A Role for Dazl in Commitment to Gametogenic Fate in Embryonic Germ Cells of C57BL/6 Mice
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Whole-Genome Microarray Detects Deletions and Loss of Heterozygosity of Chromosome 3 Occurring Exclusively in Metastasizing Uveal Melanoma
Anatomy and Pathology Whole-Genome Microarray Detects Deletions and Loss of Heterozygosity of Chromosome 3 Occurring Exclusively in Metastasizing Uveal Melanoma Sarah L. Lake,1 Sarah E. Coupland,1 Azzam F. G. Taktak,2 and Bertil E. Damato3 PURPOSE. To detect deletions and loss of heterozygosity of disease is fatal in 92% of patients within 2 years of diagnosis. chromosome 3 in a rare subset of fatal, disomy 3 uveal mela- Clinical and histopathologic risk factors for UM metastasis noma (UM), undetectable by fluorescence in situ hybridization include large basal tumor diameter (LBD), ciliary body involve- (FISH). ment, epithelioid cytomorphology, extracellular matrix peri- ϩ ETHODS odic acid-Schiff-positive (PAS ) loops, and high mitotic M . Multiplex ligation-dependent probe amplification 3,4 5 (MLPA) with the P027 UM assay was performed on formalin- count. Prescher et al. showed that a nonrandom genetic fixed, paraffin-embedded (FFPE) whole tumor sections from 19 change, monosomy 3, correlates strongly with metastatic death, and the correlation has since been confirmed by several disomy 3 metastasizing UMs. Whole-genome microarray analy- 3,6–10 ses using a single-nucleotide polymorphism microarray (aSNP) groups. Consequently, fluorescence in situ hybridization were performed on frozen tissue samples from four fatal dis- (FISH) detection of chromosome 3 using a centromeric probe omy 3 metastasizing UMs and three disomy 3 tumors with Ͼ5 became routine practice for UM prognostication; however, 5% years’ metastasis-free survival. to 20% of disomy 3 UM patients unexpectedly develop metas- tases.11 Attempts have therefore been made to identify the RESULTS. Two metastasizing UMs that had been classified as minimal region(s) of deletion on chromosome 3.12–15 Despite disomy 3 by FISH analysis of a small tumor sample were found these studies, little progress has been made in defining the key on MLPA analysis to show monosomy 3. -
Evidence for Differential Alternative Splicing in Blood of Young Boys With
Stamova et al. Molecular Autism 2013, 4:30 http://www.molecularautism.com/content/4/1/30 RESEARCH Open Access Evidence for differential alternative splicing in blood of young boys with autism spectrum disorders Boryana S Stamova1,2,5*, Yingfang Tian1,2,4, Christine W Nordahl1,3, Mark D Shen1,3, Sally Rogers1,3, David G Amaral1,3 and Frank R Sharp1,2 Abstract Background: Since RNA expression differences have been reported in autism spectrum disorder (ASD) for blood and brain, and differential alternative splicing (DAS) has been reported in ASD brains, we determined if there was DAS in blood mRNA of ASD subjects compared to typically developing (TD) controls, as well as in ASD subgroups related to cerebral volume. Methods: RNA from blood was processed on whole genome exon arrays for 2-4–year-old ASD and TD boys. An ANCOVA with age and batch as covariates was used to predict DAS for ALL ASD (n=30), ASD with normal total cerebral volumes (NTCV), and ASD with large total cerebral volumes (LTCV) compared to TD controls (n=20). Results: A total of 53 genes were predicted to have DAS for ALL ASD versus TD, 169 genes for ASD_NTCV versus TD, 1 gene for ASD_LTCV versus TD, and 27 genes for ASD_LTCV versus ASD_NTCV. These differences were significant at P <0.05 after false discovery rate corrections for multiple comparisons (FDR <5% false positives). A number of the genes predicted to have DAS in ASD are known to regulate DAS (SFPQ, SRPK1, SRSF11, SRSF2IP, FUS, LSM14A). In addition, a number of genes with predicted DAS are involved in pathways implicated in previous ASD studies, such as ROS monocyte/macrophage, Natural Killer Cell, mTOR, and NGF signaling. -
RNA-Binding Proteins in Human Oogenesis: Balancing Differentiation and Self-Renewal in the Female Fetal Germline
Stem Cell Research 21 (2017) 193–201 Contents lists available at ScienceDirect Stem Cell Research journal homepage: www.elsevier.com/locate/scr RNA-binding proteins in human oogenesis: Balancing differentiation and self-renewal in the female fetal germline Roseanne Rosario a, Andrew J. Childs b, Richard A. Anderson a,⁎ a MRC Centre for Reproductive Health, Queen's Medical Research Institute, University of Edinburgh, 47 Little France Crescent, Edinburgh EH16 4TJ, UK b Department of Comparative Biomedical Sciences, The Royal Veterinary College, London NW1 0TU, UK article info abstract Article history: Primordial germ cells undergo three significant processes on their path to becoming primary oocytes: the initia- Received 7 October 2016 tion of meiosis, the formation and breakdown of germ cell nests, and the assembly of single oocytes into primor- Received in revised form 29 March 2017 dial follicles. However at the onset of meiosis, the germ cell becomes transcriptionally silenced. Consequently Accepted 13 April 2017 translational control of pre-stored mRNAs plays a central role in coordinating gene expression throughout the re- Available online 18 April 2017 mainder of oogenesis; RNA binding proteins are key to this regulation. In this review we examine the role of ex- Keywords: emplars of such proteins, namely LIN28, DAZL, BOLL and FMRP, and highlight how their roles during germ cell Germ cell differentiation development are critical to oogenesis and the establishment of the primordial follicle pool. RNA binding proteins © 2017 The Authors. -
Expression of DAZL Gene in Selected Tissues and Association of Its Polymorphisms with Testicular Size in Hu Sheep
animals Article Expression of DAZL Gene in Selected Tissues and Association of Its Polymorphisms with Testicular Size in Hu Sheep 1, 1, 1 1,2 1 1, Zehu Yuan y, Jing Luo y, Li Wang , Fadi Li , Wanhong Li and Xiangpeng Yue * 1 State Key Laboratory of Grassland Agro-Ecosystems, Key Laboratory of Grassland Livestock Industry Innovation, Ministry of Agriculture and Rural Affairs, Engineering Research Center of Grassland Industry, Ministry of Education, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou 730020, China; [email protected] (Z.Y.); [email protected] (J.L.); [email protected] (L.W.); [email protected] (F.L.); [email protected] (W.L.) 2 Engineering Laboratory of Sheep Breeding and Reproduction Biotechnology in Gansu Province, Minqin 733300, China * Correspondence: [email protected] These authors contributed equally to this work. y Received: 9 March 2020; Accepted: 20 April 2020; Published: 23 April 2020 Simple Summary: The deleted in azoospermia-like (DAZL) is an RNA binding protein coding gene in autosomal, playing important roles in testicular development and gametogenesis. In this paper, we found that DAZL is extremely highly expressed in testis compared with other organs and reaches to a peak at sex maturity (6-month old) in testis. Two single nucleotide polymorphisms (SNPs) within DAZL were found to have significant effect on the variation coefficient between left and right epididymis weight. Abstract: The deleted in azoospermia-like (DAZL) gene encoding an RNA binding protein is pivotal in gametogenesis in lots of species and also acts as a pre-meiosis marker. -
Role and Regulation of the P53-Homolog P73 in the Transformation of Normal Human Fibroblasts
Role and regulation of the p53-homolog p73 in the transformation of normal human fibroblasts Dissertation zur Erlangung des naturwissenschaftlichen Doktorgrades der Bayerischen Julius-Maximilians-Universität Würzburg vorgelegt von Lars Hofmann aus Aschaffenburg Würzburg 2007 Eingereicht am Mitglieder der Promotionskommission: Vorsitzender: Prof. Dr. Dr. Martin J. Müller Gutachter: Prof. Dr. Michael P. Schön Gutachter : Prof. Dr. Georg Krohne Tag des Promotionskolloquiums: Doktorurkunde ausgehändigt am Erklärung Hiermit erkläre ich, dass ich die vorliegende Arbeit selbständig angefertigt und keine anderen als die angegebenen Hilfsmittel und Quellen verwendet habe. Diese Arbeit wurde weder in gleicher noch in ähnlicher Form in einem anderen Prüfungsverfahren vorgelegt. Ich habe früher, außer den mit dem Zulassungsgesuch urkundlichen Graden, keine weiteren akademischen Grade erworben und zu erwerben gesucht. Würzburg, Lars Hofmann Content SUMMARY ................................................................................................................ IV ZUSAMMENFASSUNG ............................................................................................. V 1. INTRODUCTION ................................................................................................. 1 1.1. Molecular basics of cancer .......................................................................................... 1 1.2. Early research on tumorigenesis ................................................................................. 3 1.3. Developing -
Through a Network of Polya-Proximal Mrna Connections, Dazl Governs Germ Cell Survival
y: Ope g n A lo c ro c d e s n s A ISSN: 2167-0250 Andrology- Open Access Editorial Through a Network of PolyA-Proximal mRNA Connections, Dazl Governs Germ Cell Survival Tobin Eze* Department of Community Medicine, University of Port Harcourt Teaching Hospital, Port Harcourt, Nigeria DESCRIPTION RNA Restricting Proteins (RBPs) are powerful post- mRNA soundness or interpretation. What's more, yeast two half transcriptional controllers of quality articulation. In the core, breed examination of Dazl-interactors distinguished RBPs with RBPs can adjust pre-mRNA handling to produce mRNAs with cytoplasmic jobs in mRNA guideline including Pum2, QK3, and various coding and non-coding successions. In the cytoplasm, the polyA-restricting protein Pabpc1. Nonetheless, the shortage RBPs impact mRNA restriction, interpretation, and strength, and variable number of germ cells present in DAZL KO mice regularly through associations with 3' Untranslated Locales have introduced significant hindrances to examining Dazl's (3'UTRs). Guideline of mRNA preparing and interpretation is immediate in vivo function(s) in the male germline. These particularly important during spermatogenesis, the profoundly endeavors have recommended assorted capacities for Dazl in requested interaction of post pregnancy male germ cell various cell settings, remembering jobs for mRNA adjustment, advancement that yields haploid spermatozoa. The initial not stress granule get together, mRNA restriction, and many post pregnancy days are basic for the foundation of interpretation. Notwithstanding, transfection tests have shown spermatogonial immature microorganisms which are needed for that Dazl can effectsly affect a similar correspondent RNA in proceeded with sperm creation all through life. The significance various physical cell lines. -
Dynamic Changes in RNA–Protein Interactions and RNA Secondary Structure in Mammalian Erythropoiesis
Published Online: 27 July, 2021 | Supp Info: http://doi.org/10.26508/lsa.202000659 Downloaded from life-science-alliance.org on 30 September, 2021 Resource Dynamic changes in RNA–protein interactions and RNA secondary structure in mammalian erythropoiesis Mengge Shan1,2 , Xinjun Ji3, Kevin Janssen5 , Ian M Silverman3 , Jesse Humenik3, Ben A Garcia5, Stephen A Liebhaber3,4, Brian D Gregory1,2 Two features of eukaryotic RNA molecules that regulate their and RNA secondary structure. These techniques generally either post-transcriptional fates are RNA secondary structure and RNA- use chemical probing agents or structure-specific RNases (single- binding protein (RBP) interaction sites. However, a comprehen- stranded RNases (ssRNases) and double-stranded RNases [dsRNa- sive global overview of the dynamic nature of these sequence ses]) to provide site-specific evidence for a region being in single- or features during erythropoiesis has never been obtained. Here, we double-stranded configurations (4, 5). use our ribonuclease-mediated structure and RBP-binding site To date, the known repertoire of RBP–RNA interaction sites has mapping approach to reveal the global landscape of RNA sec- been built on a protein-by-protein basis, with studies identifying ondary structure and RBP–RNA interaction sites and the dynamics the targets of a single protein of interest, often through the use of of these features during this important developmental process. techniques such as crosslinking and immunoprecipitation se- We identify dynamic patterns of RNA secondary structure and RBP quencing (CLIP-seq) (6). In CLIP-seq, samples are irradiated with UV binding throughout the process and determine a set of corre- to induce the cross-linking of proteins to their RNA targets. -
Genomic and Expression Profiling of Human Spermatocytic Seminomas: Primary Spermatocyte As Tumorigenic Precursor and DMRT1 As Candidate Chromosome 9 Gene
Research Article Genomic and Expression Profiling of Human Spermatocytic Seminomas: Primary Spermatocyte as Tumorigenic Precursor and DMRT1 as Candidate Chromosome 9 Gene Leendert H.J. Looijenga,1 Remko Hersmus,1 Ad J.M. Gillis,1 Rolph Pfundt,4 Hans J. Stoop,1 Ruud J.H.L.M. van Gurp,1 Joris Veltman,1 H. Berna Beverloo,2 Ellen van Drunen,2 Ad Geurts van Kessel,4 Renee Reijo Pera,5 Dominik T. Schneider,6 Brenda Summersgill,7 Janet Shipley,7 Alan McIntyre,7 Peter van der Spek,3 Eric Schoenmakers,4 and J. Wolter Oosterhuis1 1Department of Pathology, Josephine Nefkens Institute; Departments of 2Clinical Genetics and 3Bioinformatics, Erasmus Medical Center/ University Medical Center, Rotterdam, the Netherlands; 4Department of Human Genetics, Radboud University Medical Center, Nijmegen, the Netherlands; 5Howard Hughes Medical Institute, Whitehead Institute and Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts; 6Clinic of Paediatric Oncology, Haematology and Immunology, Heinrich-Heine University, Du¨sseldorf, Germany; 7Molecular Cytogenetics, Section of Molecular Carcinogenesis, The Institute of Cancer Research, Sutton, Surrey, United Kingdom Abstract histochemistry, DMRT1 (a male-specific transcriptional regulator) was identified as a likely candidate gene for Spermatocytic seminomas are solid tumors found solely in the involvement in the development of spermatocytic seminomas. testis of predominantly elderly individuals. We investigated these tumors using a genome-wide analysis for structural and (Cancer Res 2006; 66(1): 290-302) numerical chromosomal changes through conventional kar- yotyping, spectral karyotyping, and array comparative Introduction genomic hybridization using a 32 K genomic tiling-path Spermatocytic seminomas are benign testicular tumors that resolution BAC platform (confirmed by in situ hybridization). -
Pumilio Proteins Regulate Translation in Embryonic Stem Cells and Are Essential for Early Embryonic Development Katherine Elizabeth Uyhazi Yale University
Yale University EliScholar – A Digital Platform for Scholarly Publishing at Yale Yale Medicine Thesis Digital Library School of Medicine 12-2012 Pumilio Proteins Regulate Translation in Embryonic Stem Cells and are Essential for Early Embryonic Development Katherine Elizabeth Uyhazi Yale University. Follow this and additional works at: http://elischolar.library.yale.edu/ymtdl Part of the Medicine and Health Sciences Commons Recommended Citation Uyhazi, Katherine Elizabeth, "Pumilio Proteins Regulate Translation in Embryonic Stem Cells and are Essential for Early Embryonic Development" (2012). Yale Medicine Thesis Digital Library. 2189. http://elischolar.library.yale.edu/ymtdl/2189 This Open Access Dissertation is brought to you for free and open access by the School of Medicine at EliScholar – A Digital Platform for Scholarly Publishing at Yale. It has been accepted for inclusion in Yale Medicine Thesis Digital Library by an authorized administrator of EliScholar – A Digital Platform for Scholarly Publishing at Yale. For more information, please contact [email protected]. ABSTRACT Pumilio Proteins Regulate Translation in Embryonic Stem Cells and are Essential for Early Embryonic Development Katherine E. Uyhazi 2012 Embryonic stem (ES) cells are defined by their dual abilities to self-renew and to differentiate into any cell type in the body. This vast potential is precisely controlled by spatial and temporal gene regulation at transcriptional, post-transcriptional, and epigenetic levels. Recent studies have revealed several transcription factors that are essential for stem cell self-renewal and pluripotency, but the role of translational control in ES cells is poorly understood. Translational control is a fundamental mechanism of gene regulation during early development, and likely explains the discrepancies between the transcriptome and proteome profiles of stem cells and their differentiated progeny. -
DAZL Binds to the Transcripts of Several Tssk Genes in Germ Cells
BMB reports DAZL binds to the transcripts of several Tssk genes in germ cells Mei Zeng, Wenqian Deng, Xinying Wang, Weimin Qiu ,Yanyan Liu, Huaqin Sun, Dachang Tao, Sizhong Zhang & Yongxin Ma* Department of Medical Genetics, West China Hospital; Division of Human Morbid Genomics, State Key Laboratory of Biotherapy, Sichuan University, Chengdu, 610041, P.R.China. The Dazl gene encodes a germ-cell-specific RNA-binding pro- cluding a modest reduction in germ cell numbers before birth tein which is essential for spermatogenesis. It has been pro- and a failure to progress from Aaligned to A1 spermatogonia (4, posed that this protein (DAZL) binds to RNA in the cytoplasm 5). Although some cells progress beyond this point, the fur- of germ cells and controls spermatogenesis. Using the specific thest that cells have been seen to advance along the meiotic nucleic acids associated with proteins (SNAAP) technique, we pathway is to leptotene of meiotic prophaseⅠ (6). This in- identified 17 target mRNAs bound by mDAZL. Among these dicates that DAZL has several roles: in mitotic proliferation be- transcripts, we focused on TSSK2, which encodes a testis-spe- fore meiosis, during spermatogonial development and in the cific serine/threonine kinase. To date, five TSSK family mem- leptotene to zygotene transition. Heterozygous DAZL-deficient bers have been cloned, and all are exclusively expressed in mice have an increased percentage of malformed spermato- the testis. We demonstrated that in addition to the TSSK1 zoa, indicating a gene dosage effect and suggesting that DAZL 3’UTR , the 3’UTRs of TSSKs 2 and 4 were bound by human may also be involved in the control of major morphological and mouse DAZL, and that human DAZL (hDAZL) bound to changes during the post-meiotic phase of spermatogenesis the 3’UTR of human TSSK5 (hTSSK5). -
Dazl Regulates Mouse Embryonic Germ Cell Development
Dazl regulates mouse embryonic germ cell development by Mark E. Gill B.S. Biochemistry and Molecular Biology and Mathematics University at Albany, State University of New York SUBMITTED TO THE DEPARTMENT OF BIOLOGY IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY IN BIOLOGY AT THE MASSACHUS TS INT E MASSACHUSETTS INSTITUTE OF TECHNOLOGY OF TECHNOLOGY FEB 0 4 2010 FEBRUARY 2010 LIBRARIES @ 2010 Massachusetts Institute of Technology. All rights reserved. ARCHIVES . I Signature of Author: Department of Biology November 2, 2009 Certified by: David C. Page Professor of Biology 'X Jhesis Supervisor Accepted by: Tania Baker Professor of Biology Chair, Committee for Graduate Students Dazl regulates mouse embryonic germ cell development by Mark E. Gill Submitted to the Department of Biology on November 2, 2009 in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy in Biology ABSTRACT In the mouse, germ cells can undergo differentiation to become either oocytes or spermatozoa in response to sex of their gonadal environment. The nature of the germ cell-intrinsic aspects of this signaling have not been well studied. The earliest known sex-specific difference in germ cells is the initiation of meiosis in female, but not male, embryonic germ cells. Experiments were performed showing that germ cells of both sexes transit through a state, the meiosis competent germ cell, that is required for initiation of meiosis. Acquisition of this state requires the function of the germ cell- specific RNA binding protein DAZL. The sufficiency for the absence of meiosis to drive male germ cell differentiation was then tested by examining non-meiotic XX germ cells in the Dazl-deficient ovary. -
Intermolecular Interactions of Homologs of Germ Plasm Components in Mammalian Germ Cells Mark S
Dominican Scholar Collected Faculty and Staff Scholarship Faculty and Staff Scholarship 2007 Intermolecular Interactions of Homologs of Germ Plasm Components in Mammalian Germ Cells Mark S. Fox Center for Reproductive Sciences; Human Embryonic Stem Cell Research Center; Department of Obstetrics, Gynecology and Reproductive Sciences; Institute for Stem Cell and Tissue Biology; Departments of Physiology and Urology; University of California at San Francisco Amander T. Clark Center for Reproductive Sciences; Human Embryonic Stem Cell Research Center; Department of Obstetrics, Gynecology and Reproductive Sciences; Institute for Stem Cell and Tissue Biology; Departments of Physiology and Urology; University of California at San Francisco Mohammed El Majdoubi Center for Reproductive Sciences; Human Embryonic Stem Cell Research Center; Department of Obstetrics, Gynecology and Reproductive Sciences; Institute for Stem Cell and Tissue Biology; Departments of Physiology and Urology; University of California at San Francisco, [email protected] Recommended Citation Fox, Mark S.; Clark, Amander T.; El Majdoubi, Mohammed; Vigne, Jean-Louis; Urano, Jun; Hostetler, Chris E.; Griswold, Michael D.; Weiner, Richard I.; and Reijo Pera, Renee A., "Intermolecular Interactions of Homologs of Germ Plasm Components in Mammalian Germ Cells" (2007). Collected Faculty and Staff Scholarship. 308. https://scholar.dominican.edu/all-faculty/308 DOI http://dx.doi.org/https://doi.org/10.1016/j.ydbio.2006.08.047 This Article is brought to you for free and open access by the Faculty and Staff Scholarship at Dominican Scholar. It has been accepted for inclusion in Collected Faculty and Staff Scholarship by an authorized administrator of Dominican Scholar. For more information, please contact [email protected].