Reactions of Aromatic Compounds Just Like an Alkene, Benzene Has Clouds of Electrons Above and Below Its Sigma Bond Framework
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Common Names for Selected Aromatic Groups
More Nomenclature: Common Names for Selected Aromatic Groups Phenyl group = or Ph = C6H5 = Aryl = Ar = aromatic group. It is a broad term, and includes any aromatic rings. Benzyl = Bn = It has a -CH2- (methylene) group attached to the benzene ring. This group can be used to name particular compounds, such as the one shown below. This compound has chlorine attached to a benzyl group, therefore it is called benzyl chloride. Benzoyl = Bz = . This is different from benzyl group (there is an extra “o” in the name). It has a carbonyl attached to the benzene ring instead of a methylene group. For example, is named benzoyl chloride. Therefore, it is sometimes helpful to recognize a common structure in order to name a compound. Example: Nomenclature: 3-phenylpentane Example: This is Amaize. It is used to enhance the yield of corn production. The systematic name for this compound is 2,4-dinitro-6-(1-methylpropyl)phenol. Polynuclear Aromatic Compounds Aromatic rings can fuse together to form polynuclear aromatic compounds. Example: It is two benzene rings fused together, and it is aromatic. The electrons are delocalized in both rings (think about all of its resonance form). Example: This compound is also aromatic, including the ring in the middle. All carbons are sp2 hybridized and the electron density is shared across all 5 rings. Example: DDT is an insecticide and helped to wipe out malaria in many parts of the world. Consequently, the person who discovered it (Muller) won the Nobel Prize in 1942. The systematic name for this compound is 1,1,1-trichloro-2,2-bis-(4-chlorophenyl)ethane. -
De Novo Biosynthesis of Terminal Alkyne-Labeled Natural Products
De novo biosynthesis of terminal alkyne-labeled natural products Xuejun Zhu1,2, Joyce Liu2,3, Wenjun Zhang1,2,4* 1Department of Chemical and Biomolecular Engineering, 2Energy Biosciences Institute, 3Department of Bioengineering, University of California, Berkeley, CA 94720, USA. 4Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA. *e-mail:[email protected] 1 Abstract: The terminal alkyne is a functionality widely used in organic synthesis, pharmaceutical science, material science, and bioorthogonal chemistry. This functionality is also found in acetylenic natural products, but the underlying biosynthetic pathways for its formation are not well understood. Here we report the characterization of the first carrier protein- dependent terminal alkyne biosynthetic machinery in microbes. We further demonstrate that this enzymatic machinery can be exploited for the in situ generation and incorporation of terminal alkynes into two natural product scaffolds in E. coli. These results highlight the prospect for tagging major classes of natural products, including polyketides and polyketide/non-ribosomal peptide hybrids, using biosynthetic pathway engineering. 2 Natural products are important small molecules widely used as drugs, pesticides, herbicides, and biological probes. Tagging natural products with a unique chemical handle enables the visualization, enrichment, quantification, and mode of action study of natural products through bioorthogonal chemistry1-4. One prevalent bioorthogonal reaction is -
Retention Indices for Frequently Reported Compounds of Plant Essential Oils
Retention Indices for Frequently Reported Compounds of Plant Essential Oils V. I. Babushok,a) P. J. Linstrom, and I. G. Zenkevichb) National Institute of Standards and Technology, Gaithersburg, Maryland 20899, USA (Received 1 August 2011; accepted 27 September 2011; published online 29 November 2011) Gas chromatographic retention indices were evaluated for 505 frequently reported plant essential oil components using a large retention index database. Retention data are presented for three types of commonly used stationary phases: dimethyl silicone (nonpolar), dimethyl sili- cone with 5% phenyl groups (slightly polar), and polyethylene glycol (polar) stationary phases. The evaluations are based on the treatment of multiple measurements with the number of data records ranging from about 5 to 800 per compound. Data analysis was limited to temperature programmed conditions. The data reported include the average and median values of retention index with standard deviations and confidence intervals. VC 2011 by the U.S. Secretary of Commerce on behalf of the United States. All rights reserved. [doi:10.1063/1.3653552] Key words: essential oils; gas chromatography; Kova´ts indices; linear indices; retention indices; identification; flavor; olfaction. CONTENTS 1. Introduction The practical applications of plant essential oils are very 1. Introduction................................ 1 diverse. They are used for the production of food, drugs, per- fumes, aromatherapy, and many other applications.1–4 The 2. Retention Indices ........................... 2 need for identification of essential oil components ranges 3. Retention Data Presentation and Discussion . 2 from product quality control to basic research. The identifi- 4. Summary.................................. 45 cation of unknown compounds remains a complex problem, in spite of great progress made in analytical techniques over 5. -
Phospholipid:Diacylglycerol Acyltransferase: an Enzyme That Catalyzes the Acyl-Coa-Independent Formation of Triacylglycerol in Yeast and Plants
Phospholipid:diacylglycerol acyltransferase: An enzyme that catalyzes the acyl-CoA-independent formation of triacylglycerol in yeast and plants Anders Dahlqvist*†‡, Ulf Ståhl†§, Marit Lenman*, Antoni Banas*, Michael Lee*, Line Sandager¶, Hans Ronne§, and Sten Stymne¶ *Scandinavian Biotechnology Research (ScanBi) AB, Herman Ehles Va¨g 2 S-26831 Svaloˆv, Sweden; ¶Department of Plant Breeding Research, Swedish University of Agricultural Sciences, Herman Ehles va¨g 2–4, S-268 31 Svalo¨v, Sweden; and §Department of Plant Biology, Uppsala Genetic Center, Swedish University of Agricultural Sciences, Box 7080, S-750 07 Uppsala, Sweden Edited by Christopher R. Somerville, Carnegie Institution of Washington, Stanford, CA, and approved March 31, 2000 (received for review February 15, 2000) Triacylglycerol (TAG) is known to be synthesized in a reaction that acid) and epoxidated fatty acid (vernolic acid) in TAG in castor uses acyl-CoA as acyl donor and diacylglycerol (DAG) as acceptor, bean (Ricinus communis) and the hawk’s-beard Crepis palaestina, and which is catalyzed by the enzyme acyl-CoA:diacylglycerol respectively. Furthermore, a similar enzyme is shown to be acyltransferase. We have found that some plants and yeast also present in the yeast Saccharomyces cerevisiae, and the gene have an acyl-CoA-independent mechanism for TAG synthesis, encoding this enzyme, YNR008w, is identified. which uses phospholipids as acyl donors and DAG as acceptor. This reaction is catalyzed by an enzyme that we call phospholipid:dia- Materials and Methods cylglycerol acyltransferase, or PDAT. PDAT was characterized in Yeast Strains and Plasmids. The wild-type yeast strains used were microsomal preparations from three different oil seeds: sunflower, either FY1679 (MAT␣ his3-⌬200 leu2-⌬1 trp1-⌬6 ura3-52) (9) or castor bean, and Crepis palaestina. -
Nomenclature of Carboxylic Acid Derivatives Acid Halide Substituents
Gentilucci, Carboxylic Acid Derivatives Nomenclature of Carboxylic Acid Derivatives Gentilucci, Carboxylic Acid Derivatives Acid halides 1. Alkane + the suffix -oyl followed by the halogen. 2. Select the longest continuous carbon chain, containing the acyl group. 3. Number the carbon chain, beginning at the end nearest to the acyl group. 4. Number the substituents and write the name, listing substituents alphabetically. Acid halide substituents attached to rings are named using the suffix - carbonyl. 1 Gentilucci, Carboxylic Acid Derivatives Anhydrides 1. Symmetrical: replace the ending "acid" with "anhydride ". 2. Asymmetrical: select the longest continuous carbon chain, containing the carboxylic acid group, and derive the parent name by replacing the -e ending with -oic anhydride . 3. Number the carbon chain, beginning at the end nearest to the acyl group. 4. Number the substituents and write the name, listing substituents alphabetically. Gentilucci, Carboxylic Acid Derivatives Amides are named by replacing the ending -oic acid with -amide . 1. Select the longest continuous carbon chain, containing the acyl group, and derive the parent name by replacing the -e ending with -amide . 2. Number the carbon chain, beginning at the end nearest to the acyl group. 3. Number the substituents and write the name, listing substituents alphabetically. 4. If the nitrogen atom is further substituted, the substituents are preceded by N- to indicate that they are attached to the nitrogen. Acid halide substituents attached to rings are named using the suffix - carboxamide. 2 Gentilucci, Carboxylic Acid Derivatives Carboxylate esters 1. Select the longest continuous carbon chain containing the acyl group, and derive the parent name by replacing the -e ending with –oate . -
Carbonyl Compounds
Carbonyl Compounds What are Carbonyl Compounds? Carbonyl compounds are compounds that contain the C=O (carbonyl) group. Preparation of Aldehydes: 1. Preparation from Acid Chloride (Rosenmund Reduction): This reaction was named after Karl Wilhelm Rosenmund, who first reported it in 1918. The reaction is a hydrogenation process in which an acyl chloride is selectively reduced to an aldehyde. The reaction, a hydrogenolysis, is catalysed by palladium on barium sulfate, which is sometimes called the Rosenmund catalyst. 2. Preparation from Nitriles: This reaction involves the preparation of aldehydes (R-CHO) from nitriles (R- CN) using SnCl2 and HCl and quenching the resulting iminium salt ([R- + − CH=NH2] Cl ) with water (H2O). During the synthesis, ammonium chloride is also produced. The reaction is known as Stephen Aldehyde synthesis. Dr. Sumi Ganguly Page 1 3. Preparation from Grignard Reagent: When Grignard Reagent is reacted with HCN followed by hydrolysis aldehyde is produced. Preparation of Ketones: 1. Preparation from Acid Chloride (Friedel-Crafts Acylation): Acid chlorides when reacted with benzene in presence of anhydrous AlCl3, aromatic ketone are produced. However, only aromatic ketones can be prepared by following this method. In order to prepare both aromatic and aliphatic ketones acid chlorides is reacted with lithium dialkylcuprate (Gilman Reagnt). Dr. Sumi Ganguly Page 2 The lithium dialkyl cuprate is produced by the reaction of two equivalents of the organolithium reagent with copper (I) iodide. Example: 3. Preparation from Nitriles and Grignard Reagents: When Grignard Reagent is reacted with RCN followed by hydrolysis aldehyde is produced. Dr. Sumi Ganguly Page 3 Physical Characteristic of Carbonyl Compounds: 1) The boiling point of carbonyl compounds is higher than the alkanes with similar Mr. -
Fischer Carbene Complexes in Organic Synthesis Ke Chen 1/31/2007
Baran Group Meeting Fischer Carbene Complexes in Organic Synthesis Ke Chen 1/31/2007 Ernst Otto Fischer (1918 - ) Other Types of Stabilized Carbenes: German inorganic chemist. Born in Munich Schrock carbene, named after Richard R. Schrock, is nucleophilic on November 10, 1918. Studied at Munich at the carbene carbon atom in an unpaired triplet state. Technical University and spent his career there. Became director of the inorganic Comparision of Fisher Carbene and Schrock carbene: chemistry institute in 1964. In the 1960s, discovered a metal alkylidene and alkylidyne complexes, referred to as Fischer carbenes and Fischer carbynes. Shared the Nobel Prize in Chemistry with Geoffery Wilkinson in 1973, for the pioneering work on the chemistry of organometallic compounds. Schrock carbenes are found with: Representatives: high oxidation states Isolation of first transition-metal carbene complex: CH early transition metals Ti(IV), Ta(V) 2 non pi-acceptor ligands Cp2Ta CH N Me LiMe Me 2 2 non pi-donor substituents CH3 (CO) W CO (CO)5W 5 (CO)5W A.B. Charette J. Am. Chem. Soc. 2001, 123, 11829. OMe O E. O. Fischer, A. Maasbol, Angew. Chem. Int. Ed., 1964, 3, 580. Persistent carbenes, isolated as a crystalline solid by Anthony J. Arduengo in 1991, can exist in the singlet state or the triplet state. Representative Fischer Carbenes: W(CO) Cr(CO) 5 5 Fe(CO)4 Mn(CO)2(MeCp) Co(CO)3SnPh3 Me OMe Ph Ph Ph NEt2 Ph OTiCp2Cl Me OMe Foiled carbenes were defined as "systems where stabilization is Fischer carbenes are found with : obtained by the inception of the facile reaction which is foiled by the impossibility of attaining the final product geometry". -
Indium Promoted-Convenient Method for Acylation of Alc이iols with Acyl Chlorides
Communications to the Editor Bull. Korean Chem. Soc. 2003, Vol. 24, No. 2 155 Indium Promoted-Convenient Method for Acylation of Alc이iols with Acyl Chlorides Dae Hyan Cho, Joong Gon Kim,f and Doo Ok Jang* Department of Chemistry, Yonsei University, Wonju 220-710, Korea ‘Biotechnology Division, Hanwha Chemical R & D Center, Daejeon 305-345, Korea Received November 9, 2002 Key Words : Indium, Alcohol, Acylation, Acyl chloride Even though various reagents for coupling of alcohols tions for the acylation of alcohols with acyl chlorides in the with carboxylic acids and transesterification of esters have presence of indium. The results are summarized in Table 1. been developed,1 there is still a great demand for a process Reaction of 2 (1 equiv) with 1 (1 equiv) in the presence of by using acyl chlorides for the acylation of alcohols in the indium (1 equiv) in CH3CN at room temperature produced case of substrates having steric hindrance or low reactivity. the corresponding ester in only 21% yield and the starting The acylation of alcohols with acyl chlorides is commonly acyl chloride and alcohol were recovered. The optimal yield carried out in the presence of tertiary amines such as 4- of the ester was attained with 3 equiv of 1 or 2 in the presence (methylamino) pyridine or 4 -pyrrolidinopyridine.2 Many of 3 equiv of indium. The solvent effect of acylation of 2 methods for the acylation of alcohols with acyl chlorides with 1 in the presence of indium was studied. The reaction have been developed using a variety of reagents.3 Most proceeded efficiently in common organic solvents such as recently, benzoylation of alcohols with lithium perchlorate DMF, Et2。,THF or CHzCh whereas non-polar solvents hase been reported.4 However, these methods have their own such as n-hexane or benzene gave poor yields of the ester. -
Mdi), 1,6 Hexamethylene Diisocyanate (Hdi
4.03.11. PRODUCTION OF ISOCYANATES FOR POLYURETHANE PRO- DUCTION CHEMICALS AND ALLIED APPLICATION NOTE 4.03.11 PRODUCTION OF ISOCYANATES FOR POLYURETHANE PRODUCTION METHYLENE DIPHENYL DIISOCYANATE (MDI), 1,6 HEXAMETHYLENE DIISOCYANATE (HDI) Typical end products Polyurethane foam for different applications, for example, bedding, of materials can be produced to meet the needs for furniture, packaging, coatings and elastomers. specific applications. Chemical curve: R.I. for MDI at Ref. Temp. of 25˚C Application The most commonly used isocyanates for the production of PU are methylene diphenyl diisocyanate (MDI) and toluene diisocyanate (TDI). If color and transparency are important, an aliphatic diisocyanate such as hexamethylene diisocyanate (HDI) is used. The first step in the production of polyurethane is the synthesis of the raw materials. The diisocyanate is typically produced from basic raw materials via nitration, hydrogenation and phosgenation. The feedstock and initial processing steps depend on the Introduction desired isocyanate, but all go through a phosgenation step. Polyurethanes (PUs) are a class of versatile materials with great potential for use in different applications. For instance, for the production of MDI, benzene and They are used in the manufacture of many different nitric acid are reacted to produce nitrobenzene. After items, such as paints, liquid coatings, elastomers, a hydrogeneration step, the nitrobenzene is converted insulators, elastics, foams and integral skins. to aniline. It is then condensed with formaldehyde to produce methylene diphenyl diamine (MDA), the Polyurethanes are produced by polymerization of precursor for MDI. The MDA is fed to a phosgenation a diisocyanate with a polyol. Because a variety of reactor where it reacts with phosgene to produce the diisocyanates and a wide range of polyols can be end-product MDI. -
Chemical Kinetics HW1 (Kahn, 2010)
Chemical Kinetics HW1 (Kahn, 2010) Question 1. (6 pts) A reaction with stoichiometry A = P + 2Q was studied by monitoring the concentration of the reactant A as a function of time for eighteen minutes. The concentration determination method had a maximum error of 6 M. The following concentration profile was observed: Time (min) Conc (mM) 1 0.9850 2 0.8571 3 0.7482 4 0.6549 5 0.5885 6 0.5183 7 0.4667 8 0.4281 9 0.3864 10 0.3557 11 0.3259 12 0.3037 13 0.2706 14 0.2486 15 0.2355 16 0.2188 17 0.2111 18 0.1930 Determine the reaction order and calculate the rate constant for decomposition of A. What can be said about the mechanism or molecularity of this reaction? Question 2. (4 pts) Solve problem 2 on pg 31 in your textbook (House) using both linear and non-linear regression. Provide standard errors for the rate constant and half-life based on linear and non-linear fits. Below is the data set for your convenience: dataA = {{0, 0.5}, {10, 0.443}, {20,0.395}, {30,0.348}, {40,0.310}, {50,0.274}, {60,0.24}, {70,0.212}, {80,0.190}, {90,0.171}, {100,0.164}} Question 3. (3 pts) Solve problem 3 on pg 32 in your textbook (House). Question 4. (7 pts) The authors of the paper “Microsecond Folding of the Cold Shock Protein Measured by a Pressure-Jump Technique” suggest that the activated state of folding of CspB follows Hammond- type behavior. -
RIFM Fragrance Ingredient Safety Assessment, 2-Isopropyl-4- Methylanisole, CAS Registry Number 31574-44-4
Food and Chemical Toxicology 110 (2017) S545eS551 Contents lists available at ScienceDirect Food and Chemical Toxicology journal homepage: www.elsevier.com/locate/foodchemtox Short review RIFM fragrance ingredient safety assessment, 2-isopropyl-4- methylanisole, CAS Registry Number 31574-44-4 * A.M. Api a, , D. Belsito b, D. Botelho a, D. Browne a, M. Bruze c, G.A. Burton Jr. d, J. Buschmann e, M.L. Dagli f, M. Date a, W. Dekant g, C. Deodhar a, M. Francis a, A.D. Fryer h, K. Joshi a,S.LaCavaa, A. Lapczynski a, D.C. Liebler i,D.O’Brien a, R. Parakhia a,A.Patela, T.M. Penning j, G. Ritacco a, J. Romine a, D. Salvito a, T.W. Schultz k, I.G. Sipes l, Y. Thakkar a, E.H. Theophilus a, A.K. Tiethof a, Y. Tokura m, S. Tsang a, J. Wahler a a Research Institute for Fragrance Materials, Inc., 50 Tice Boulevard, Woodcliff Lake, NJ 07677, USA b Columbia University Medical Center, Department of Dermatology, 161 Fort Washington Ave., New York, NY 10032, USA c Malmo University Hospital, Department of Occupational & Environmental Dermatology, Sodra Forstadsgatan 101, Entrance 47, Malmo SE-20502, Sweden d School of Natural Resources & Environment, University of Michigan, Dana Building G110, 440 Church St., Ann Arbor, MI 58109, USA e Fraunhofer Institute for Toxicology and Experimental Medicine, Nikolai-Fuchs-Strasse 1, 30625 Hannover, Germany f University of Sao Paulo, School of Veterinary Medicine and Animal Science, Department of Pathology, Av. Prof. dr. Orlando Marques de Paiva, 87, Sao Paulo CEP 05508-900, Brazil g University of Wuerzburg, Department of Toxicology, Versbacher Str. -
Reactions of Benzene & Its Derivatives
Organic Lecture Series ReactionsReactions ofof BenzeneBenzene && ItsIts DerivativesDerivatives Chapter 22 1 Organic Lecture Series Reactions of Benzene The most characteristic reaction of aromatic compounds is substitution at a ring carbon: Halogenation: FeCl3 H + Cl2 Cl + HCl Chlorobenzene Nitration: H2 SO4 HNO+ HNO3 2 + H2 O Nitrobenzene 2 Organic Lecture Series Reactions of Benzene Sulfonation: H 2 SO4 HSO+ SO3 3 H Benzenesulfonic acid Alkylation: AlX3 H + RX R + HX An alkylbenzene Acylation: O O AlX H + RCX 3 CR + HX An acylbenzene 3 Organic Lecture Series Carbon-Carbon Bond Formations: R RCl AlCl3 Arenes Alkylbenzenes 4 Organic Lecture Series Electrophilic Aromatic Substitution • Electrophilic aromatic substitution: a reaction in which a hydrogen atom of an aromatic ring is replaced by an electrophile H E + + + E + H • In this section: – several common types of electrophiles – how each is generated – the mechanism by which each replaces hydrogen 5 Organic Lecture Series EAS: General Mechanism • A general mechanism slow, rate + determining H Step 1: H + E+ E El e ctro - Resonance-stabilized phile cation intermediate + H fast Step 2: E + H+ E • Key question: What is the electrophile and how is it generated? 6 Organic Lecture Series + + 7 Organic Lecture Series Chlorination Step 1: formation of a chloronium ion Cl Cl + + - - Cl Cl+ Fe Cl Cl Cl Fe Cl Cl Fe Cl4 Cl Cl Chlorine Ferric chloride A molecular complex An ion pair (a Lewis (a Lewis with a positive charge containing a base) acid) on ch lorine ch loronium ion Step 2: attack of