Mollisia Gibbospora Fungal Planet Description Sheets 419
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Development and Evaluation of Rrna Targeted in Situ Probes and Phylogenetic Relationships of Freshwater Fungi
Development and evaluation of rRNA targeted in situ probes and phylogenetic relationships of freshwater fungi vorgelegt von Diplom-Biologin Christiane Baschien aus Berlin Von der Fakultät III - Prozesswissenschaften der Technischen Universität Berlin zur Erlangung des akademischen Grades Doktorin der Naturwissenschaften - Dr. rer. nat. - genehmigte Dissertation Promotionsausschuss: Vorsitzender: Prof. Dr. sc. techn. Lutz-Günter Fleischer Berichter: Prof. Dr. rer. nat. Ulrich Szewzyk Berichter: Prof. Dr. rer. nat. Felix Bärlocher Berichter: Dr. habil. Werner Manz Tag der wissenschaftlichen Aussprache: 19.05.2003 Berlin 2003 D83 Table of contents INTRODUCTION ..................................................................................................................................... 1 MATERIAL AND METHODS .................................................................................................................. 8 1. Used organisms ............................................................................................................................. 8 2. Media, culture conditions, maintenance of cultures and harvest procedure.................................. 9 2.1. Culture media........................................................................................................................... 9 2.2. Culture conditions .................................................................................................................. 10 2.3. Maintenance of cultures.........................................................................................................10 -
Preliminary Classification of Leotiomycetes
Mycosphere 10(1): 310–489 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/7 Preliminary classification of Leotiomycetes Ekanayaka AH1,2, Hyde KD1,2, Gentekaki E2,3, McKenzie EHC4, Zhao Q1,*, Bulgakov TS5, Camporesi E6,7 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4Landcare Research Manaaki Whenua, Private Bag 92170, Auckland, New Zealand 5Russian Research Institute of Floriculture and Subtropical Crops, 2/28 Yana Fabritsiusa Street, Sochi 354002, Krasnodar region, Russia 6A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy. 7A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314 Brescia, Italy. Ekanayaka AH, Hyde KD, Gentekaki E, McKenzie EHC, Zhao Q, Bulgakov TS, Camporesi E 2019 – Preliminary classification of Leotiomycetes. Mycosphere 10(1), 310–489, Doi 10.5943/mycosphere/10/1/7 Abstract Leotiomycetes is regarded as the inoperculate class of discomycetes within the phylum Ascomycota. Taxa are mainly characterized by asci with a simple pore blueing in Melzer’s reagent, although some taxa have lost this character. The monophyly of this class has been verified in several recent molecular studies. However, circumscription of the orders, families and generic level delimitation are still unsettled. This paper provides a modified backbone tree for the class Leotiomycetes based on phylogenetic analysis of combined ITS, LSU, SSU, TEF, and RPB2 loci. In the phylogenetic analysis, Leotiomycetes separates into 19 clades, which can be recognized as orders and order-level clades. -
Catalogue of Fungus Fair
Oakland Museum, 6-7 December 2003 Mycological Society of San Francisco Catalogue of Fungus Fair Introduction ......................................................................................................................2 History ..............................................................................................................................3 Statistics ...........................................................................................................................4 Total collections (excluding "sp.") Numbers of species by multiplicity of collections (excluding "sp.") Numbers of taxa by genus (excluding "sp.") Common names ................................................................................................................6 New names or names not recently recorded .................................................................7 Numbers of field labels from tables Species found - listed by name .......................................................................................8 Species found - listed by multiplicity on forays ..........................................................13 Forays ranked by numbers of species .........................................................................16 Larger forays ranked by proportion of unique species ...............................................17 Species found - by county and by foray ......................................................................18 Field and Display Label examples ................................................................................27 -
A Taxonomic and Phylogenetic Investigation of Conifer Endophytes
A Taxonomic and Phylogenetic Investigation of Conifer Endophytes of Eastern Canada by Joey B. Tanney A thesis submitted to the Faculty of Graduate and Postdoctoral Affairs in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biology Carleton University Ottawa, Ontario © 2016 Abstract Research interest in endophytic fungi has increased substantially, yet is the current research paradigm capable of addressing fundamental taxonomic questions? More than half of the ca. 30,000 endophyte sequences accessioned into GenBank are unidentified to the family rank and this disparity grows every year. The problems with identifying endophytes are a lack of taxonomically informative morphological characters in vitro and a paucity of relevant DNA reference sequences. A study involving ca. 2,600 Picea endophyte cultures from the Acadian Forest Region in Eastern Canada sought to address these taxonomic issues with a combined approach involving molecular methods, classical taxonomy, and field work. It was hypothesized that foliar endophytes have complex life histories involving saprotrophic reproductive stages associated with the host foliage, alternative host substrates, or alternate hosts. Based on inferences from phylogenetic data, new field collections or herbarium specimens were sought to connect unidentifiable endophytes with identifiable material. Approximately 40 endophytes were connected with identifiable material, which resulted in the description of four novel genera and 21 novel species and substantial progress in endophyte taxonomy. Endophytes were connected with saprotrophs and exhibited reproductive stages on non-foliar tissues or different hosts. These results provide support for the foraging ascomycete hypothesis, postulating that for some fungi endophytism is a secondary life history strategy that facilitates persistence and dispersal in the absence of a primary host. -
Cadophora Margaritata Sp. Nov. and Other Fungi Associated with the Longhorn Beetles Anoplophora Glabripennis and Saperda Carcharias in Finland
Antonie van Leeuwenhoek https://doi.org/10.1007/s10482-018-1112-y ORIGINAL PAPER Cadophora margaritata sp. nov. and other fungi associated with the longhorn beetles Anoplophora glabripennis and Saperda carcharias in Finland Riikka Linnakoski . Risto Kasanen . Ilmeini Lasarov . Tiia Marttinen . Abbot O. Oghenekaro . Hui Sun . Fred O. Asiegbu . Michael J. Wingfield . Jarkko Hantula . Kari Helio¨vaara Received: 25 January 2018 / Accepted: 7 June 2018 Ó Springer International Publishing AG, part of Springer Nature 2018 Abstract Symbiosis with microbes is crucial for obtained from Populus tremula colonised by S. survival and development of wood-inhabiting long- carcharias, and Betula pendula and Salix caprea horn beetles (Coleoptera: Cerambycidae). Thus, infested by A. glabripennis, and compared these to the knowledge of the endemic fungal associates of insects samples collected from intact wood material. This would facilitate risk assessment in cases where a new study detected a number of plant pathogenic and invasive pest occupies the same ecological niche. saprotrophic fungi, and species with known potential However, the diversity of fungi associated with insects for enzymatic degradation of wood components. remains poorly understood. The aim of this study was Phylogenetic analyses of the most commonly encoun- to investigate fungi associated with the native large tered fungi isolated from the longhorn beetles revealed poplar longhorn beetle (Saperda carcharias) and the an association with fungi residing in the Cadophora– recently introduced Asian longhorn beetle (Ano- Mollisia species complex. A commonly encountered plophora glabripennis) infesting hardwood trees in fungus was Cadophora spadicis, a recently described Finland. We studied the cultivable fungal associates fungus associated with wood-decay. -
Mollisia Friday, 22 March 2019 9:46 PM
Mollisia Friday, 22 March 2019 9:46 PM These notes were Initially prepared in late 2017, additional species have subsequently been collected in NZ, but this summary gives an idea of the diversity present in NZs native forests, and its relationship to that found in the rest of the world. Data is presented as an ITS gene tree, comparing the 50 or so New Zealand Mollisia and Mollisia-like species for which there are cultures, to specimens treated by Joey Tanney (2016; Phialocephala) , Brian Douglas (2013, PhD thesis), and Genbank BLAST matches to accessions from type specimens (Ascocoryne, Helicodendron and Dimorphospora (Gelatinodiscaceae) as outgroups). UNITE Species Hypothesis matches are noted. Morphology has barely been compared, but in the case of NZ Species 31 morphology does not support the ITS-based genetic match. Any matches need confirming with a more discriminatory gene; RPB1 has been used by Tanney and others. Generic limits remain poorly resolved. Data in Geneious Dan Discos\28 Sept 2017\Mollisia 'Mollisia' in the sense discussed here includes most of the New Zealand specimens having a sexual fruiting body with a Dermateaceae morphology in the sense of Korf (non-gelatinous excipulum of more or less globose cells, usually with dark walls) that have an ITS sequence available, in morphologically defined genera such as Mollisia, Pyrenopeziza, Niptera, and Tapesia. Also included are the (as yet unpublished) sequences from the Mollisia PhD thesis of Brian Douglas, the Phialocephala sequences from Joey Tanney (2016), and sequences that represent type specimens from Genbank BLAST search results based on the New Zealand sequences. -
Chlorovibrissea Korfii Sp. Nov. from Northern Hemisphere and Vibrissea Flavovirens New to China
A peer-reviewed open-access journal MycoKeys 26:Chlorovibrissea 1–11 (2017) korfii sp. nov. from northern hemisphere and Vibrissea flavovirens... 1 doi: 10.3897/mycokeys.26.14506 RESEARCH ARTICLE MycoKeys http://mycokeys.pensoft.net Launched to accelerate biodiversity research Chlorovibrissea korfii sp. nov. from northern hemisphere and Vibrissea flavovirens new to China Huan-Di Zheng1, Wen-Ying Zhuang1,2 1 State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China 2 University of Chinese Academy of Sciences, Beijing 100049, China Corresponding author: Wen-Ying Zhuang ([email protected]) Academic editor: A. Miller | Received 13 Julne 2017 | Accepted 7 July 2017 | Published 4 August 2017 Citation: Zheng H-D, Zhuang W-Y (2017) Chlorovibrissea korfiisp. nov. from northern hemisphere and Vibrissea flavovirens new to China. MycoKeys 26: 1–11. https://doi.org/10.3897/mycokeys.26.14506 Abstract A new species, Chlorovibrissea korfii, is described and illustrated, which is distinct from other members of the genus by the overall pale greenish apothecia 0.8–2.0 mm in diam. and 0.6–1.5 mm high, J+ asci 70–83 × 4.5–5.5 μm, and non-septate ascospores 44–52 × 1.2–1.5 μm. This is the first species of Chlo- rovibrissea reported from northern hemisphere. Vibrissea flavovirens is reported from China for the first time. Sequence analyses of the internal transcribed spacer of nuclear ribosomal DNA are used to confirm the affinity of the two taxa. Key words morphology, sequence analysis, taxonomy, Vibrisseaceae Introduction Vibrisseaceae was erected by Korf in 1990 to accommodate the genera Vibrissea Fr., Chlorovibrissea L.M. -
A Multigene Phylogeny Toward a New Phylogenetic Classification of Leotiomycetes Peter R
Johnston et al. IMA Fungus (2019) 10:1 https://doi.org/10.1186/s43008-019-0002-x IMA Fungus RESEARCH Open Access A multigene phylogeny toward a new phylogenetic classification of Leotiomycetes Peter R. Johnston1* , Luis Quijada2, Christopher A. Smith1, Hans-Otto Baral3, Tsuyoshi Hosoya4, Christiane Baschien5, Kadri Pärtel6, Wen-Ying Zhuang7, Danny Haelewaters2,8, Duckchul Park1, Steffen Carl5, Francesc López-Giráldez9, Zheng Wang10 and Jeffrey P. Townsend10 Abstract Fungi in the class Leotiomycetes are ecologically diverse, including mycorrhizas, endophytes of roots and leaves, plant pathogens, aquatic and aero-aquatic hyphomycetes, mammalian pathogens, and saprobes. These fungi are commonly detected in cultures from diseased tissue and from environmental DNA extracts. The identification of specimens from such character-poor samples increasingly relies on DNA sequencing. However, the current classification of Leotiomycetes is still largely based on morphologically defined taxa, especially at higher taxonomic levels. Consequently, the formal Leotiomycetes classification is frequently poorly congruent with the relationships suggested by DNA sequencing studies. Previous class-wide phylogenies of Leotiomycetes have been based on ribosomal DNA markers, with most of the published multi-gene studies being focussed on particular genera or families. In this paper we collate data available from specimens representing both sexual and asexual morphs from across the genetic breadth of the class, with a focus on generic type species, to present a phylogeny based on up to 15 concatenated genes across 279 specimens. Included in the dataset are genes that were extracted from 72 of the genomes available for the class, including 10 new genomes released with this study. To test the statistical support for the deepest branches in the phylogeny, an additional phylogeny based on 3156 genes from 51 selected genomes is also presented. -
High-Level Classification of the Fungi and a Tool for Evolutionary Ecological Analyses
Fungal Diversity (2018) 90:135–159 https://doi.org/10.1007/s13225-018-0401-0 (0123456789().,-volV)(0123456789().,-volV) High-level classification of the Fungi and a tool for evolutionary ecological analyses 1,2,3 4 1,2 3,5 Leho Tedersoo • Santiago Sa´nchez-Ramı´rez • Urmas Ko˜ ljalg • Mohammad Bahram • 6 6,7 8 5 1 Markus Do¨ ring • Dmitry Schigel • Tom May • Martin Ryberg • Kessy Abarenkov Received: 22 February 2018 / Accepted: 1 May 2018 / Published online: 16 May 2018 Ó The Author(s) 2018 Abstract High-throughput sequencing studies generate vast amounts of taxonomic data. Evolutionary ecological hypotheses of the recovered taxa and Species Hypotheses are difficult to test due to problems with alignments and the lack of a phylogenetic backbone. We propose an updated phylum- and class-level fungal classification accounting for monophyly and divergence time so that the main taxonomic ranks are more informative. Based on phylogenies and divergence time estimates, we adopt phylum rank to Aphelidiomycota, Basidiobolomycota, Calcarisporiellomycota, Glomeromycota, Entomoph- thoromycota, Entorrhizomycota, Kickxellomycota, Monoblepharomycota, Mortierellomycota and Olpidiomycota. We accept nine subkingdoms to accommodate these 18 phyla. We consider the kingdom Nucleariae (phyla Nuclearida and Fonticulida) as a sister group to the Fungi. We also introduce a perl script and a newick-formatted classification backbone for assigning Species Hypotheses into a hierarchical taxonomic framework, using this or any other classification system. We provide an example -
Two New Records from Dermateaceae Family for Turkish Mycobiota Dermateaceae Familyasından Türkiye Mikobiyotası İçin İki Ye
Yüzüncü Yıl Üniversitesi Fen Bilimleri Enstitüsü Dergisi/ Journal of the Institute of Natural & Applied Sciences 22 (2): 157-161, 2017 Araştırma Makalesi / Research Article Two New Records from Dermateaceae Family for Turkish Mycobiota Yusuf Uzun1, İsmail Acar2*, Mustafa Emre Akçay3 1Department of Pharmaceutical Sciences, Faculty of Pharmacy, Van Y.Y.U, 65080, Van, Turkey 2Department of Organic Agriculture, Başkale Vocational High School, Van Y.Y.U, 65080, Van, Turkey 3Department of Biology, Faculty of Science, Van Y.Y.U, 65080, Van, Turkey * [email protected] Abstract: The Dermateaceae is a family within the order Helotiales. In this study, Mollisia ligni (Desm.) P. Karst. and Pyrenopeziza rubi (Fr.) Rehm species of Dermateaceae family were newly reported from Bingöl province (Turkey). Short descriptions and the photographs of the species are ensured and discussed briefly. Keywords: Mycobiota, Mollisia, Pyrenopeziza, New record, Bingöl, Turkey Dermateaceae Familyasından Türkiye Mikobiyotası İçin İki Yeni Kayıt Özet: Dermataceae, Helotiales ordosu içinde yer alan bir mantar familyasıdır. Bu çalışmada, Dermateaceae familyasına ait Mollisia ligni (Desm.) P. Karst. ve Pyrenopeziza rubi (Fr.) Rehm türleri Bingöl ilinden ilk kez rapor edilmiştir. Türlerin kısa deskripsiyonları ve fotoğrafları verilmiş, kısaca tartışılmıştır. Anahtar kelimeler: Mikobiyota, Mollisia, Pyrenopeziza, Yeni kayıt, Bingöl, Türkiye Introduction 2016; Denğiz ve Demirel, 2016; Doğan The family Dermateaceae is here et al., 2016; and Allı et al., 2017), defined in the traditional sense, based on Mollisia ligni (Desm.) P. Karst. and excipulum composed, at yeast at the Pyrenopeziza rubi (Fr.) Rehm have not base, of globose or angular elements been previously reported from Turkey. which are usually pigmented (Nauta and The aim of this study is to make a Spooner, 1999). -
Studies in the Genus Mollisia Sl II
CZECH MYCOL. 58(1–2): 125–148, 2006 Studies in the genus Mollisia s. l. II: Revision of some species of Mollisia and Tapesia described by J. Velenovský (part 1) ANDREAS GMINDER Maurerstr. 22, 07749 Jena, Germany [email protected] Gminder A. (2006): Studies in the genus Mollisia s. l. II: Revision of some species of Mollisia and Tapesia described by J. Velenovský (part 1). – Czech Mycol. 58(1–2): 125–148. The author presents the results of his revision of several mollisiaceous species described by J. Velenovský. Some of these are seen as good species and are combined into Mollisia: M. ladae comb. nov., M. peruni comb. nov., M. phragmitis comb. nov., M. velenovskyi nom. nov. Tapesia sesleriae is seen as a nomen dubium and Mollisia sesleriae ss. Krieglsteiner (1999) is therefore described as M. lothariana spec. nov. Key words: Ascomycota, Helotiales, Dermateaceae, Mollisioideae, type studies. Gminder A. (2006): Studie rodu Mollisia s. l. II: Revize některých druhů rodů Mollisia a Tapesia popsaných Josefem Velenovským (část 1). – Czech Mycol. 58(1–2): 125–148. Autor předkládá výsledky své revize některých druhů mollisioidních hub popsaných J. Velenovským. Některé z nich jsou dobrými druhy a jsou přeřazeny do rodu Mollisia: M. ladae comb. nov., M. peruni comb. nov., M. phragmitis comb. nov., M. velenovskyi nom. nov. Tapesia sesleriae se jeví jako pochybný druh a Mollisia sesleriae ss. Krieglsteiner (1999) je proto popsána jako M. lothariana spec. nov. INTRODUCTION Velenovský (1934) in his circumscription of the family Mollisiaceae Rehm in- cludes the genera Belonidium, Belonopsis, Cejpia gen. nov., Coronellaria, Crustula gen. nov., Mollisia, Niptera, Tapesia and Trichobelonium. -
Evolution of Helotialean Fungi (Leotiomycetes, Pezizomycotina): a Nuclear Rdna Phylogeny
Molecular Phylogenetics and Evolution 41 (2006) 295–312 www.elsevier.com/locate/ympev Evolution of helotialean fungi (Leotiomycetes, Pezizomycotina): A nuclear rDNA phylogeny Zheng Wang a,¤, Manfred Binder a, Conrad L. Schoch b, Peter R. Johnston c, Joseph W. Spatafora b, David S. Hibbett a a Department of Biology, Clark University, 950 Main Street, Worcester, MA 01610, USA b Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA c Herbarium PDD, Landcare Research, Private bag 92170, Auckland, New Zealand Received 5 December 2005; revised 21 April 2006; accepted 24 May 2006 Available online 3 June 2006 Abstract The highly divergent characters of morphology, ecology, and biology in the Helotiales make it one of the most problematic groups in traditional classiWcation and molecular phylogeny. Sequences of three rDNA regions, SSU, LSU, and 5.8S rDNA, were generated for 50 helotialean fungi, representing 11 out of 13 families in the current classiWcation. Data sets with diVerent compositions were assembled, and parsimony and Bayesian analyses were performed. The phylogenetic distribution of lifestyle and ecological factors was assessed. Plant endophytism is distributed across multiple clades in the Leotiomycetes. Our results suggest that (1) the inclusion of LSU rDNA and a wider taxon sampling greatly improves resolution of the Helotiales phylogeny, however, the usefulness of rDNA in resolving the deep relationships within the Leotiomycetes is limited; (2) a new class Geoglossomycetes, including Geoglossum, Trichoglossum, and Sarcoleo- tia, is the basal lineage of the Leotiomyceta; (3) the Leotiomycetes, including the Helotiales, Erysiphales, Cyttariales, Rhytismatales, and Myxotrichaceae, is monophyletic; and (4) nine clades can be recognized within the Helotiales.