BRCA1 Induces Antioxidant Gene Expression and Resistance to Oxidative Stress

Total Page:16

File Type:pdf, Size:1020Kb

BRCA1 Induces Antioxidant Gene Expression and Resistance to Oxidative Stress [CANCER RESEARCH 64, 7893–7909, November 1, 2004] BRCA1 Induces Antioxidant Gene Expression and Resistance to Oxidative Stress Insoo Bae,1 Saijun Fan,1 Qinghui Meng,1 Jeong Keun Rih,1 Hee Jong Kim,1 Hyo Jin Kang,1 Jingwen Xu,1 Itzhak D. Goldberg,2 Anil K. Jaiswal,3 and Eliot M. Rosen1 1Department of Oncology, Lombardi Cancer Center, Georgetown University, Washington, DC; 2Department of Radiation Oncology, Long Island Jewish Medical Center, The Long Island Campus for the Albert Einstein College of Medicine, New Hyde Park, New York; and 3Department of Pharmacology, Baylor College of Medicine, Houston, Texas ABSTRACT binding protein), retinoblastoma 1, retinoblastoma 1-associated pro- teins (RbAp46/48), and several histone deaceylases (HDAC-1/2)], Mutations of the breast cancer susceptibility gene 1 (BRCA1), a tumor and/or sequence-specific DNA-binding transcription factors (e.g., suppressor, confer an increased risk for breast, ovarian, and prostate p53, c-Myc, estrogen receptor, and other proteins; refs. 7–12). cancers. To investigate the function of the BRCA1 gene, we performed DNA microarray and confirmatory reverse transcription-PCR analyses to Some of the functions of BRCA1 cited above may be due, in part, identify BRCA1-regulated gene expression changes. We found that to regulation of specific transcriptional pathways by BRCA1, but the BRCA1 up-regulates the expression of multiple genes involved in the linkage of these functions to BRCA1-regulated transcription is not cytoprotective antioxidant response, including glutathione S-transferases, well understood. We used cell culture models of BRCA1 overexpres- oxidoreductases, and other antioxidant genes. Consistent with these find- sion, underexpression, and mutational inactivation to identify patterns ings, BRCA1 overexpression conferred resistance while BRCA1 deficiency of BRCA1-regulated gene expression. The identification of antioxi- conferred sensitivity to several different oxidizing agents (hydrogen per- dant genes as transcriptional targets of BRCA1 led to the findings that oxide and paraquat). In addition, in the setting of oxidative stress (due to BRCA1 regulates the activity of the antioxidant response transcription hydrogen peroxide), BRCA1 shifted the cellular redox balance to a higher factor nuclear factor erythroid-derived 2 like 2 [also called NRF2 ratio of reduced to oxidized glutathione. Finally, BRCA1 stimulated an- (NFE2L2)] and protects cells against oxidative stress. tioxidant response element-driven transcriptional activity and enhanced the activity of the antioxidant response transcription factor nuclear factor erythroid-derived 2 like 2 [also called NRF2 (NFE2L2)]. The ability of BRCA1 to stimulate antioxidant response element-dependent transcrip- MATERIALS AND METHODS tion and to protect cells against oxidative stress was attenuated by inhi- Cell Lines and Culture bition of nuclear factor erythroid-derived 2 like 2. These findings suggest a novel function for BRCA1, i.e., to protect cells against oxidative stress. Human prostate (DU-145, LNCaP) and breast (MCF-7, T47D) cancer cell This function would be consistent with the postulated role of BRCA1 as a lines were obtained from the American Type Culture Collection (Manassas, caretaker gene in preserving genomic integrity. VA) and cultured as described before (12, 13). The stable wild-type BRCA1 (wtBRCA1) and control (Neo) DU-145 cell clones were isolated and charac- INTRODUCTION terized earlier (14, 15). A mouse embryonic fibroblast (MEF) cell line ho- mozygous for a deletion of Brca1 exon 11 and the control wild-type Inherited mutations of the breast cancer susceptibility gene breast (Brca1ϩ/ϩ) MEFs (16) were provided by Dr. Chuxia Deng (National Institutes cancer susceptibility gene 1 (BRCA1) confer an increased risk for of Diabetes, Digestive and Kidney Diseases, Bethesda, MD). All of the above breast, ovarian, and prostate cancers (1, 2). In addition, BRCA1 cell types were grown in DMEM supplemented with 5% (DU-145) or 10% (all expression is often decreased or absent in sporadic breast and ovarian other cell types) v/v fetal calf serum, L-glutamine (5 mmol/L), nonessential amino acids (5 mmol/L), penicillin (100 units/mL), and streptomycin (100 cancers due, in part, to promoter methylation or other causes, sug- ␮g/mL; all obtained from BioWhittaker, Walkersville, MD). gesting a role for BRCA1 in nonhereditary tumors (3, 4). The specific EBV-immortalized peripheral blood lymphocyte cell lines R794 and R1041 functions of the BRCA1 gene that contribute to tumor suppression are were derived from a female BRCA1 (185delAG) and BRCA2 (6174delT) unclear. However, established functional roles for BRCA1 include the mutation carrier, respectively. These lymphoblastoid cell lines were provided regulation of cell cycle progression, DNA damage signaling and by the Tissue Culture Shared Resource of the Lombardi Comprehensive repair, maintenance of genomic integrity, and the regulation of vari- Cancer Center. The genotypes of the cells were confirmed by the Familial ous transcriptional pathways [reviewed by Rosen et al. (5)]. Cancer Registry of the Lombardi Comprehensive Cancer Center. A role for BRCA1 in transcriptional regulation was first suggested by the finding that BRCA1 has a conserved acidic COOH-terminal BRCA1 Expression Vectors and Transfections transcriptional activation domain (6). Although BRCA1 is not known For transient expression experiments, cells were transfected with a wild- to bind to specific DNA sequences, it may regulate transcription type BRCA1 expression vector (wtBRCA1) consisting of the full-length through protein:protein interactions with components of the basal BRCA1 cDNA within the pcDNA3 mammalian expression vector (Invitrogen, transcription factor (e.g., RNA helicase A and RNA pol II), transcrip- Carlsbad, CA) or within the pCMV-Tag2B vector (Stratagene, La Jolla, CA), tional coactivators and corepressors [e.g., p300 and its functional which allows expression of the full-length protein containing a NH2-terminal homologue CBP (the cAMP-responsive element binding protein- FLAG epitope tag. Both the untagged and the FLAG-tagged proteins are expressed well and exhibit identical biological activities (13). Methodologies used for transient transfections have been reported previously (13, 15) and are Received 4/6/04; revised 7/16/04; accepted 8/16/04. Grant support: USPHS Grants R01-CA80000, R01-CA82599, and R01-ES09169, also briefly described below. Susan G. Komen Breast Cancer Foundation Grant BCTR0201295 (E. Rosen) and United States Army Idea Award DAMD17-02-1-0525 (I. Bae). Small Interfering (si) RNAs The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with The BRCA1 and control (scrambled-sequence) siRNAs were described earlier 18 U.S.C. Section 1734 solely to indicate this fact. Note: Supplementary data for this article can be found at Cancer Research Online (15). All siRNAs were chemically synthesized by Dharmacon, Inc. (Lafayette, (http://cancerres.aacrjournals.org). CO). For siRNA treatments, subconfluent proliferating cells were treated with Requests for reprints: Eliot M. Rosen, Department of Oncology, Lombardi Cancer each siRNA (50 nmol/L), with siPORT Amine reagent (Ambion, Austin, TX). The Center, Georgetown University, 3970 Reservoir Road, NW, Box 571469, Washington, cells were incubated with siRNA for 72 hours (to reduce BRCA1 protein levels to DC 20057-1469. Phone: (202) 687-7695; Fax: (202) 687-7256; E-mail: emr36@ Ͻ georgetown.edu. 25% of control) before the start of the experiment. The control siRNA has no ©2004 American Association for Cancer Research. effect on BRCA1 levels (15), and neither siRNA is toxic to the cells under these 7893 Downloaded from cancerres.aacrjournals.org on September 29, 2021. © 2004 American Association for Cancer Research. BRCA1, GENE EXPRESSION, AND OXIDATIVE STRESS Table 1 PCR primers and expected product sizes for semi-quantitative reverse transcription-PCR analyses Gene name Symbol Primer sequences (5Ј33Ј) Genbank accession no. Product size (bp) Breast cancer susceptibility gene 1 BRCA1 F: ttgcgggaggaaaatgggtagtta U14680 292 B: tgtgccaagggtgaatgatgaaag Annexin 1 ANX1 F: agtcatccaaggtggtcccgg NM_000700 539 B: ggccctggcatctgaatcagcc Mesoderm specific transcript homologue MEST F: actatttcctaaaatcacaggacattaagg NM_002402 411 B: atcacttaataatcctgctttgactaagac Microphthalmia-associated transcription factor MITF F: ctaacctgtacaacaactctcgatctc XM_010977 486 B: atcacttaataatcctgctttgactaagac Microsomal GST1 MGSTI F: aaaagaccacgagctcagga AY368173 346 B: 5 aaagacctgacccaaaacЈ Cardiac ankyrin repeat protein CARP F: gtgttgtgaagatgtacctaatgaagtt XM_051726 297 B: taatcagccctctcttaaaaactcttac Coch-5B2 COCH1 F: aaagcagatgtcctctgcccaggggg XM_007471 300 B: tttcctgtattggaattaccccctctg Brain-derived neutrophic factor BDNF F: gattcataaggatagacacttcttgtg XM_006027 287 B: aaggaatgtaatgcagactttttaagtt G0-S transition 2 G0S2 F: gctgttttttatttggacttaacttcagag M72885 531 B: ccttttgatgttaaaatgctaaatctcacg Tumor necrosis factor ␣ TNFA F: tacagatgaatgtatttatttgggagac M10988 198 B: atcagcattgtttagacaacttaatcag Prostacyclin-stimulating factor F: gtatctcctctaagtaaggaagatgctg S75725 299 B: tgtgatctttattttgtatttctctgtg Expressed sequence tags, weakly similar to TAL-6 F: ttcttctggtactggagaataataacaac R16604 249 B: aatcccataagcctagaatctgtaaggaaac Ceruloplasmin CP F: tatagttctgatgtctttgacattttcc XM_011006 293 B: atgcttccagtcttcttttaatgtttat Tumor necrosis
Recommended publications
  • METABOLIC EVOLUTION in GALDIERIA SULPHURARIA By
    METABOLIC EVOLUTION IN GALDIERIA SULPHURARIA By CHAD M. TERNES Bachelor of Science in Botany Oklahoma State University Stillwater, Oklahoma 2009 Submitted to the Faculty of the Graduate College of the Oklahoma State University in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY May, 2015 METABOLIC EVOLUTION IN GALDIERIA SUPHURARIA Dissertation Approved: Dr. Gerald Schoenknecht Dissertation Adviser Dr. David Meinke Dr. Andrew Doust Dr. Patricia Canaan ii Name: CHAD M. TERNES Date of Degree: MAY, 2015 Title of Study: METABOLIC EVOLUTION IN GALDIERIA SULPHURARIA Major Field: PLANT SCIENCE Abstract: The thermoacidophilic, unicellular, red alga Galdieria sulphuraria possesses characteristics, including salt and heavy metal tolerance, unsurpassed by any other alga. Like most plastid bearing eukaryotes, G. sulphuraria can grow photoautotrophically. Additionally, it can also grow solely as a heterotroph, which results in the cessation of photosynthetic pigment biosynthesis. The ability to grow heterotrophically is likely correlated with G. sulphuraria ’s broad capacity for carbon metabolism, which rivals that of fungi. Annotation of the metabolic pathways encoded by the genome of G. sulphuraria revealed several pathways that are uncharacteristic for plants and algae, even red algae. Phylogenetic analyses of the enzymes underlying the metabolic pathways suggest multiple instances of horizontal gene transfer, in addition to endosymbiotic gene transfer and conservation through ancestry. Although some metabolic pathways as a whole appear to be retained through ancestry, genes encoding individual enzymes within a pathway were substituted by genes that were acquired horizontally from other domains of life. Thus, metabolic pathways in G. sulphuraria appear to be composed of a ‘metabolic patchwork’, underscored by a mosaic of genes resulting from multiple evolutionary processes.
    [Show full text]
  • Table 2. Significant
    Table 2. Significant (Q < 0.05 and |d | > 0.5) transcripts from the meta-analysis Gene Chr Mb Gene Name Affy ProbeSet cDNA_IDs d HAP/LAP d HAP/LAP d d IS Average d Ztest P values Q-value Symbol ID (study #5) 1 2 STS B2m 2 122 beta-2 microglobulin 1452428_a_at AI848245 1.75334941 4 3.2 4 3.2316485 1.07398E-09 5.69E-08 Man2b1 8 84.4 mannosidase 2, alpha B1 1416340_a_at H4049B01 3.75722111 3.87309653 2.1 1.6 2.84852656 5.32443E-07 1.58E-05 1110032A03Rik 9 50.9 RIKEN cDNA 1110032A03 gene 1417211_a_at H4035E05 4 1.66015788 4 1.7 2.82772795 2.94266E-05 0.000527 NA 9 48.5 --- 1456111_at 3.43701477 1.85785922 4 2 2.8237185 9.97969E-08 3.48E-06 Scn4b 9 45.3 Sodium channel, type IV, beta 1434008_at AI844796 3.79536664 1.63774235 3.3 2.3 2.75319499 1.48057E-08 6.21E-07 polypeptide Gadd45gip1 8 84.1 RIKEN cDNA 2310040G17 gene 1417619_at 4 3.38875643 1.4 2 2.69163229 8.84279E-06 0.0001904 BC056474 15 12.1 Mus musculus cDNA clone 1424117_at H3030A06 3.95752801 2.42838452 1.9 2.2 2.62132809 1.3344E-08 5.66E-07 MGC:67360 IMAGE:6823629, complete cds NA 4 153 guanine nucleotide binding protein, 1454696_at -3.46081884 -4 -1.3 -1.6 -2.6026947 8.58458E-05 0.0012617 beta 1 Gnb1 4 153 guanine nucleotide binding protein, 1417432_a_at H3094D02 -3.13334396 -4 -1.6 -1.7 -2.5946297 1.04542E-05 0.0002202 beta 1 Gadd45gip1 8 84.1 RAD23a homolog (S.
    [Show full text]
  • Upregulated Kynurenine Pathway Enzymes in Aortic Atherosclerotic Aneurysm: Macrophage Kynureninase Downregulates Inflammation
    The official journal of the Japan Atherosclerosis Society and the Asian Pacific Society of Atherosclerosis and Vascular Diseases Original Article J Atheroscler Thromb, 2021; 28: 000-000. http://doi.org/10.5551/jat.58248 Upregulated Kynurenine Pathway Enzymes in Aortic Atherosclerotic Aneurysm: Macrophage Kynureninase Downregulates Inflammation Masanori Nishimura1, 2, Atsushi Yamashita2, Yunosuke Matsuura3, Junichi Okutsu4, Aiko Fukahori4, Tsuyoshi Hirata4, Tomohiro Nishizawa5, Hirohito Ishii1, Kazunari Maekawa2, Eriko Nakamura2, Kazuo Kitamura3, Kunihide Nakamura1 and Yujiro Asada2 1Division of Cardiovascular Surgery, Department of Surgery, Faculty of Medicine, University of Miyazaki, Miyazaki, Japan 2Department of Pathology, Faculty of Medicine, University of Miyazaki, Miyazaki, Japan 3Department of Internal Medicine, Faculty of Medicine, University of Miyazaki, Miyazaki, Japan 4Translational Research Department, Daiichi Sankyo RD Novare Co., Ltd., Tokyo, Japan 5Specialty Medicine Research Laboratories I, Daiichi Sankyo Co., Ltd., Tokyo, Japan Aims: Inflammation and hypertension contribute to the progression of atherosclerotic aneurysm in the aorta. Vascular cell metabolism is regarded to modulate atherogenesis, but the metabolic alterations that occur in ath- erosclerotic aneurysm remain unknown. The present study aimed to identify metabolic pathways and metabo- lites in aneurysmal walls and examine their roles in atherogenesis. Methods: Gene expression using microarray and metabolite levels in the early atherosclerotic lesions and aneu- rysmal walls obtained from 42 patients undergoing aortic surgery were investigated (early lesion n=11, aneu- rysm n=35) and capillary electrophoresis–time-of-flight mass spectrometry (early lesion n=14, aneurysm n=38). Using immunohistochemistry, the protein expression and localization of the identified factors were examined (early lesion n=11, non-aneurysmal advanced lesion n=8, aneurysm n=11).
    [Show full text]
  • BRCA1 in Hormonal Carcinogenesis: Basic and Clinical Research
    Endocrine-Related Cancer (2005) 12 533–548 REVIEW BRCA1 in hormonal carcinogenesis: basic and clinical research E M Rosen, S Fan and C Isaacs Department of Oncology, Lombardi Cancer Center, Georgetown University, 3970 Reservoir Road, NW, Washington, District of Columbia 20057, USA (Requests for offprints should be addressed to E M Rosen; Email: [email protected]) Abstract The breast and ovarian cancer susceptibility gene-1 (BRCA1) located on chromosome 17q21 encodes a tumor suppressor gene that functions, in part, as a caretaker gene in preserving chromosomal stability. The observation that most BRCA1 mutant breast cancers are hormone receptor negative has led some to question whether hormonal factors contribute to the etiology of BRCA1-mutant breast cancers. Nevertheless, the caretaker function of BRCA1 is a generic one and does not explain why BRCA1 mutations confer a specific risk for tumor types that are hormone- responsive or that hormonal factors contribute to the etiology, including those of the breast, uterus, cervix, and prostate. An accumulating body of research indicates that in addition to its well- established roles in regulation of the DNA damage response, the BRCA1 protein interacts with steroid hormone receptors (estrogen receptor (ER-a) and androgen receptor (AR)) and regulates their activity, inhibiting ER-a activity and stimulating AR activity. The ability of BRCA1 to regulate steroid hormone action is consistent with clinical-epidemiological research suggesting that: (i) hormonal factors contribute to breast cancer risk in BRCA1 mutation carriers; and (ii) the spectrum of risk-modifying effects of hormonal factors in BRCA1 carriers is not identical to that observed in the general population.
    [Show full text]
  • HIV-1 Envelope Mimicry of Host Enzyme Kynureninase Does Not Disrupt Tryptophan Metabolism
    HIV-1 Envelope Mimicry of Host Enzyme Kynureninase Does Not Disrupt Tryptophan Metabolism This information is current as Todd Bradley, Guang Yang, Olga Ilkayeva, T. Matt Holl, of September 29, 2021. Ruijun Zhang, Jinsong Zhang, Sampa Santra, Christopher B. Fox, Steve G. Reed, Robert Parks, Cindy M. Bowman, Hilary Bouton-Verville, Laura L. Sutherland, Richard M. Scearce, Nathan Vandergrift, Thomas B. Kepler, M. Anthony Moody, Hua-Xin Liao, S. Munir Alam, Roger McLendon, Jeffrey I. Everitt, Christopher B. Newgard, Downloaded from Laurent Verkoczy, Garnett Kelsoe and Barton F. Haynes J Immunol 2016; 197:4663-4673; Prepublished online 14 November 2016; doi: 10.4049/jimmunol.1601484 http://www.jimmunol.org/content/197/12/4663 http://www.jimmunol.org/ Supplementary http://www.jimmunol.org/content/suppl/2016/11/12/jimmunol.160148 Material 4.DCSupplemental References This article cites 67 articles, 31 of which you can access for free at: http://www.jimmunol.org/content/197/12/4663.full#ref-list-1 by guest on September 29, 2021 Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2016 by The American Association of Immunologists, Inc.
    [Show full text]
  • Supplementary Materials
    Supplementary Materials COMPARATIVE ANALYSIS OF THE TRANSCRIPTOME, PROTEOME AND miRNA PROFILE OF KUPFFER CELLS AND MONOCYTES Andrey Elchaninov1,3*, Anastasiya Lokhonina1,3, Maria Nikitina2, Polina Vishnyakova1,3, Andrey Makarov1, Irina Arutyunyan1, Anastasiya Poltavets1, Evgeniya Kananykhina2, Sergey Kovalchuk4, Evgeny Karpulevich5,6, Galina Bolshakova2, Gennady Sukhikh1, Timur Fatkhudinov2,3 1 Laboratory of Regenerative Medicine, National Medical Research Center for Obstetrics, Gynecology and Perinatology Named after Academician V.I. Kulakov of Ministry of Healthcare of Russian Federation, Moscow, Russia 2 Laboratory of Growth and Development, Scientific Research Institute of Human Morphology, Moscow, Russia 3 Histology Department, Medical Institute, Peoples' Friendship University of Russia, Moscow, Russia 4 Laboratory of Bioinformatic methods for Combinatorial Chemistry and Biology, Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, Moscow, Russia 5 Information Systems Department, Ivannikov Institute for System Programming of the Russian Academy of Sciences, Moscow, Russia 6 Genome Engineering Laboratory, Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region, Russia Figure S1. Flow cytometry analysis of unsorted blood sample. Representative forward, side scattering and histogram are shown. The proportions of negative cells were determined in relation to the isotype controls. The percentages of positive cells are indicated. The blue curve corresponds to the isotype control. Figure S2. Flow cytometry analysis of unsorted liver stromal cells. Representative forward, side scattering and histogram are shown. The proportions of negative cells were determined in relation to the isotype controls. The percentages of positive cells are indicated. The blue curve corresponds to the isotype control. Figure S3. MiRNAs expression analysis in monocytes and Kupffer cells. Full-length of heatmaps are presented.
    [Show full text]
  • BIOCHEMISTRY of TRYPTOPHAN in HEALTH and DISEASE Contents
    Molec. Aspects Med. Vol. 6, pp. 101-197, 1982 0098-2997/82/020101-97548.50/0 Printed in Great Britain. All rights reserved. Copyright © Pergamon Press Ltd. BIOCHEMISTRY OF TRYPTOPHAN IN HEALTH AND DISEASE David A. Bender Courtauld Institute of Biochemistry, The Middlesex Hospital Medical School, London WIP 7PN, U.K. Contents Chapter 1 THE DISCOVERY OF TRYPTOPHAN, ITS PHYSIOLOGICAL SIGNIFICANCE AND METABOLIC FATES 103 Tryptophan and glucose metabolism 105 Xanthurenic acid and insulin 105 The glucose tolerance factor 106 Inhibition of gluconeogenesis by tryptophan metabolites i07 Metabolic fates of tryptophan 108 Protein synthesis 108 Oxidative metabolism Ii0 5-Hydroxyindole synthesis 111 Intestinal bacterial metabolism iii Chapter 2 THE 5-HYDROXYINDOLE PATHWAY OF TRYPTOPHAN METABOLISM; SEROTONIN AND OTHER CENTRALLY ACTIVE TRYPTOPHAN METABOLITES 112 Tryptophan 5-hydroxylase 112 Inhibition of tryptophan hydroxylase and the carcinoid syndrome 116 Aromatic amino acid decarboxylase 118 The specificity of aromatic amino acid decarboxylase 120 Tryptophan metabolism in the pineal gland 121 Monoamine oxidase 124 The uptake of tryptophan into the brain 124 The binding of tryptophan to serum albumin 127 Competition for uptake by other neutral amino acids 129 Changes in tryptophan metabolism in response to food intake 129 Tryptophan uptake into the brain in liver failure 131 Sleep and tryptophan metabolism 134 101 102 D.A. Bender Tryptophan and serotonin in psychiatric disorders 135 Affective disorders 136 Evidence for a deficit of serotonin or tryptophan
    [Show full text]
  • Supplementary Table S4. FGA Co-Expressed Gene List in LUAD
    Supplementary Table S4. FGA co-expressed gene list in LUAD tumors Symbol R Locus Description FGG 0.919 4q28 fibrinogen gamma chain FGL1 0.635 8p22 fibrinogen-like 1 SLC7A2 0.536 8p22 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 DUSP4 0.521 8p12-p11 dual specificity phosphatase 4 HAL 0.51 12q22-q24.1histidine ammonia-lyase PDE4D 0.499 5q12 phosphodiesterase 4D, cAMP-specific FURIN 0.497 15q26.1 furin (paired basic amino acid cleaving enzyme) CPS1 0.49 2q35 carbamoyl-phosphate synthase 1, mitochondrial TESC 0.478 12q24.22 tescalcin INHA 0.465 2q35 inhibin, alpha S100P 0.461 4p16 S100 calcium binding protein P VPS37A 0.447 8p22 vacuolar protein sorting 37 homolog A (S. cerevisiae) SLC16A14 0.447 2q36.3 solute carrier family 16, member 14 PPARGC1A 0.443 4p15.1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha SIK1 0.435 21q22.3 salt-inducible kinase 1 IRS2 0.434 13q34 insulin receptor substrate 2 RND1 0.433 12q12 Rho family GTPase 1 HGD 0.433 3q13.33 homogentisate 1,2-dioxygenase PTP4A1 0.432 6q12 protein tyrosine phosphatase type IVA, member 1 C8orf4 0.428 8p11.2 chromosome 8 open reading frame 4 DDC 0.427 7p12.2 dopa decarboxylase (aromatic L-amino acid decarboxylase) TACC2 0.427 10q26 transforming, acidic coiled-coil containing protein 2 MUC13 0.422 3q21.2 mucin 13, cell surface associated C5 0.412 9q33-q34 complement component 5 NR4A2 0.412 2q22-q23 nuclear receptor subfamily 4, group A, member 2 EYS 0.411 6q12 eyes shut homolog (Drosophila) GPX2 0.406 14q24.1 glutathione peroxidase
    [Show full text]
  • Generate Metabolic Map Poster
    Authors: Pallavi Subhraveti Ron Caspi Peter Midford Peter D Karp An online version of this diagram is available at BioCyc.org. Biosynthetic pathways are positioned in the left of the cytoplasm, degradative pathways on the right, and reactions not assigned to any pathway are in the far right of the cytoplasm. Transporters and membrane proteins are shown on the membrane. Ingrid Keseler Periplasmic (where appropriate) and extracellular reactions and proteins may also be shown. Pathways are colored according to their cellular function. Gcf_001591825Cyc: Bacillus vietnamensis NBRC 101237 Cellular Overview Connections between pathways are omitted for legibility. Anamika Kothari sn-glycerol phosphate phosphate pro phosphate phosphate phosphate thiamine molybdate D-xylose D-ribose glutathione 3-phosphate D-mannitol L-cystine L-djenkolate lanthionine α,β-trehalose phosphate phosphate [+ 3 more] α,α-trehalose predicted predicted ABC ABC FliY ThiT XylF RbsB RS10935 UgpC TreP PutP RS10200 PstB PstB RS10385 RS03335 RS20030 RS19075 transporter transporter of molybdate of phosphate α,β-trehalose 6-phosphate L-cystine D-xylose D-ribose sn-glycerol D-mannitol phosphate phosphate thiamine glutathione α α phosphate phosphate phosphate phosphate L-djenkolate 3-phosphate , -trehalose 6-phosphate pro 1-phosphate lanthionine molybdate phosphate [+ 3 more] Metabolic Regulator Amino Acid Degradation Amine and Polyamine Biosynthesis Macromolecule Modification tRNA-uridine 2-thiolation Degradation ATP biosynthesis a mature peptidoglycan a nascent β an N-terminal-
    [Show full text]
  • THE ROLE of KYNURENINE, a TRYPTOPHAN METABOLITE THAT INCREASES with AGE, in MUSCLE ATROPHY and LIPID PEROXIDATION) by Helen Eliz
    THE ROLE OF KYNURENINE, A TRYPTOPHAN METABOLITE THAT INCREASES WITH AGE, IN MUSCLE ATROPHY AND LIPID PEROXIDATION) By Helen Elizabeth Kaiser Submitted to the Faculty of the Graduate School of Augusta University in partial fulfillment of the Requirements of the Degree of (Doctor of Philosophy in Cellular Biology and Anatomy) April 2020 COPYRIGHT© 2020 by Helen Kaiser ACKNOWLEDGEMENTS I wish to express my deepest gratitude to my mentor Dr. Mark Hamrick. His support and advice were invaluable to my learning and development as a scientist. I would like to especially recognize Dr. Hamrick’s honesty to data, and kindness to everyone around him. It was an honor to work as his student, and to be a part of this project. I would like to thank my committee members, Drs. Carlos Isales, Meghan McGee-Lawrence, and Yutao Liu, for their continued support, guidance, and helpful suggestions. They have helped to shape and focus this project, and have augmented my experience as a student during the development of my dissertation. Additionally, I want to recognize and thank Dr. Sadanand Fulzele for sharing his wealth of knowledge in techniques, and always keeping his door open for student’s questions. Next, a most heartfelt thanks to my lab mates: Andrew Khayrullin, Bharati Mendhe, Ling Ruan and Emily Parker. This project has been a team effort, all of them have been fundamental to its success. I further want to show my appreciation for the rest of the department of Cellular Biology and Anatomy at Augusta University. The histology core members Donna Kumiski and Penny Roon for their direct help in sectioning, and contributions to this project.
    [Show full text]
  • Functional Analysis of Novel Β-Catenin Mutants
    AN ABSTRACT OF THE THESIS OF Mohamed B. Al-Fageeh for the degree of Master of Science in Biochemistryand Biophysics presented on February 12, 2003. Title: Functional Analysis of Novel -catenin Mutants Abstract approved Redacted for privacy Roderick H. Dashwood 13-catenin is a multi functional protein that is involved in cell-cell adhesion and cell signaling. In non-stimulated cells,-catenin is tightly down-regulated by GSK-3dependent phosphorylation at Ser and Thr residues, followed by rapid ubiquitination and proteasomal degradation. It is well established that mutations within the regulatory GSK-313 region lead to stabilized13-catenin and constitutive f3-cateninlTCF-dependent gene activation. Furthermore, it has been shown that amino acids adjacent to codon 33, namely 32 and 34 of -catenin,are hotspots for substitution mutations in carcinogen-induced animaltumors. Thus, a major hypothesis of this thesis was that substitution mutations at codon 32 of13-catenin interfere with phosphorylation and ubiquitination of -catenin. Site-directed mutagenesis was used to create defined-catenin mutants, namely D32G, D32N, and D32Y. The signaling potential of various13-catenin was analyzed in a gene reporter assay by co-transfection witha hTcf eDNA with a reporter plasmid containing a Tcf-dependent promoter (TOPFlash). Therewas a significant enhancement of the reportergene activity with all [3-catenin mutants compared to WT t3-catenin after 48 hours of transfection. Protein analysisby Western blotting showed massive accumulation of mutant-catenin. Antibody specific for phosphorylated 13-catenin showed that the accumulated D32G and D32N 13-catenin proteins were strongly phosphorylated bothin vivoandin vitro, whereas D32Y 13-catenin exhibited significantly attenuated phosphorylationin vivo.
    [Show full text]
  • Original Article Gastrointestinal Stem Cells and Cancer
    Stem Cell Reviews Copyright © 2005 Humana Press Inc. All rights of any nature whatsoever are reserved. ISSN 15501550-8943/05/1:1–10/$30.00‐8943 / 05 / 1:233‐241 / $30.00 Original Article Gastrointestinal Stem Cells and Cancer— Bridging the Molecular Gap S.J. Leedham,*,1 A.T.Thliveris,2 R.B. Halberg,2 M.A. Newton,3 and N.A.Wright1 1Histopathology Unit, Cancer Research UK, 44 Lincoln’s Inn Fields, London WC2A 3PX,UK; 2McArdle Laboratory for Cancer Research, University of Wisconsin—Madison,Madison,WI 53706; and 3Department of Statistics, University of Wisconsin—Madison, Madison WI 53706 Abstract Cancer is believed to be a disease involving stem cells. The digestive tract has a very high cancer prevalence partly owing to rapid epithelial cell turnover and exposure to dietary toxins. Work on the hereditary cancer syndromes including famalial adenoma- tous polyposis (FAP) has led to significant advances, including the adenoma-carcinoma sequence. The initial mutation involved in this stepwise progression is in the “gate- keeper” tumor suppressor gene adenomatous polyposis coli (APC). In FAP somatic, second hits in this gene are nonrandom events, selected for by the position of the germ- line mutation. Extensive work in both the mouse and human has shown that crypts are clonal units and mutated stem cells may develop a selective advantage, eventually form- ing a clonal crypt population by a process called “niche succession.” Aberrant crypt foci are then formed by the longitudinal division of crypts into two daughter units—crypt fission. The early growth of adenomas is contentious with two main theories, the “top- down” and “bottom-up” hypotheses, attempting to explain the spread of dysplastic tissue in the bowel.
    [Show full text]