Capripoxvirus Tissue Tropism and Shedding: a Quantitative Study in Experimentally Infected Sheep and Goats ⁎ Timothy R
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Recombinant and Chimeric Viruses
Recombinant and chimeric viruses: Evaluation of risks associated with changes in tropism Ben P.H. Peeters Animal Sciences Group, Wageningen University and Research Centre, Division of Infectious Diseases, P.O. Box 65, 8200 AB Lelystad, The Netherlands. May 2005 This report represents the personal opinion of the author. The interpretation of the data presented in this report is the sole responsibility of the author and does not necessarily represent the opinion of COGEM or the Animal Sciences Group. Dit rapport is op persoonlijke titel door de auteur samengesteld. De interpretatie van de gepresenteerde gegevens komt geheel voor rekening van de auteur en representeert niet de mening van de COGEM, noch die van de Animal Sciences Group. Advisory Committee Prof. dr. R.C. Hoeben (Chairman) Leiden University Medical Centre Dr. D. van Zaane Wageningen University and Research Centre Dr. C. van Maanen Animal Health Service Drs. D. Louz Bureau Genetically Modified Organisms Ing. A.M.P van Beurden Commission on Genetic Modification Recombinant and chimeric viruses 2 INHOUDSOPGAVE RECOMBINANT AND CHIMERIC VIRUSES: EVALUATION OF RISKS ASSOCIATED WITH CHANGES IN TROPISM Executive summary............................................................................................................................... 5 Introduction............................................................................................................................................ 7 1. Genetic modification of viruses .................................................................................................9 -
25 May 7, 2014
Joint Pathology Center Veterinary Pathology Services Wednesday Slide Conference 2013-2014 Conference 25 May 7, 2014 ______________________________________________________________________________ CASE I: 3121206023 (JPC 4035610). Signalment: 5-week-old mixed breed piglet, (Sus domesticus). History: Two piglets from the faculty farm were found dead, and another piglet was weak and ataxic and, therefore, euthanized. Gross Pathology: The submitted piglet was in good body condition. It was icteric and had a diffusely pale liver. Additionally, petechial hemorrhages were found on the kidneys, and some fibrin was present covering the abdominal organs. Laboratory Results: The intestine was PCR positive for porcine circovirus (>9170000). Histopathologic Description: Mesenteric lymph node: Diffusely, there is severe lymphoid depletion with scattered karyorrhectic debris (necrosis). Also scattered throughout the section are large numbers of macrophages and eosinophils. The macrophages often contain botryoid basophilic glassy intracytoplasmic inclusion bodies. In fewer macrophages, intranuclear basophilic inclusions can be found. Liver: There is massive loss of hepatocytes, leaving disrupted liver lobules and dilated sinusoids engorged with erythrocytes. The remaining hepatocytes show severe swelling, with micro- and macrovesiculation of the cytoplasm and karyomegaly. Some swollen hepatocytes have basophilic intranuclear, irregular inclusions (degeneration). Throughout all parts of the liver there are scattered moderate to large numbers of macrophages (without inclusions). Within portal areas there is multifocally mild to moderate fibrosis and bile duct hyperplasia. Some bile duct epithelial cells show degeneration and necrosis, and there is infiltration of neutrophils within the lumen. The limiting plate is often obscured mainly by infiltrating macrophages and eosinophils, and fewer neutrophils, extending into the adjacent parenchyma. Scattered are small areas with extra medullary hematopoiesis. -
Understanding Human Astrovirus from Pathogenesis to Treatment
University of Tennessee Health Science Center UTHSC Digital Commons Theses and Dissertations (ETD) College of Graduate Health Sciences 6-2020 Understanding Human Astrovirus from Pathogenesis to Treatment Virginia Hargest University of Tennessee Health Science Center Follow this and additional works at: https://dc.uthsc.edu/dissertations Part of the Diseases Commons, Medical Sciences Commons, and the Viruses Commons Recommended Citation Hargest, Virginia (0000-0003-3883-1232), "Understanding Human Astrovirus from Pathogenesis to Treatment" (2020). Theses and Dissertations (ETD). Paper 523. http://dx.doi.org/10.21007/ etd.cghs.2020.0507. This Dissertation is brought to you for free and open access by the College of Graduate Health Sciences at UTHSC Digital Commons. It has been accepted for inclusion in Theses and Dissertations (ETD) by an authorized administrator of UTHSC Digital Commons. For more information, please contact [email protected]. Understanding Human Astrovirus from Pathogenesis to Treatment Abstract While human astroviruses (HAstV) were discovered nearly 45 years ago, these small positive-sense RNA viruses remain critically understudied. These studies provide fundamental new research on astrovirus pathogenesis and disruption of the gut epithelium by induction of epithelial-mesenchymal transition (EMT) following astrovirus infection. Here we characterize HAstV-induced EMT as an upregulation of SNAI1 and VIM with a down regulation of CDH1 and OCLN, loss of cell-cell junctions most notably at 18 hours post-infection (hpi), and loss of cellular polarity by 24 hpi. While active transforming growth factor- (TGF-) increases during HAstV infection, inhibition of TGF- signaling does not hinder EMT induction. However, HAstV-induced EMT does require active viral replication. -
Reflection Paper Quality, Non-Clinical and Clinical Issues
European Medicines Agency 1 London, 19 March 2009 2 EMEA/CHMP/GTWP/587488/2007 3 4 COMMITTEE FOR MEDICINAL PRODUCTS FOR HUMAN USE 5 (CHMP) 6 REFLECTION PAPER 7 QUALITY, NON-CLINICAL AND CLINICAL ISSUES RELATING SPECIFICALLY TO 8 RECOMBINANT ADENO-ASSOCIATED VIRAL VECTORS 9 DRAFT AGREED BY GENE THERAPY WORKING PARTY (GTWP) January 2009 PRESENTATION TO THE COMMITTEE FOR ADVANCED February 2009 THERAPIES (CAT) AND CHMP ADOPTION BY CHMP FOR RELEASE FOR CONSULTATION March 2009 END OF CONSULTATION (DEADLINE FOR COMMENTS) September 2009 10 Comments should be provided electronically in word format using this template to [email protected] 11 12 KEYWORDS Adeno-associated virus, self complementary adeno-associated virus, recombinant adeno-associated virus, production systems, quality, non-clinical, clinical, follow-up, tissue tropism, germ-line transmission, environmental risk, immunogenicity, biodistribution, shedding, animal models, persistence, reactivation. 13 7 Westferry Circus, Canary Wharf, London, E14 4HB, UK Tel. (44-20) 7418 8400 Fax (44-20) 7418 8613 E-mail: [email protected] http://www.emea.europa.eu ©EMEA 2009 Reproduction and/or distribution of this document is authorised for non commercial purposes only provided the EMEA is acknowledged 14 15 REFLECTION PAPER ON QUALITY, NON-CLINICAL AND CLINICAL ISSUES 16 RELATING SPECIFICALLY TO RECOMBINANT ADENO-ASSOCIATED VIRAL 17 VECTORS 18 19 TABLE OF CONTENTS 20 1. INTRODUCTION........................................................................................................................ -
Characteristics and Timing of Initial Virus Shedding in Severe Acute Respiratory Syndrome Coronavirus 2, Utah, USA Nathaniel M
SYNOPSIS Characteristics and Timing of Initial Virus Shedding in Severe Acute Respiratory Syndrome Coronavirus 2, Utah, USA Nathaniel M. Lewis, Lindsey M. Duca, Perrine Marcenac, Elizabeth A. Dietrich, Christopher J. Gregory, Victoria L. Fields, Michelle M. Banks, Jared R. Rispens, Aron Hall, Jennifer L. Harcourt, Azaibi Tamin, Sarah Willardson, Tair Kiphibane, Kimberly Christensen, Angela C. Dunn, Jacqueline E. Tate, Scott Nabity, Almea M. Matanock, Hannah L. Kirking Virus shedding in severe acute respiratory syndrome others has been documented (4–8). In addition, stud- coronavirus 2 (SARS-CoV-2) can occur before onset ies suggest that virus shedding can begin before the of symptoms; less is known about symptom progres- onset of symptoms (7,8) and extend beyond the reso- sion or infectiousness associated with initiation of viral lution of symptoms (9). However, data on the initia- shedding. We investigated household transmission in tion and progression of viral shedding in relation to 5 households with daily specimen collection for 5 con- symptom onset and infectiousness are limited. Inten- secutive days starting a median of 4 days after symptom sive early monitoring of household members through onset in index patients. Seven contacts across 2 house- serial (i.e., daily) collection of a respiratory tract spec- holds implementing no precautionary measures were in- imen for testing by real-time reverse transcription fected. Of these 7, 2 tested positive for SARS-CoV-2 by PCR (rRT-PCR), which could clarify the characteris- reverse transcription PCR on day 3 of 5. Both had mild, nonspecific symptoms for 1–3 days preceding the first tics of initial viral shedding, has rarely been imple- positive test.SARS-CoV-2 was cultured from the fourth- mented, although serial self-collection of nasal and day specimen in 1 patient and from the fourth- and fifth- saliva samples was used in a recent study (10). -
RIVM Reprot 320001001 Effect of Administration Route On
Report 320001001/2008 E.F.A. Brandon | B. Tiesjema | J.C.H. van Eijkeren | H.P.H. Hermsen Effect of administration route on biodistribution and shedding of replication-deficient viral vectors used in gene therapy A literature study RIVM Report 320001001/2008 Effect of administration route on biodistribution and shedding of replication-deficient viral vectors used in gene therapy A literature study E.F.A. Brandon B. Tiesjema J.C.H. van Eijkeren H.P.H. Hermsen Contact: E.F.A. Brandon Centre for Substances and Integrated Risk Assessment [email protected] This investigation has been performed by order and for the account of Office for Genetically Modified Organisms of the National Institute for Public Health and the Environment RIVM, P.O. Box 1, 3720 BA Bilthoven, telephone: +31 – 30 – 274 91 11; telefax: +31 – 30 – 274 29 71 © RIVM 2008 Parts of this publication may be reproduced, provided acknowledgement is given to the 'National Institute for Public Health and the Environment', along with the title and year of publication. 2 RIVM report 320001001 Abstract Effect of administration route on biodistribution and shedding of replication-deficient viral vectors used in gene therapy A literature study In gene therapy, genes (heredity material) are introduced in patients to treat diseases caused by deletions or alterations in genes. With adapted viruses it is possible to direct the gene of interest to a desired place in the body. This modified virus is called a viral vector. The gene of interest can also spread, via the viral vector, to a site outside the patient. -
A Scoping Review of Viral Diseases in African Ungulates
veterinary sciences Review A Scoping Review of Viral Diseases in African Ungulates Hendrik Swanepoel 1,2, Jan Crafford 1 and Melvyn Quan 1,* 1 Vectors and Vector-Borne Diseases Research Programme, Department of Veterinary Tropical Disease, Faculty of Veterinary Science, University of Pretoria, Pretoria 0110, South Africa; [email protected] (H.S.); [email protected] (J.C.) 2 Department of Biomedical Sciences, Institute of Tropical Medicine, 2000 Antwerp, Belgium * Correspondence: [email protected]; Tel.: +27-12-529-8142 Abstract: (1) Background: Viral diseases are important as they can cause significant clinical disease in both wild and domestic animals, as well as in humans. They also make up a large proportion of emerging infectious diseases. (2) Methods: A scoping review of peer-reviewed publications was performed and based on the guidelines set out in the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) extension for scoping reviews. (3) Results: The final set of publications consisted of 145 publications. Thirty-two viruses were identified in the publications and 50 African ungulates were reported/diagnosed with viral infections. Eighteen countries had viruses diagnosed in wild ungulates reported in the literature. (4) Conclusions: A comprehensive review identified several areas where little information was available and recommendations were made. It is recommended that governments and research institutions offer more funding to investigate and report viral diseases of greater clinical and zoonotic significance. A further recommendation is for appropriate One Health approaches to be adopted for investigating, controlling, managing and preventing diseases. Diseases which may threaten the conservation of certain wildlife species also require focused attention. -
Re-Infection and Viral Shedding
// Threat Assessment Brief Reinfection with SARS-CoV-2: considerations for public health response 21 September 2020 Introduction Cases with suspected or possible reinfection with SARS-CoV-2 have been recently reported in different countries [1-4]. In many of these cases, it is uncertain if the individual’s Polymerase Chain Reaction (PCR) test remained positive for a long period of time following the first episode of infection or whether it represents a true reinfection. The aim of this Threat Assessment Brief is to elucidate the characteristics and frequency of confirmed SARS-CoV-2 reinfection in the literature, to summarise the findings about SARS-CoV-2 infection and antibody development, and to consider the following questions: • How can a SARS-CoV-2 reinfection be identified? • How common are SARS-CoV-2 reinfections? • What is known about the role of reinfection in onward transmission? • What do these observations mean for acquired immunity? Finally, options for public health response are proposed. Issues to be considered • Some patients with laboratory-confirmed SARS-CoV-2 infection have been identified to be PCR-positive over prolonged periods of time after infection and clinical recovery [5,6]. • The duration of viral RNA detection (identification of viral RNA through PCR testing in a patient) has been shown to be variable, with the detection of RNA in upper respiratory specimens shown up to 104 days after the onset of symptoms [7-9]. • Of note, patients have also been reported to have intermittent negative PCR tests, especially when the virus concentration in the sampled material becomes low or is around the detection limit of a test [4]. -
Whole-Proteome Phylogeny of Large Dsdna Virus Families by an Alignment-Free Method
Whole-proteome phylogeny of large dsDNA virus families by an alignment-free method Guohong Albert Wua,b, Se-Ran Juna, Gregory E. Simsa,b, and Sung-Hou Kima,b,1 aDepartment of Chemistry, University of California, Berkeley, CA 94720; and bPhysical Biosciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720 Contributed by Sung-Hou Kim, May 15, 2009 (sent for review February 22, 2009) The vast sequence divergence among different virus groups has self-organizing maps (18) have also been used to understand the presented a great challenge to alignment-based sequence com- grouping of viruses. parison among different virus families. Using an alignment-free In the previous alignment-free phylogenomic studies using l-mer comparison method, we construct the whole-proteome phylogeny profiles, 3 important issues were not properly addressed: (i) the for a population of viruses from 11 viral families comprising 142 selection of the feature length, l, appears to be without logical basis; large dsDNA eukaryote viruses. The method is based on the feature (ii) no statistical assessment of the tree branching support was frequency profiles (FFP), where the length of the feature (l-mer) is provided; and (iii) the effect of HGT on phylogenomic relationship selected to be optimal for phylogenomic inference. We observe was not considered. HGT in LDVs has been documented by that (i) the FFP phylogeny segregates the population into clades, alignment-based methods (19–22), but these studies have mostly the membership of each has remarkable agreement with current searched for HGT from host to a single family of viruses, and there classification by the International Committee on the Taxonomy of has not been a study of interviral family HGT among LDVs. -
JOURNAL of VIROLOGY VOLUME 63 * DECEMBER 1989 NUMBER 12 Arnold J
JOURNAL OF VIROLOGY VOLUME 63 * DECEMBER 1989 NUMBER 12 Arnold J. Levine, Editor in Chief Robert A. Lamb Editor (1992) (1994) Northwestern University Princeton University Stephen P. Goff, Editor (1994) Evanston, Ill. Princeton, N.J. Columbia University Michael B. A. Oldstone, Editor (1993) Joan S. Brugge, Editor (1994) New York, N. Y. Scripps Clinic & Research University ofPennsylvania Peter M. Howley, Editor (1993) Foundation Philadelphia, Pa. National Cancer Institute La Jolla, Calif. Bernard N. Fields, Editor (1993) Bethesda, Md. Thomas E. Shenk, Editor (1994) Harvard Medical School Princeton University Boston, Mass. Princeton, N.J. EDITORIAL BOARD Rafi Ahmed (1991) Emanuel A. Faust (1990) Robert A. Lazzarini (1990) William S. Robinson (1989) James Alwine (1991) S. Jane Flint (1990) Jonathan Leis (1991) Bernard Roizman (1991) David Baltimore (1990) William R. Folk (1991) Myron Levine (1991) John K. Rose (1991) Amiya K. Banerjee (1990) Donald Ganem (1991) Arthur D. Levinson (1991) Naomi Rosenberg (1989) Tamar Ben-Porat (1990) Costa Georgopolous (1989) Maxine Linial (1991) Roland R. Rueckert (1991) Kenneth I. Berns (1991) Walter Gerhard (1989) David M. Livingston (1991) Norman P. Salzman (1990) Joseph B. Bolen (1991) Mary-Jane Gething (1990) Douglas R. Lowy (1989) Charles E. Samuel (1989) Michael Botchan (1989) Joseph C. Glorioso (1989) Malcohm Martin (1989) Priscilla A. Schaffer (1990) Thomas J. Braciale (1991) Larry M. Gold (1991) Robert Martin (1990) Sondra Schlesinger (1989) Dalius J. Briedis (1991) Hidesaburo Hanafusa (1989) Warren Masker (1990) Robert J. Schneider (1991) Michael J. Buchmeier (1989) John Hassell (1989) James McDougall (1990) Bart Sefton (1991) Robert Callahan (1991) William S. Hayward (1990) Thomas Merigan (1989) Bert L. -
Influenza Viral Shedding in a Prospective Cohort of HIV-Infected and Uninfected Children and Adults in 2 Provinces of South Africa, 2012–2014
HHS Public Access Author manuscript Author ManuscriptAuthor Manuscript Author J Infect Manuscript Author Dis. Author manuscript; Manuscript Author available in PMC 2019 May 03. Published in final edited form as: J Infect Dis. 2018 September 08; 218(8): 1228–1237. doi:10.1093/infdis/jiy310. Influenza Viral Shedding in a Prospective Cohort of HIV-Infected and Uninfected Children and Adults in 2 Provinces of South Africa, 2012–2014 Claire von Mollendorf1,2, Orienka Hellferscee1,3, Ziyaad Valley-Omar1,6, Florette K. Treurnicht1, Sibongile Walaza1,2, Neil A. Martinson4, Limakatso Lebina4, Katlego Mothlaoleng4, Gethwana Mahlase7, Ebrahim Variava5,8, Adam L. Cohen9,10,a, Marietjie Venter11, Cheryl Cohen1,2, and Stefano Tempia9,10 1Centre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases, National Health Laboratory Service, Johannesburg, University of the Witwatersrand, Johannesburg 2School of Public Health, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg 3School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg 4Perinatal HIV Research Unit, Medical Research Council Soweto Matlosana Collaborating Centre for HIV/AIDS and TB, University of the Witwatersrand, Johannesburg 5School of Clinical Medicine, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg 6Department of Pathology, Division of Medical Virology, University of Cape Town 7Pietermaritzburg Metropolitan, KwaZulu-Natal, Atlanta, Georgia 8Department of Medicine, Klerksdorp Tshepong Hospital, North West Province, Atlanta, Georgia 9Influenza Division, Centers for Disease Control and Prevention, Pretoria, Atlanta, Georgia 10Influenza Division, Centers for Disease Control and Prevention, Atlanta, Georgia 11Department of Medical Virology, University of Pretoria, Pretoria, South Africa Abstract Background—Prolonged shedding of influenza viruses may be associated with increased transmissibility and resistance mutation acquisition due to therapy. -
Sheep and Goats
Sheep Pox and Importance Sheep pox and goat pox are contagious viral diseases of small ruminants. These Goat Pox diseases may be mild in indigenous breeds living in endemic areas, but they are often fatal in newly introduced animals. Economic losses result from decreased milk Capripoxvirus Infections, production, damage to the quality of hides and wool, and other production losses. Sheep Capripox pox and goat pox can limit trade, inhibit the development of intensive livestock production, and prevent new breeds of sheep or goats from being imported into endemic regions. Last Updated: August 2017 Etiology Sheep pox and goat pox result from infection by sheeppox virus (SPPV) or goatpox virus (GTPV), closely related members of the genus Capripoxvirus in the family Poxviridae. SPPV is mainly thought to affect sheep and GTPV primarily to affect goats, but some isolates can cause mild to serious disease in both species. SPPV and GTPV can be distinguished by a few specialized genetic tests. These tests are not widely available, and isolates are typically assigned to SPPV or GTPV based on the animal species affected during an outbreak. However, some studies suggest that this assumption is not always valid. SPPV and GTPV are closely related to lumpy skin disease virus (LSDV), a capripoxvirus that affects cattle. These three viruses cannot be distinguished by many diagnostic tests, including all tests that detect antibodies or viral antigens. Species Affected SPPV and GTPV only appear to affect sheep and goats. It seems plausible that these viruses could cause disease in wild relatives of small ruminants, but there are no reports of any infections in free-living or captive wild species.