
ACS Review Aryl Halides 1. Which one of the following has the weakest carbon-chlorine bond? A. I B. II C. III D. IV 2. Which compound in each of the following pairs is the most reactive to the conditions indicated? A. I and III B. I and IV C. II and III D. II and IV 3. Which of the following reacts at the fastest rate with potassium methoxide (KOCH 3) in methanol? A. fluorobenzene B. 4-nitrofluorobenzene C. 2,4-dinitrofluorobenzene D. 2,4,6-trinitrofluorobenzene 4. Which of the following reacts at the fastest rate with potassium methoxide (KOCH 3) in methanol? A. fluorobenzene B. p-nitrofluorobenzene C. p-fluorotoluene D. p-bromofluorobenzene 5. Which of the following is the kinetic rate equation for the addition-elimination mechanism of nucleophilic aromatic substitution? A. rate = k[aryl halide] B. rate = k[nucleophile] C. rate = k[aryl halide][nucleophile] D. rate = k[aryl halide][nucleophile] 2 6. Which of the following is not a resonance form of the intermediate in the nucleophilic addition of hydroxide ion to para -fluoronitrobenzene? A. I B. II C. III D. IV 7. Which chlorine is most susceptible to nucleophilic substitution with NaOCH 3 in methanol? A. #1 B. #2 C. #1 and #2 are equally susceptible D. no substitution is possible 8. What is the product of the following reaction? A. N,N-dimethylaniline B. para -chloro-N,N-dimethylaniline C. phenyllithium (C 6H5Li) D. meta -chloro-N,N-dimethylaniline 9. Which one of the reagents readily reacts with bromobenzene without heating? A. -
Chemical Kinetics HW1 (Kahn, 2010)
Chemical Kinetics HW1 (Kahn, 2010) Question 1. (6 pts) A reaction with stoichiometry A = P + 2Q was studied by monitoring the concentration of the reactant A as a function of time for eighteen minutes. The concentration determination method had a maximum error of 6 M. The following concentration profile was observed: Time (min) Conc (mM) 1 0.9850 2 0.8571 3 0.7482 4 0.6549 5 0.5885 6 0.5183 7 0.4667 8 0.4281 9 0.3864 10 0.3557 11 0.3259 12 0.3037 13 0.2706 14 0.2486 15 0.2355 16 0.2188 17 0.2111 18 0.1930 Determine the reaction order and calculate the rate constant for decomposition of A. What can be said about the mechanism or molecularity of this reaction? Question 2. (4 pts) Solve problem 2 on pg 31 in your textbook (House) using both linear and non-linear regression. Provide standard errors for the rate constant and half-life based on linear and non-linear fits. Below is the data set for your convenience: dataA = {{0, 0.5}, {10, 0.443}, {20,0.395}, {30,0.348}, {40,0.310}, {50,0.274}, {60,0.24}, {70,0.212}, {80,0.190}, {90,0.171}, {100,0.164}} Question 3. (3 pts) Solve problem 3 on pg 32 in your textbook (House). Question 4. (7 pts) The authors of the paper “Microsecond Folding of the Cold Shock Protein Measured by a Pressure-Jump Technique” suggest that the activated state of folding of CspB follows Hammond- type behavior. -
Bsc Chemistry
Subject Chemistry Paper No and Title 05, ORGANIC CHEMISTRY-II (REACTION MECHANISM-I) Module No and Title 15, The Neighbouring Mechanism, Neighbouring Group Participation by π and σ Bonds Module Tag CHE_P5_M15 CHEMISTRY PAPER :5, ORGANIC CHEMISTRY-II (REACTION MECHANISM-I) MODULE: 15 , The Neighbouring Mechanism, Neighbouring Group Participation by π and σ Bonds TABLE OF CONTENTS 1. Learning Outcomes 2. Introduction 3. NGP Participation 3.1 NGP by Heteroatom Lone Pairs 3.2 NGP by alkene 3.3 NGP by Cyclopropane, Cyclobutane or a Homoallyl group 3.4 NGP by an Aromatic Ring 4. Neighbouring Group Participation on SN2 Reactions 5. Neighbouring Group Participation on SN1 Reactions 6. Neighbouring Group and Rearrangement 7. Examples 8. Summary CHEMISTRY PAPER :5, ORGANIC CHEMISTRY-II (REACTION MECHANISM-I) MODULE: 15 , The Neighbouring Mechanism, Neighbouring Group Participation by π and σ Bonds 1. Learning Outcomes After studying this module, you shall be able to Know about NGP reaction Learn reaction mechanism of NGP reaction Identify stereochemistry of NGP reaction Evaluate the factors affecting the NGP reaction Analyse Phenonium ion, NGP by alkene, and NGP by heteroatom. 2. Introduction The reaction centre (carbenium centre) has direct interaction with a lone pair of electrons of an atom or with the electrons of s- or p-bond present within the parent molecule but these are not in conjugation with the reaction centre. A distinction is sometimes made between n, s and p- participation. An increase in rate due to Neighbouring Group Participation (NGP) is known as "anchimeric assistance". "Synartetic acceleration" happens to be the special case of anchimeric assistance and applies to participation by electrons binding a substituent to a carbon atom in a β- position relative to the leaving group attached to the α-carbon atom. -
Leaving Group of Substrate Important
1 Recap... • Last two lectures we looked at substitution reactions • We found that there we two (extreme) mechanisms • SN1 H H H H H PhS R H R Br R SPh Br • And SN2 H H H H PhS + Br R Br PhS R • We looked at many of the factors that influenced which ..mechanism was operating... • Now we will turn our attention to elimination reactions 2 Elimination reactions NaOH NaOH or low Br H2O OH concentration • You have seen SN1 substitution • Reaction not sped up by altering nucleophile - it is not in RDS • In fact if we increase the amount / concentration of nucleophile we get the following... high O H + + + Br Br OH concentration H H • We observe an elimination reaction • Overall HBr is lost from the molecule • Isn't chemistry fun - these are the same conditions as substitution! • Next two lectures will look at the mechanisms for elimination • And how we control the nature of the reaction we observe... 3 Elimination, bimolecular E2 O H Br HO Br H H • E2 - Elimination bimolecular or 2nd order reaction • 2 molecules in the RDS or transition state H H H H H C H C H H C Br Br H O H C H O H C C H H H H C H C H H H • Two molecules in the rate determining step • So both the base and the substrate control the reaction • Both carbon skeleton & leaving group of substrate important In substitutions nucleophile acts as a nucleophile & attacks carbon In eliminations nucleophile acts as a base & attacks proton 4 Elimination, bimolecular E2: MO • Little confusing as need bonding & anti-bonding in same diagram! • Orbitals need to be parallel for maximum overlap -
Reaction Kinetics in Organic Reactions
Autumn 2004 Reaction Kinetics in Organic Reactions Why are kinetic analyses important? • Consider two classic examples in asymmetric catalysis: geraniol epoxidation 5-10% Ti(O-i-C3H7)4 O DET OH * * OH + TBHP CH2Cl2 3A mol sieve OH COOH5C2 L-(+)-DET = OH COOH5C2 * OH geraniol hydrogenation OH 0.1% Ru(II)-BINAP + H2 CH3OH P(C6H5)2 (S)-BINAP = P(C6 H5)2 • In both cases, high enantioselectivities may be achieved. However, there are fundamental differences between these two reactions which kinetics can inform us about. 1 Autumn 2004 Kinetics of Asymmetric Catalytic Reactions geraniol epoxidation: • enantioselectivity is controlled primarily by the preferred mode of initial binding of the prochiral substrate and, therefore, the relative stability of intermediate species. The transition state resembles the intermediate species. Finn and Sharpless in Asymmetric Synthesis, Morrison, J.D., ed., Academic Press: New York, 1986, v. 5, p. 247. geraniol hydrogenation: • enantioselectivity may be dictated by the relative reactivity rather than the stability of the intermediate species. The transition state may not resemble the intermediate species. for example, hydrogenation of enamides using Rh+(dipamp) studied by Landis and Halpern (JACS, 1987, 109,1746) 2 Autumn 2004 Kinetics of Asymmetric Catalytic Reactions “Asymmetric catalysis is four-dimensional chemistry. Simple stereochemical scrutiny of the substrate or reagent is not enough. The high efficiency that these reactions provide can only be achieved through a combination of both an ideal three-dimensional structure (x,y,z) and suitable kinetics (t).” R. Noyori, Asymmetric Catalysis in Organic Synthesis,Wiley-Interscience: New York, 1994, p.3. “Studying the photograph of a racehorse cannot tell you how fast it can run.” J.