Copyedited by: YS MANUSCRIPT CATEGORY: Systematic Biology Syst. Biol. 68(6):876–895, 2019 © The Author(s) 2019. Published by Oxford University Press on behalf of the Society of Systematic Biologists. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. DOI:10.1093/sysbio/syz014 Advance Access publication March 2, 2019 Automated Taxonomic Identification of Insects with Expert-Level Accuracy Using Effective Feature Transfer from Convolutional Networks , , ,∗ , , MIROSLAV VALAN1 2 3 ,KAROLY MAKONYI1 4,ATSUTO MAKI5,DOMINIK VONDRÁCEKˇ 6 7, AND FREDRIK RONQUIST2 1Savantic AB, Rosenlundsgatan 52, 118 63 Stockholm, Sweden; 2Department of Bioinformatics and Genetics, Swedish Museum of Natural History, Frescativagen 40, 114 18 Stockholm, Sweden; 3Department of Zoology, Stockholm University, Universitetsvagen 10, 114 18 Stockholm, Sweden; 4Disciplinary Domain of Science and Technology, Physics, Department of Physics and Astronomy, Nuclear Physics, Uppsala University, 751 20 Uppsala, Sweden; 5School of Electrical Engineering and Computer Science, KTH Royal Institute of Technology, Stockholm, SE-10044 Sweden; 6Department of Zoology, Faculty of Science, Charles University in Prague, Viniˇcná 7, CZ-128 43 Praha 2, Czech Republic; 7Department of Entomology, National Museum, Cirkusová 1740, CZ-193 00 Praha 9 - Horní Poˇcernice, Czech Republic ∗ Correspondence to be sent to: Department of Bioinformatics and Genetics, Swedish Museum of Natural History, Frescativagen 40, 114 18 Stockholm, Sweden E-mail:
[email protected]. Received 21 February 2018; reviews returned 13 February 2019; accepted 20 February 2019 Associate Editor: Thomas Buckley Abstract.—Rapid and reliable identification of insects is important in many contexts, from the detection of disease vectors and invasive species to the sorting of material from biodiversity inventories.