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Development and Evaluation of Rrna Targeted in Situ Probes and Phylogenetic Relationships of Freshwater Fungi
Development and evaluation of rRNA targeted in situ probes and phylogenetic relationships of freshwater fungi vorgelegt von Diplom-Biologin Christiane Baschien aus Berlin Von der Fakultät III - Prozesswissenschaften der Technischen Universität Berlin zur Erlangung des akademischen Grades Doktorin der Naturwissenschaften - Dr. rer. nat. - genehmigte Dissertation Promotionsausschuss: Vorsitzender: Prof. Dr. sc. techn. Lutz-Günter Fleischer Berichter: Prof. Dr. rer. nat. Ulrich Szewzyk Berichter: Prof. Dr. rer. nat. Felix Bärlocher Berichter: Dr. habil. Werner Manz Tag der wissenschaftlichen Aussprache: 19.05.2003 Berlin 2003 D83 Table of contents INTRODUCTION ..................................................................................................................................... 1 MATERIAL AND METHODS .................................................................................................................. 8 1. Used organisms ............................................................................................................................. 8 2. Media, culture conditions, maintenance of cultures and harvest procedure.................................. 9 2.1. Culture media........................................................................................................................... 9 2.2. Culture conditions .................................................................................................................. 10 2.3. Maintenance of cultures.........................................................................................................10 -
Preliminary Classification of Leotiomycetes
Mycosphere 10(1): 310–489 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/7 Preliminary classification of Leotiomycetes Ekanayaka AH1,2, Hyde KD1,2, Gentekaki E2,3, McKenzie EHC4, Zhao Q1,*, Bulgakov TS5, Camporesi E6,7 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4Landcare Research Manaaki Whenua, Private Bag 92170, Auckland, New Zealand 5Russian Research Institute of Floriculture and Subtropical Crops, 2/28 Yana Fabritsiusa Street, Sochi 354002, Krasnodar region, Russia 6A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy. 7A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314 Brescia, Italy. Ekanayaka AH, Hyde KD, Gentekaki E, McKenzie EHC, Zhao Q, Bulgakov TS, Camporesi E 2019 – Preliminary classification of Leotiomycetes. Mycosphere 10(1), 310–489, Doi 10.5943/mycosphere/10/1/7 Abstract Leotiomycetes is regarded as the inoperculate class of discomycetes within the phylum Ascomycota. Taxa are mainly characterized by asci with a simple pore blueing in Melzer’s reagent, although some taxa have lost this character. The monophyly of this class has been verified in several recent molecular studies. However, circumscription of the orders, families and generic level delimitation are still unsettled. This paper provides a modified backbone tree for the class Leotiomycetes based on phylogenetic analysis of combined ITS, LSU, SSU, TEF, and RPB2 loci. In the phylogenetic analysis, Leotiomycetes separates into 19 clades, which can be recognized as orders and order-level clades. -
Mantar Dergisi
11 6845 - Volume: 20 Issue:1 JOURNAL - E ISSN:2147 - April 20 e TURKEY - KONYA - FUNGUS Research Center JOURNAL OF OF JOURNAL Selçuk Selçuk University Mushroom Application and Selçuk Üniversitesi Mantarcılık Uygulama ve Araştırma Merkezi KONYA-TÜRKİYE MANTAR DERGİSİ E-DERGİ/ e-ISSN:2147-6845 Nisan 2020 Cilt:11 Sayı:1 e-ISSN 2147-6845 Nisan 2020 / Cilt:11/ Sayı:1 April 2020 / Volume:11 / Issue:1 SELÇUK ÜNİVERSİTESİ MANTARCILIK UYGULAMA VE ARAŞTIRMA MERKEZİ MÜDÜRLÜĞÜ ADINA SAHİBİ PROF.DR. GIYASETTİN KAŞIK YAZI İŞLERİ MÜDÜRÜ DR. ÖĞR. ÜYESİ SİNAN ALKAN Haberleşme/Correspondence S.Ü. Mantarcılık Uygulama ve Araştırma Merkezi Müdürlüğü Alaaddin Keykubat Yerleşkesi, Fen Fakültesi B Blok, Zemin Kat-42079/Selçuklu-KONYA Tel:(+90)0 332 2233998/ Fax: (+90)0 332 241 24 99 Web: http://mantarcilik.selcuk.edu.tr http://dergipark.gov.tr/mantar E-Posta:[email protected] Yayın Tarihi/Publication Date 27/04/2020 i e-ISSN 2147-6845 Nisan 2020 / Cilt:11/ Sayı:1 / / April 2020 Volume:11 Issue:1 EDİTÖRLER KURULU / EDITORIAL BOARD Prof.Dr. Abdullah KAYA (Karamanoğlu Mehmetbey Üniv.-Karaman) Prof.Dr. Abdulnasır YILDIZ (Dicle Üniv.-Diyarbakır) Prof.Dr. Abdurrahman Usame TAMER (Celal Bayar Üniv.-Manisa) Prof.Dr. Ahmet ASAN (Trakya Üniv.-Edirne) Prof.Dr. Ali ARSLAN (Yüzüncü Yıl Üniv.-Van) Prof.Dr. Aysun PEKŞEN (19 Mayıs Üniv.-Samsun) Prof.Dr. A.Dilek AZAZ (Balıkesir Üniv.-Balıkesir) Prof.Dr. Ayşen ÖZDEMİR TÜRK (Anadolu Üniv.- Eskişehir) Prof.Dr. Beyza ENER (Uludağ Üniv.Bursa) Prof.Dr. Cvetomir M. DENCHEV (Bulgarian Academy of Sciences, Bulgaristan) Prof.Dr. Celaleddin ÖZTÜRK (Selçuk Üniv.-Konya) Prof.Dr. Ertuğrul SESLİ (Trabzon Üniv.-Trabzon) Prof.Dr. -
Mollisia Gibbospora Fungal Planet Description Sheets 419
418 Persoonia – Volume 44, 2020 Mollisia gibbospora Fungal Planet description sheets 419 Fungal Planet 1093 – 29 June 2020 Mollisia gibbospora I. Kušan, Matočec, Pošta, Tkalčec & Mešić, sp. nov. Etymology. Named after the protuberances on living, mature ascospores. brown, *2.4–3.3 µm wide, walls *0.4–0.6 µm thick. Asterisk (*) denotes living material. Ascus amyloidity is termed after Baral Classification — Mollisiaceae, Helotiales, Leotiomycetes. (1987) and spore shape after Kušan et al. (2014). Ascomata apothecial, shallowly cupulate to plate-shaped when Distribution & Habitat — Sporogenous phases of the species young, becoming sub-pulvinate to pulvinate when fully mature, are known so far from the type locality on Mt Velebit, Croatia, superficial, sessile, ± circular from the top view, *0.4–1(–1.4) and (?)New Zealand (unpubl. data). Croatian collection is found mm diam, solitary or gregarious (up to few apothecia). Hyme on a decorticated fallen branch of Fagus sylvatica (originally a nium whitish grey to pale lead-grey, not wrinkled but notably part of the trunk), lying in a moist litter at the edge of a natural finely pruinose; margin slightly irregular, ± sharp, whitish, not karstic pond in a subalpine type of forest while New Zealand concolourous with the hymenium, smooth, entire, finely wavy; collection originates from decorticated wood. excipular surface brownish from base to the upper flank, smooth. Typus. CROATIA, Lika-Senj County, Paklenica National Park, southern part Basal hyphae macroscopically indistinguishable. Asexual morph of the Mt Velebit, Javornik area, 1 170 m SW from Badanj peak (1 638 m), not seen. Hymenium *80–95 µm thick. Asci cylindrical with 1 360 m asl, N44°23'03" E15°27'22"; on fallen decorticated large branch of conical-subtruncate apex, *67–89 × (5.8–)6.2–7.2 µm, pars Fagus sylvatica (Fagaceae) in a virgin subalpine forest of F. -
Fungicide Application and Residues in Control of Blumeriella Jaapii (Rehm) Arx in Sweet Cherry
Emirates Journal of Food and Agriculture. 2021. 33(3): 253-259 doi: 10.9755/ejfa.2021.v33.i3.2659 http://www.ejfa.me/ RESEARCH ARTICLE Fungicide application and residues in control of Blumeriella jaapii (Rehm) Arx in sweet cherry Vladimir Božić1, Slavica Vuković2, Mila Grahovac2, Sanja Lazić2, Goran Aleksić3, Dragana Šunjka2 1CI “Plant protection”, Toplicki partizanski odred 151, Niš, Serbia, 2University of Novi Sad, Faculty of Agriculture, Trg Dositeja Obradovica 8, Novi Sad, Serbia, 3Institute of Plant Protection and Environment, Teodora Drajzera 9, Belgrade, Serbia ABSTRACT Fungicides are significant disease control tool in increasing agricultural production, however, their intensive application has led to environmental problems including health hazards. To minimize harmful effects of the fungicide application in sweet cherry orchards, it is necessary to use them in accordance with the good agricultural practice and to monitor presence of their residues. Cherry leaf spot caused by Blumeriella jaapii is a significant sweet cherry disease which control is heavily dependent on fungicide treatments. In this study, effects of fungicide treatments against B. jaapii and fungicide residues remaining in sweet cherry fruits after the treatments were evaluated, and the causal agent of cherry leaf spot was confirmed on cherry leaves from untreated control plots using conventional phytopathological techniques (isolation on nutrient media and morphological traits of developed fungal colonies). The trial was set up at two localities in south Serbia (District of Niš), in sweet cherry orchards, according to EPPO methods. Fungicides tested against B. jaapii were based on dodine (650 g a.i./kg) WP formulation, at concentration of 0.1% and mancozeb (800 g a.i./kg) WP formulation, at concentration of 0.25%. -
Diversity of Macromycetes in the Botanical Garden “Jevremovac” in Belgrade
40 (2): (2016) 249-259 Original Scientific Paper Diversity of macromycetes in the Botanical Garden “Jevremovac” in Belgrade Jelena Vukojević✳, Ibrahim Hadžić, Aleksandar Knežević, Mirjana Stajić, Ivan Milovanović and Jasmina Ćilerdžić Faculty of Biology, University of Belgrade, Takovska 43, 11000 Belgrade, Serbia ABSTRACT: At locations in the outdoor area and in the greenhouse of the Botanical Garden “Jevremovac”, a total of 124 macromycetes species were noted, among which 22 species were recorded for the first time in Serbia. Most of the species belong to the phylum Basidiomycota (113) and only 11 to the phylum Ascomycota. Saprobes are dominant with 81.5%, 45.2% being lignicolous and 36.3% are terricolous. Parasitic species are represented with 13.7% and mycorrhizal species with 4.8%. Inedible species are dominant (70 species), 34 species are edible, five are conditionally edible, eight are poisonous and one is hallucinogenic (Psilocybe cubensis). A significant number of representatives belong to the category of medicinal species. These species have been used for thousands of years in traditional medicine of Far Eastern nations. Current studies confirm and explain knowledge gained by experience and reveal new species which produce biologically active compounds with anti-microbial, antioxidative, genoprotective and anticancer properties. Among species collected in the Botanical Garden “Jevremovac”, those medically significant are: Armillaria mellea, Auricularia auricula.-judae, Laetiporus sulphureus, Pleurotus ostreatus, Schizophyllum commune, Trametes versicolor, Ganoderma applanatum, Flammulina velutipes and Inonotus hispidus. Some of the found species, such as T. versicolor and P. ostreatus, also have the ability to degrade highly toxic phenolic compounds and can be used in ecologically and economically justifiable soil remediation. -
Diplocarpon Rosae) Genetic Diversity in Eastern North America Using Amplified Fragment Length Polymorphism and Implications for Resistance Screening
J. AMER.SOC.HORT.SCI. 132(4):534–540. 2007. Distribution of Rose Black Spot (Diplocarpon rosae) Genetic Diversity in Eastern North America Using Amplified Fragment Length Polymorphism and Implications for Resistance Screening Vance M. Whitaker and Stan C. Hokanson1 Department of Horticultural Science, University of Minnesota, 258 Alderman Hall, 1970 Folwell Avenue, St. Paul, MN 55108 James Bradeen Department of Plant Pathology, University of Minnesota, 495 Borlaug Hall, 1991 Upper Buford Circle, St. Paul, MN 55108 ADDITIONAL INDEX WORDS. AMOVA, dendrogram, fungal isolate, Jaccard’s coefficient, pathogenic race, principal component analysis ABSTRACT. Black spot, incited by the fungus Diplocarpon rosae Wolf, is the most significant disease problem of landscape roses (Rosa hybrida L.) worldwide. The documented presence of pathogenic races necessitates that rose breeders screen germplasm with isolates that represent the range of D. rosae diversity for their target region. The objectives of this study were to characterize the genetic diversity of single-spore isolates from eastern North America and to examine their distribution according to geographic origin, host of origin, and race. Fifty isolates of D. rosae were collected from roses representing multiple horticultural classes in disparate locations across eastern North America and analyzed by amplified fragment length polymorphism. Considerable marker diversity among isolates was discovered, although phenetic and cladistic analyses revealed no significant clustering according to host of origin or race. Some clustering within collection locations suggested short-distance dispersal through asexual conidia. Lack of clustering resulting from geographic origin was consistent with movement of D. rosae on vegetatively propagated roses. Results suggest that field screening for black spot resistance in multiple locations may not be necessary; however, controlled inoculations with single-spore isolates representing known races is desirable as a result of the inherent limitations of field screening. -
Catalogue of Fungus Fair
Oakland Museum, 6-7 December 2003 Mycological Society of San Francisco Catalogue of Fungus Fair Introduction ......................................................................................................................2 History ..............................................................................................................................3 Statistics ...........................................................................................................................4 Total collections (excluding "sp.") Numbers of species by multiplicity of collections (excluding "sp.") Numbers of taxa by genus (excluding "sp.") Common names ................................................................................................................6 New names or names not recently recorded .................................................................7 Numbers of field labels from tables Species found - listed by name .......................................................................................8 Species found - listed by multiplicity on forays ..........................................................13 Forays ranked by numbers of species .........................................................................16 Larger forays ranked by proportion of unique species ...............................................17 Species found - by county and by foray ......................................................................18 Field and Display Label examples ................................................................................27 -
Morchella Exuberans – Ny Murkla För Sverige
Svensk Mykologisk Tidskrift Volym 36 · nummer 3 · 2015 Svensk Mykologisk Tidskrift 1J@C%RV`:` 1R1$:`7 www.svampar.se 0VJ@7@QCQ$1@/ Sveriges Mykologiska Förening /VJ]%GC1HV`:`Q`1$1J:C:` 1@C:`IVR0:I]R Föreningen verkar för :J@J7 J1J$QH.IVR0VJ@ QH.JQ`RV%`Q]V1@ R VJ G?`V @?JJVRQI QI 0V`1$V 0:I]:` QH. 1J `VV8/VJ% @QIIV`IVR`7`:J%IIV` 0:I]:``QCC1J: %`VJ ]V`B`QH.?$:00V`1$V7@QCQ$1@:DV`VJ1J$8 R@7RR:0J: %`VJQH.:0:I]]CQH@J1J$QH.- 9 `%@ 1QJV` 1CC`V``: :`V`1JJ]BD7.VI1R: J: %]] `?R:JRV1@Q$QH.I:`@@V`%JRV`1:@ - 11180:I]:`8V8/VJV`.BCC$VJQI- :$:JRV:0$?CC:JRVC:$:` CVI@:] 1 D8/VJ ``:I ?CC IVR G1R`:$ R : @QJ :@ V` IVCC:J CQ@:C: 0:I]`V`VJ1J$:` QH. ``BJ/Q`V<: .Q` I1JJV`QJR8 0:I]1J `VV`:RV1C:JRV %JRV`C?: R:@QJ :@ %]]`?.BCCIVRI7@QCQ$1@:`V`- $:`1$`:JJC?JRV` R VJ :I0V`@:J IVR I7@QCQ$1@ `Q`@J1J$ QH. Redaktion 0V VJ@:]8 JVR:@ V`QH.:J0:`1$% $10:`V 1@:VCKQJ VRCVI@:]V`.BCCV$VJQI1J?J1J$:0IVRCVIR LH=: :J :0 VJ]B`V`VJ1J$VJG:J@$1`Q /JNLLHO//;< 5388-7733 =0:I]:`8V VRCVI:0 VJ` 7 [ 7`V`IVRCVII:`GQ::10V`1$V H=AQJVGQ`$ [ 7`V`IVRCVII:`GQ::% :J`V`0V`1$V G:`J: :`0V [ 7 `V` %RV`:JRVIVRCVII:`GQ::1 6: .:II:`01@ 0V`1$^6 _ VC8 [ 7 `V``=^=/_ =8H`QJVGQ`QI %GH`1]``QI:G`Q:R:`V1VCHQIV82:7IVJ Jan Nilsson `Q` ^46 _H:JGVI:RVG7H`VR1 H:`RG7 IVGV`$ 01Q%`1VG.Q]: 11180:I]:`8VQ` QQ%` :LL;J4< G:J@:HHQ%J7 =$8V 9:;<74 :9AL9D/74E4 Äldre nummer :00VJ@7@QCQ$1@/^ KNJE/KOJ<;<_`1JJ]BVJAEQI@:JGV ?CC: Sveriges Mykologiska Förening ``BJD8 9=V VJ@:] Previous issues Q` 0VJ@ 7@QCQ$1@ / ^KNJE/KOJ<;<_:`V:0:1C:GCVQJ:AE1 GVGQ`$%J10V`1 V H:JGVQ`RV`VR``QID8 :6 GVGQ`$ 11180:I]:`8V Omslagsbild 2:]V$=:6^C1Q].Q`%]1:H1J%_DQ H_ 8 I detta nummer nr 3 2015 *_77`J`7 SMF 2 Kompakt taggsvamp (Hydnellum compac- B`0]%]IG$ tum_ŽJB$`: :J@:`QIRVV@. -
A Taxonomic and Phylogenetic Investigation of Conifer Endophytes
A Taxonomic and Phylogenetic Investigation of Conifer Endophytes of Eastern Canada by Joey B. Tanney A thesis submitted to the Faculty of Graduate and Postdoctoral Affairs in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biology Carleton University Ottawa, Ontario © 2016 Abstract Research interest in endophytic fungi has increased substantially, yet is the current research paradigm capable of addressing fundamental taxonomic questions? More than half of the ca. 30,000 endophyte sequences accessioned into GenBank are unidentified to the family rank and this disparity grows every year. The problems with identifying endophytes are a lack of taxonomically informative morphological characters in vitro and a paucity of relevant DNA reference sequences. A study involving ca. 2,600 Picea endophyte cultures from the Acadian Forest Region in Eastern Canada sought to address these taxonomic issues with a combined approach involving molecular methods, classical taxonomy, and field work. It was hypothesized that foliar endophytes have complex life histories involving saprotrophic reproductive stages associated with the host foliage, alternative host substrates, or alternate hosts. Based on inferences from phylogenetic data, new field collections or herbarium specimens were sought to connect unidentifiable endophytes with identifiable material. Approximately 40 endophytes were connected with identifiable material, which resulted in the description of four novel genera and 21 novel species and substantial progress in endophyte taxonomy. Endophytes were connected with saprotrophs and exhibited reproductive stages on non-foliar tissues or different hosts. These results provide support for the foraging ascomycete hypothesis, postulating that for some fungi endophytism is a secondary life history strategy that facilitates persistence and dispersal in the absence of a primary host. -
Dermea Piceina (Dermateaceae): an Unrecorded Endophytic Fungus of Isolated from Abies Koreana
The Korean Journal of Mycology www.kjmycology.or.kr RESEARCH NOTE Dermea piceina (Dermateaceae): An Unrecorded Endophytic Fungus of Isolated from Abies koreana 1,* 1 2 Ju-Kyeong Eo , Eunsu Park , and Han-Na Choe 1 Division of Climate and Ecology, Bureau of Conservation & Assessment Research, National Institute of Ecology, Seocheon 33657, Korea 2 Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology, Jeongeup 56212, Korea * Corresponding author: [email protected] ABSTRACT We found an unrecorded endophytic fungus, Dermea piceina J.W. Groves, isolated from alpine conifer Abies koreana. Until now only one Dermea species, D. cerasi, has been reported in Korea. In this study, we compared morphological characteristics and DNA sequences, including internal transcribed spacer and 28S ribosomal DNA, of D. piceina isolated from A. koreana with those of related species. Here, we present morphological and molecular characters of this fungus for the first time in Korea. Key word: Abies koreana, Dermea piceina, Endophytic fungi, Korea The genus Dermea Fr. contains 24 species worldwide [1]. Until now only one species, D. cerasi, had been discovered in Korea on fallen branches in the national park of Byeonsanbando [2]. Since then, there was no additional record of Dermea species therein. The apothecium of Dermea is very hard, leathery, dark brown OPEN ACCESS pISSN : 0253-651X to black in color and has a clavate ascus with eight ascospores. In the asexual stage, the macroconidium is eISSN : 2383-5249 sickle-shaped or filiform with 0-3 septa, and the microconidium is rod or filiform without septa [3]. Kor. J. Mycol. 2020 December, 48(4): 485-489 Alpine conifers are vulnerable to climate change [4]. -
Filo Order Family Species Trophic Group Host Species UEVH- FUNGI Novelties Post-Fire Spp. Occurrence
Biodiversity Data Journal Macrofungi of Mata da Margaraça (Portugal), A Relic from the Tertiary Age Bruno Natário1, Rogério Louro1, Celeste Santos-Silva1 1Biology Department, Macromycology Laboratory, Instituto de Ciências Agrárias e Ambientais Mediterrânicas, University of Évora, 7002-554 ÉVORA, Portugal Table 1. Ascomycota and Basidiomycota macrofungi recorded in Mata da Margaraça. Species are arranged alphabetically according to higher taxonomic placement (Filo, Order and Family). Trophic group; P: parasitic; S: saprophytic; M: mycorrhizal. Host species (putative host); C: Castanea sativa ; E: Eucalypthus spp.; H: Stereum spp.; I: Ilex aquifolium P: Pinus pinaster ; Q: Quercus robur ; T: Thaumetophoea pityocampa ; Z: Peniophora spp. UEVH_FUNGI; Herbarium accession number or p.c.: private collection . Novelties; N: novelties to Portugal; n: novelties to Beira Litoral. Occurrence; 1: recorded only in one of the two studies; 2: recorded in the two studies. Filo Order Family Species Trophic group Host species UEVH- FUNGI Novelties Post-fire spp. Occurrence Ascomycota Incertae sedis Incerta sedis Thyronectria aquifolii (Fr.) Jaklitsch & Voglmayr P I 2004687 N 1 Geoglossales Geoglossaceae Geoglossum umbratile Sacc. S p.c. N 1 Helotiales Leotiaceae Leotia lubrica (Scop.) Pers. S p.c. n 1 Helotiaceae Bisporella citrina (Batsch) Korf & S.E. Carp. S 2004460 N 2 Rutstroemiaceae Lanzia echinophila (Bull.) Korf S p.c. n 1 Rutstroemia firma (Pers.) P. Karst. S 2004527 n 2 Sclerotiniaceae Moellerodiscus lentus (Berk. & Broome) Dumont S 2004148 N 1 Hypocreales Cordycipitaceae Cordyceps militaris (L.) Fr. P T 2004214 n 1 Leotiales Bulgariaceae Bulgaria inquinans (Pers.) Fr. S 2004450 N 1 Pezizales Ascobolaceae Ascobolus carbonarius P. Karst. S 2004096 N X 1 Helvellaceae Helvella elastica Bull.