Journal of Veterinary Science & Animal Husbandry Volume 5 | Issue 3 ISSN: 2348-9790 Research Article Open Access
Supplemental Table 1
Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc 0 null Root no rank 100.00 100.00 100.00 100.00 unclassi- -1 Root;rootrank;unclassified_Root;; unclassified_Root 0.05 0.03 0.08 0.08 fied_Root 1 Root;rootrank;Bacteria;domain; Bacteria domain 99.95 99.97 99.91 99.91 1966 Root;rootrank;Archaea;domain; Archaea domain 0.00 0.00 0.00 0.01 Root;rootrank;Archaea;domain;unclassifi unclassified_ -1967 unclassified_Archaea 0.00 0.00 0.00 0.00 ed_Archaea;; Archaea Root;rootrank;Bacteria;domain;unclassifi unclassified_ -2 unclassified_Bacteria 3.15 2.33 5.19 5.34 ed_Bacteria;; Bacteria Root;rootrank;Bacteria;domain;"Bacteroidet 422 Bacteroidetes phylum 40.45 51.86 51.02 45.56 es";phylum; Root;rootrank;Bacteria;domain;Firmicutes; 2259 Firmicutes phylum 40.88 42.95 40.60 48.04 phylum; Root;rootrank;Bacteria;domain;"Proteobacte 841 Proteobacteria phylum 15.18 2.77 2.83 0.86 ria";phylum; Root;rootrank;Bacteria;domain;"Fusobacteri 789 Fusobacteria phylum 0.08 0.00 0.04 0.00 a";phylum; Root;rootrank;Bacteria;domain;"Actinobacte 2 Actinobacteria phylum 0.19 0.04 0.16 0.10 ria";phylum; Root;rootrank;Bacteria;domain;"Tenericutes 1921 Tenericutes phylum 0.01 0.02 0.05 0.01 ";phylum; Root;rootrank;Bacteria;domain;"Spirochaete 1883 Spirochaetes phylum 0.00 0.00 0.00 0.00 s";phylum; Root;rootrank;Bacteria;domain;"Synergistete 1906 Synergistetes phylum 0.01 0.00 0.00 0.00 s";phylum; Root;rootrank;Bacteria;domain;"Deferribacte 746 Deferribacteres phylum 0.00 0.00 0.00 0.00 res";phylum; Root;rootrank;Bacteria;domain;"Verrucomicr 2164 Verrucomicrobia phylum 0.00 0.00 0.00 0.00 obia";phylum; Root;rootrank;Bacteria;domain;"Fibrobacter 784 Fibrobacteres phylum 0.00 0.00 0.00 0.00 es";phylum; Root;rootrank;Bacteria;domain;Cyanobacter Cyanobacteria/Chlo- 2684 phylum 0.00 0.00 0.00 0.00 ia/Chloroplast;phylum; roplast Root;rootrank;Bacteria;domain;"Acidobacter 2195 Acidobacteria phylum 0.00 0.00 0.00 0.00 ia";phylum; Root;rootrank;Bacteria;domain;"Chlamydiae 667 Chlamydiae phylum 0.00 0.00 0.00 0.00 ";phylum; Root;rootrank;Bacteria;domain;"Elusimicrob 779 Elusimicrobia phylum 0.00 0.00 0.00 0.00 ia";phylum; Root;rootrank;Bacteria;domain;"Planctomyce 824 Planctomycetes phylum 0.00 0.00 0.00 0.00 tes";phylum; 2146 Root;rootrank;Bacteria;domain;TM7;phylum; TM7 phylum 0.00 0.00 0.00 0.01 Root;rootrank;Bacteria;domain;"Lentisphaer 809 Lentisphaerae phylum 0.00 0.00 0.00 0.00 ae";phylum; Root;rootrank;Archaea;domain;"Crenarchae 1967 Crenarchaeota phylum 0.00 0.00 0.00 0.01 ota";phylum; Root;rootrank;Archaea;domain;"Euryarchaeo 2010 Euryarchaeota phylum 0.00 0.00 0.00 0.00 ta";phylum; Root;rootrank;Bacteria;domain;"Bacteroidetes unclassified_ "Bacteroi- phylum- -423 3.05 2.96 3.29 2.91 ";phylum;unclassified_"Bacteroidetes";; detes" unclassified
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Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc Root;rootrank;Bacteria;domain;Firmicutes;ph phylum- -2260 unclassified_Firmicutes 1.34 1.39 1.83 2.92 ylum;unclassified_Firmicutes;; unclassified Root;rootrank;Bacteria;domain;"Proteobacteri unclassified_ "Proteo- phylum- -842 0.27 0.04 0.12 0.07 a";phylum;unclassified_"Proteobacteria";; bacteria" unclassified Root;rootrank;Bacteria;domain;"Acidobacteri unclassified_ "Acido- phylum- -2196 0.00 0.00 0.00 0.00 a";phylum;unclassified_"Acidobacteria";; bacteria" unclassified Root;rootrank;Bacteria;domain;"Verrucomi unclassified_ "Verru- phylum- -2165 crobia";phylum;unclassified_"Verrucomicro 0.00 0.00 0.00 0.00 comicrobia" unclassified bia";; Root;rootrank;Bacteria;domain;Cyanobacte unclassified_Cyanobac- phylum- -2685 ria/Chloroplast;phylum;unclassified_Cyano- 0.00 0.00 0.00 0.00 teria/Chlorop unclassified bacteria/Chlo Root;rootrank;Bacteria;domain;"Bacteroidetes 423 Bacteroidia class 37.34 48.86 47.66 42.54 ";phylum;"Bacteroidia";class; Root;rootrank;Bacteria;domain;"Bacteroidetes 565 Sphingobacteria class 0.05 0.05 0.07 0.09 ";phylum;"Sphingobacteria";class; Root;rootrank;Bacteria;domain;"Bacteroidetes 458 Flavobacteria class 0.00 0.00 0.01 0.01 ";phylum;Flavobacteria;class; Root;rootrank;Bacteria;domain;"Bacteroidetes Bacteroidetes_incer- 657 class 0.00 0.00 0.00 0.00 ";phylum;"Bacteroidetes"_incertae_sedis;class; tae_sedis Root;rootrank;Bacteria;domain;Firmicutes;ph 2722 Negativicutes class 15.03 10.45 1.56 1.41 ylum;Negativicutes;class; Root;rootrank;Bacteria;domain;Firmicutes;ph 2558 Erysipelotrichia class 3.15 3.54 0.81 1.47 ylum;Erysipelotrichia;class; Root;rootrank;Bacteria;domain;Firmicutes;ph 2375 Clostridia class 20.28 24.55 25.70 28.30 ylum;Clostridia;class; Root;rootrank;Bacteria;domain;Firmicutes;ph 2260 Bacilli class 1.07 3.03 10.72 13.95 ylum;Bacilli;class; Root;rootrank;Bacteria;domain;"Proteobacteri 1501 Gammaproteobacteria class 12.27 0.07 1.42 0.09 a";phylum;Gammaproteobacteria;class; Root;rootrank;Bacteria;domain;"Proteobacteri 842 Alphaproteobacteria class 0.81 0.84 1.04 0.64 a";phylum;Alphaproteobacteria;class; Root;rootrank;Bacteria;domain;"Proteobacteri 1175 Betaproteobacteria class 1.77 1.82 0.19 0.04 a";phylum;Betaproteobacteria;class; Root;rootrank;Bacteria;domain;"Proteobacteri 1477 Epsilonproteobacteria class 0.05 0.01 0.06 0.01 a";phylum;Epsilonproteobacteria;class; Root;rootrank;Bacteria;domain;"Proteobacteri 1352 Deltaproteobacteria class 0.00 0.00 0.00 0.01 a";phylum;Deltaproteobacteria;class; Root;rootrank;Bacteria;domain;"Fusobacteria 790 Fusobacteria class 0.08 0.00 0.04 0.00 ";phylum;"Fusobacteria";class; Root;rootrank;Bacteria;domain;"Actinobacter 3 Actinobacteria class 0.19 0.04 0.16 0.10 ia";phylum;Actinobacteria;class; Root;rootrank;Bacteria;domain;"Tenericutes"; 1922 Mollicutes class 0.01 0.02 0.05 0.01 phylum;Mollicutes;class; Root;rootrank;Bacteria;domain;"Spirochaetes" 1884 Spirochaetes class 0.00 0.00 0.00 0.00 ;phylum;Spirochaetes;class; Root;rootrank;Bacteria;domain;"Synergistetes 1907 Synergistia class 0.01 0.00 0.00 0.00 ";phylum;Synergistia;class; Root;rootrank;Bacteria;domain;"Deferribacter 747 Deferribacteres class 0.00 0.00 0.00 0.00 es";phylum;Deferribacteres;class; Root;rootrank;Bacteria;domain;"Verrucomicr 2181 Subdivision5 class 0.00 0.00 0.00 0.00 obia";phylum;Subdivision5;class; Root;rootrank;Bacteria;domain;"Fibrobacteres 785 Fibrobacteria class 0.00 0.00 0.00 0.00 ";phylum;"Fibrobacteria";class; Root;rootrank;Bacteria;domain;Cyanobacter 2685 Cyanobacteria class 0.00 0.00 0.00 0.00 ia/Chloroplast;phylum;Cyanobacteria;class; Root;rootrank;Bacteria;domain;Cyanobacter 2713 Chloroplast class 0.00 0.00 0.00 0.00 ia/Chloroplast;phylum;Chloroplast;class;
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Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc Root;rootrank;Bacteria;domain;"Acidobacteri 2240 Acidobacteria_Gp21 class 0.00 0.00 0.00 0.00 a";phylum;Acidobacteria_Gp21;class; Root;rootrank;Bacteria;domain;"Acidobacteri 2212 Acidobacteria_Gp5 class 0.00 0.00 0.00 0.00 a";phylum;Acidobacteria_Gp5;class; Root;rootrank;Bacteria;domain;"Chlamydiae"; 668 Chlamydiae class 0.00 0.00 0.00 0.00 phylum;Chlamydiae;class; Root;rootrank;Bacteria;domain;"Elusimicrobi 780 Elusimicrobia class 0.00 0.00 0.00 0.00 a";phylum;Elusimicrobia;class; Root;rootrank;Bacteria;domain;"Planctomycet 825 Planctomycetacia class 0.00 0.00 0.00 0.00 es";phylum;"Planctomycetacia";class; Root;rootrank;Bacteria;domain;"Lentisphaera 810 Lentisphaeria class 0.00 0.00 0.00 0.00 e";phylum;"Lentisphaeria";class; Root;rootrank;Archaea;domain;"Crenarchaeo 1968 Thermoprotei class 0.00 0.00 0.00 0.01 ta";phylum;Thermoprotei;class; Root;rootrank;Archaea;domain;"Euryarchaeot 2055 Methanobacteria class 0.00 0.00 0.00 0.00 a";phylum;Methanobacteria;class; Root;rootrank;Bacteria;domain;Firmicutes;ph class-unclas- -2261 unclassified_Bacilli 0.03 0.13 0.22 0.30 ylum;Bacilli;class;unclassified_Bacilli;; sified Root;rootrank;Bacteria;domain;Firmicutes;ph class-unclas- -2376 unclassified_Clostridia 0.03 0.03 0.07 0.15 ylum;Clostridia;class;unclassified_Clostridia;; sified Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Betapro- class-unclas- -1176 ria";phylum;Betaproteobacteria;class;unclass 0.05 0.04 0.18 0.04 teobacteria sified ified_Beta Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Gam- class-unclas- -1502 ria";phylum;Gammaproteobacteria;class;unc 0.35 0.01 0.08 0.02 maproteobacteria sified lassified_G Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Epsilon- class-unclas- -1478 ria";phylum;Epsilonproteobacteria;class;uncl 0.00 0.00 0.00 0.00 proteobacteria sified assified_E Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Deltapro- class-unclas- -1353 ria";phylum;Deltaproteobacteria;class;unclas 0.00 0.00 0.00 0.00 teobacteria sified sified_Del Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Alphapro- class-unclas- -843 ria";phylum;Alphaproteobacteria;class;uncla 0.00 0.00 0.00 0.00 teobacteria sified ssified_Alp Root;rootrank;Bacteria;domain;"Actinobacte unclassified_Actinobac- class-unclas- -17 ria";phylum;Actinobacteria;class;Actinobacte 0.00 0.00 0.00 0.00 teridae sified ridae;subc Root;rootrank;Bacteria;domain;"Actinobact unclassified_Actino- class-unclas- -4 eria";phylum;Actinobacteria;class;unclassifi 0.00 0.00 0.00 0.00 bacteria sified ed_Actinobac Root;rootrank;Bacteria;domain;"Tenericutes class-unclas- -1923 ";phylum;Mollicutes;class;unclassified_Mol- unclassified_Mollicutes 0.00 0.00 0.00 0.00 sified licutes;; Root;rootrank;Bacteria;domain;Cyanobacter unclassified_Cyano- class-unclas- -2686 ia/Chloroplast;phylum;Cyanobacteria;class;u 0.00 0.00 0.00 0.00 bacteria sified nclassified_ Root;rootrank;Archaea;domain;"Crenarcha unclassified_Thermo- class-unclas- -1969 eota";phylum;Thermoprotei;class;unclassifi 0.00 0.00 0.00 0.00 protei sified ed_Thermopr Root;rootrank;Bacteria;domain;"Actinobacte 362 ria";phylum;Actinobacteria;class;Coriobacte Coriobacteridae subclass 0.17 0.04 0.12 0.10 ridae;subcl Root;rootrank;Bacteria;domain;"Actinobacte 16 ria";phylum;Actinobacteria;class;Actinobacte Actinobacteridae subclass 0.01 0.00 0.04 0.00 ridae;subc Root;rootrank;Bacteria;domain;"Bactero unclassified_ "Bacteroi- class-unclas- -658 idetes";phylum;"Bacteroidetes"_incertae_ 0.00 0.00 0.00 0.00 detes"_incert sified sedis;class;unclas
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Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc Root;rootrank;Bacteria;domain;Firmicutes;p unclassified_Clostridi- family-unclas- -2434 hylum;Clostridia;class;Clostridiales;order;Clo 0.04 0.03 0.03 0.02 ales_Incertae S sified stridiales_In Root;rootrank;Bacteria;domain;Firmicutes;p unclassified_Clostridi- family-unclas- -2430 hylum;Clostridia;class;Clostridiales;order;Clo 0.00 0.00 0.00 0.00 ales_Incertae S sified stridiales_In Root;rootrank;Bacteria;domain;"Bacteroidet 424 es";phylum;"Bacteroidia";class;"Bacteroidale Bacteroidales order 37.34 48.86 47.66 42.54 s";order; Root;rootrank;Bacteria;domain;"Bacteroidet 566 es";phylum;"Sphingobacteria";class;"Sphingo Sphingobacteriales order 0.05 0.05 0.07 0.09 bacteriales Root;rootrank;Bacteria;domain;"Bacteroidet 459 es";phylum;Flavobacteria;class;"Flavobacteri Flavobacteriales order 0.00 0.00 0.01 0.01 ales";order Root;rootrank;Bacteria;domain;Firmicutes; 2723 phylum;Negativicutes;class;Selenomonadale Selenomonadales order 15.03 10.45 1.56 1.41 s;order; Root;rootrank;Bacteria;domain;Firmicutes;p 2559 hylum;Erysipelotrichia;class;Erysipelotricha Erysipelotrichales order 3.15 3.54 0.81 1.47 les;order; Root;rootrank;Bacteria;domain;Firmicutes;ph 2376 Clostridiales order 20.25 24.52 25.62 28.15 ylum;Clostridia;class;Clostridiales;order; Root;rootrank;Bacteria;domain;Firmicutes;p Thermoanaerobacte- 2544 hylum;Clostridia;class;Thermoanaerobactera order 0.00 0.00 0.00 0.00 rales les;order; Root;rootrank;Bacteria;domain;Firmicutes;ph 2333 Lactobacillales order 1.04 0.69 10.50 13.64 ylum;Bacilli;class;Lactobacillales;order; Root;rootrank;Bacteria;domain;Firmicutes;ph 2261 Bacillales order 0.00 2.20 0.00 0.00 ylum;Bacilli;class;Bacillales;order; Root;rootrank;Bacteria;domain;"Proteobacte 1616 ria";phylum;Gammaproteobacteria;class;"En Enterobacteriales order 10.17 0.05 1.04 0.04 terobacter Root;rootrank;Bacteria;domain;"Proteobacte 1507 ria";phylum;Gammaproteobacteria;class;Aer Aeromonadales order 1.75 0.01 0.30 0.03 omonadal Root;rootrank;Bacteria;domain;"Proteobacte 1745 ria";phylum;Gammaproteobacteria;class;Pas Pasteurellales order 0.00 0.00 0.00 0.00 teurellales Root;rootrank;Bacteria;domain;"Proteobacte 1762 ria";phylum;Gammaproteobacteria;class;Pse Pseudomonadales order 0.00 0.00 0.00 0.00 udomonad Root;rootrank;Bacteria;domain;"Proteobacte 870 ria";phylum;Alphaproteobacteria;class;Rhizo Rhizobiales order 0.81 0.84 1.04 0.64 biales;orde Root;rootrank;Bacteria;domain;"Proteobacte 1151 ria";phylum;Alphaproteobacteria;class;Sphin Sphingomonadales order 0.00 0.00 0.00 0.00 gomonada Root;rootrank;Bacteria;domain;"Proteobacte 1069 ria";phylum;Alphaproteobacteria;class;Rhod Rhodospirillales order 0.00 0.00 0.00 0.00 ospirillales Root;rootrank;Bacteria;domain;"Proteobacte 978 ria";phylum;Alphaproteobacteria;class;Rhod Rhodobacterales order 0.00 0.00 0.00 0.00 obacterale Root;rootrank;Bacteria;domain;"Proteobacte 1176 ria";phylum;Betaproteobacteria;class;Burkho Burkholderiales order 1.73 1.77 0.01 0.00 lderiales;o Root;rootrank;Bacteria;domain;"Proteobacte 1285 ria";phylum;Betaproteobacteria;class;Neisser Neisseriales order 0.00 0.00 0.00 0.00 iales;orde
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Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc Root;rootrank;Bacteria;domain;"Proteobacte 1330 ria";phylum;Betaproteobacteria;class;Rhodo Rhodocyclales order 0.00 0.00 0.00 0.00 cyclales;or Root;rootrank;Bacteria;domain;"Proteobacte 1478 ria";phylum;Epsilonproteobacteria;class;Cam Campylobacterales order 0.05 0.01 0.05 0.01 pylobacte Root;rootrank;Bacteria;domain;"Proteobacte 1353 ria";phylum;Deltaproteobacteria;class;Bdello Bdellovibrionales order 0.00 0.00 0.00 0.00 vibrionale Root;rootrank;Bacteria;domain;"Proteobacte 1395 ria";phylum;Deltaproteobacteria;class;Desulf Desulfovibrionales order 0.00 0.00 0.00 0.00 ovibrional Root;rootrank;Bacteria;domain;"Fusobacteri 791 a";phylum;"Fusobacteria";class;"Fusobacteria Fusobacteriales order 0.08 0.00 0.04 0.00 les";order Root;rootrank;Bacteria;domain;"Actinobacte 363 ria";phylum;Actinobacteria;class;Coriobacte Coriobacteriales order 0.17 0.04 0.12 0.10 ridae;subcl Root;rootrank;Bacteria;domain;"Actinobacte 353 ria";phylum;Actinobacteria;class;Actinobacte Bifidobacteriales order 0.01 0.00 0.04 0.00 ridae;subc Root;rootrank;Bacteria;domain;"Actinobacte 17 ria";phylum;Actinobacteria;class;Actinobacte Actinomycetales order 0.00 0.00 0.00 0.00 ridae;subc Root;rootrank;Bacteria;domain;"Tenericutes 1926 ";phylum;Mollicutes;class;Anaeroplasmatale Anaeroplasmatales order 0.01 0.02 0.05 0.01 s;order; Root;rootrank;Bacteria;domain;"Tenericute 1936 s";phylum;Mollicutes;class;Haloplasmatales; Haloplasmatales order 0.00 0.00 0.00 0.00 order; Root;rootrank;Bacteria;domain;"Spirochaet 1885 es";phylum;Spirochaetes;class;Spirochaetale Spirochaetales order 0.00 0.00 0.00 0.00 s;order; Root;rootrank;Bacteria;domain;"Synergistetes 1908 Synergistales order 0.01 0.00 0.00 0.00 ";phylum;Synergistia;class;Synergistales;order; Root;rootrank;Bacteria;domain;"Deferribact 748 eres";phylum;Deferribacteres;class;Deferriba Deferribacterales order 0.00 0.00 0.00 0.00 cterales;or Root;rootrank;Bacteria;domain;"Fibrobacter 786 es";phylum;"Fibrobacteria";class;"Fibrobacter Fibrobacterales order 0.00 0.00 0.00 0.00 ales";orde Root;rootrank;Bacteria;domain;"Chlamydiae"; 669 Chlamydiales order 0.00 0.00 0.00 0.00 phylum;Chlamydiae;class;Chlamydiales;order; Root;rootrank;Bacteria;domain;"Elusimicrob 781 ia";phylum;Elusimicrobia;class;Elusimicrobi Elusimicrobiales order 0.00 0.00 0.00 0.00 ales;order; Root;rootrank;Bacteria;domain;"Planctomyc 826 etes";phylum;"Planctomycetacia";class;Planct Planctomycetales order 0.00 0.00 0.00 0.00 omycetale Root;rootrank;Bacteria;domain;"Lentisphae 814 rae";phylum;"Lentisphaeria";class;Victivallal Victivallales order 0.00 0.00 0.00 0.00 es;order; Root;rootrank;Archaea;domain;"Crenarchae 1974 ota";phylum;Thermoprotei;class;Desulfuroco Desulfurococcales order 0.00 0.00 0.00 0.00 ccales;orde Root;rootrank;Archaea;domain;"Euryarchae 2056 ota";phylum;Methanobacteria;class;Methano Methanobacteriales order 0.00 0.00 0.00 0.00 bacteriales Root;rootrank;Bacteria;domain;"Bacteroidet unclassified_ "Bacteroi- order-unclas- -425 es";phylum;"Bacteroidia";class;"Bacteroidales 4.74 7.26 2.69 1.92 dales" sified ";order;un
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Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc Root;rootrank;Bacteria;domain;"Bacteroidet unclassified_"Sphingob order-unclas- -567 es";phylum;"Sphingobacteria";class;"Sphingo 0.04 0.04 0.06 0.08 acteriales" sified bacteriales Root;rootrank;Bacteria;domain;"Bacteroidet unclassified_ "Flavobac- order-unclas- -460 es";phylum;Flavobacteria;class;"Flavobacteri 0.00 0.00 0.00 0.00 teriales" sified ales";order Root;rootrank;Bacteria;domain;Firmicutes;p unclassified_Selenomo- order-unclas- -2724 hylum;Negativicutes;class;Selenomonadales; 0.43 0.27 0.09 0.08 nadales sified order;uncla Root;rootrank;Bacteria;domain;Firmicutes;p unclassified_Clostridi- order-unclas- -2377 hylum;Clostridia;class;Clostridiales;order;un 0.87 1.23 2.75 5.06 ales sified classified_Cl Root;rootrank;Bacteria;domain;Firmicutes;p unclassified_Lacto- order-unclas- -2334 hylum;Bacilli;class;Lactobacillales;order;uncl 0.22 0.17 2.24 2.64 bacillales sified assified_Lac Root;rootrank;Bacteria;domain;Firmicutes;p order-unclas- -2262 hylum;Bacilli;class;Bacillales;order;unclassifi unclassified_Bacillales 0.00 0.34 0.00 0.00 sified ed_Bacillale Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Aeromo- order-unclas- -1508 ria";phylum;Gammaproteobacteria;class;Aer 0.00 0.00 0.00 0.00 nadales sified omonadal Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Rho- order-unclas- -1070 ria";phylum;Alphaproteobacteria;class;Rhod 0.00 0.00 0.00 0.00 dospirillales sified ospirillales Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Sphingo- order-unclas- -1152 ria";phylum;Alphaproteobacteria;class;Sphin 0.00 0.00 0.00 0.00 monadales sified gomonada Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Rhizo- order-unclas- -871 ria";phylum;Alphaproteobacteria;class;Rhizo 0.00 0.00 0.00 0.00 biales sified biales;orde Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Burk- order-unclas- -1177 ria";phylum;Betaproteobacteria;class;Burkho 0.16 0.06 0.00 0.00 holderiales sified lderiales;o Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Campylo- order-unclas- -1479 ria";phylum;Epsilonproteobacteria;class;Cam 0.00 0.00 0.00 0.00 bacterales sified pylobacte Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Desulfovi- order-unclas- -1396 ria";phylum;Deltaproteobacteria;class;Desulf 0.00 0.00 0.00 0.00 brionales sified ovibrional Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Bdellovi- order-unclas- -1354 ria";phylum;Deltaproteobacteria;class;Bdello 0.00 0.00 0.00 0.00 brionales sified vibrionale Root;rootrank;Bacteria;domain;"Fusobacteri unclassified_ "Fusobac- order-unclas- -792 a";phylum;"Fusobacteria";class;"Fusobacteria 0.00 0.00 0.00 0.00 teriales" sified les";order Root;rootrank;Bacteria;domain;"Actinobacte unclassified_Actinomy- order-unclas- -18 ria";phylum;Actinobacteria;class;Actinobacte 0.00 0.00 0.00 0.00 cetales sified ridae;subc Root;rootrank;Bacteria;domain;"Spirochaete unclassified_Spiro- order-unclas- -1886 s";phylum;Spirochaetes;class;Spirochaetales; 0.00 0.00 0.00 0.00 chaetales sified order;uncl Root;rootrank;Archaea;domain;"Crenarchae unclassified_Desulfuro- order-unclas- -1975 ota";phylum;Thermoprotei;class;Desulfuroco 0.00 0.00 0.00 0.00 coccales sified ccales;orde Root;rootrank;Bacteria;domain;"Actinobacte 364 ria";phylum;Actinobacteria;class;Coriobacte Coriobacterineae suborder 0.17 0.04 0.12 0.10 ridae;subcl Root;rootrank;Bacteria;domain;"Actinobacte 254 ria";phylum;Actinobacteria;class;Actinobacte Propionibacterineae suborder 0.00 0.00 0.00 0.00 ridae;subc
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5 Journal of Veterinary Science & Animal Husbandry
Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc Root;rootrank;Bacteria;domain;"Actinobacte 95 ria";phylum;Actinobacteria;class;Actinobacte Micrococcineae suborder 0.00 0.00 0.00 0.00 ridae;subc Root;rootrank;Bacteria;domain;"Actinobacte 35 ria";phylum;Actinobacteria;class;Actinobacte Corynebacterineae suborder 0.00 0.00 0.00 0.00 ridae;subc Root;rootrank;Bacteria;domain;"Actinobacte 18 ria";phylum;Actinobacteria;class;Actinobacte Actinomycineae suborder 0.00 0.00 0.00 0.00 ridae;subc Root;rootrank;Bacteria;domain;"Actinobacte 280 ria";phylum;Actinobacteria;class;Actinobacte Pseudonocardineae suborder 0.00 0.00 0.00 0.00 ridae;subc Root;rootrank;Bacteria;domain;"Actinobacte unclassified_Micrococ- suborder- -96 ria";phylum;Actinobacteria;class;Actinobacte 0.00 0.00 0.00 0.00 cineae unclassified ridae;subc Root;rootrank;Bacteria;domain;"Actinobacte unclassified_ suborder- -36 ria";phylum;Actinobacteria;class;Actinobacte 0.00 0.00 0.00 0.00 Corynebacterineae unclassified ridae;subc Root;rootrank;Bacteria;domain;"Bacteroidet 448 es";phylum;"Bacteroidia";class;"Bacteroidales Prevotellaceae family 25.53 34.52 34.71 33.90 ";order;"P Root;rootrank;Bacteria;domain;"Bacteroidet 436 es";phylum;"Bacteroidia";class;"Bacteroidales Porphyromonadaceae family 6.76 6.82 10.03 6.59 ";order;"P Root;rootrank;Bacteria;domain;"Bacteroidet 453 es";phylum;"Bacteroidia";class;"Bacteroidales Rikenellaceae family 0.02 0.03 0.01 0.01 ";order;"R Root;rootrank;Bacteria;domain;"Bacteroidet 425 es";phylum;"Bacteroidia";class;"Bacteroidales Bacteroidaceae family 0.28 0.21 0.20 0.11 ";order;Ba Root;rootrank;Bacteria;domain;"Bacteroidet 432 es";phylum;"Bacteroidia";class;"Bacteroidales Marinilabiaceae family 0.02 0.02 0.01 0.01 ";order;"M Root;rootrank;Bacteria;domain;"Bacteroidet Bacteroidales_incer- 456 es";phylum;"Bacteroidia";class;"Bacteroidales family 0.00 0.00 0.00 0.00 tae_sedis ";order;"B Root;rootrank;Bacteria;domain;"Bacteroidet 567 es";phylum;"Sphingobacteria";class;"Sphingo Chitinophagaceae family 0.00 0.00 0.00 0.00 bacteriales Root;rootrank;Bacteria;domain;"Bacteroidet 595 es";phylum;"Sphingobacteria";class;"Sphingo Cytophagaceae family 0.00 0.00 0.00 0.01 bacteriales Root;rootrank;Bacteria;domain;"Bacteroidet 648 es";phylum;"Sphingobacteria";class;"Sphingo Sphingobacteriaceae family 0.00 0.00 0.00 0.00 bacteriales Root;rootrank;Bacteria;domain;"Bacteroidet 622 es";phylum;"Sphingobacteria";class;"Sphingo Flammeovirgaceae family 0.00 0.00 0.00 0.00 bacteriales Root;rootrank;Bacteria;domain;"Bacteroidet 584 es";phylum;"Sphingobacteria";class;"Sphingo Cyclobacteriaceae family 0.00 0.00 0.00 0.00 bacteriales Root;rootrank;Bacteria;domain;"Bacteroidet 470 es";phylum;Flavobacteria;class;"Flavobacteri Flavobacteriaceae family 0.00 0.00 0.00 0.00 ales";order Root;rootrank;Bacteria;domain;Firmicutes;p 2503 hylum;Negativicutes;class;Selenomonadales; Veillonellaceae family 5.41 3.53 0.43 0.53 order;Veillo Root;rootrank;Bacteria;domain;Firmicutes;p 2724 hylum;Negativicutes;class;Selenomonadales; Acidaminococcaceae family 9.19 6.64 1.04 0.80 order;Acida
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Journal of Veterinary Science & Animal Husbandry 8
Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc Root;rootrank;Bacteria;domain;Firmicutes;p 2560 hylum;Erysipelotrichia;class;Erysipelotrichal Erysipelotrichaceae family 3.15 3.54 0.81 1.47 es;order;Ery Root;rootrank;Bacteria;domain;Firmicutes;p 2445 hylum;Clostridia;class;Clostridiales;order;La Lachnospiraceae family 9.15 17.10 12.27 10.82 chnospirace Root;rootrank;Bacteria;domain;Firmicutes;p 2484 hylum;Clostridia;class;Clostridiales;order;Ru Ruminococcaceae family 9.73 5.67 7.56 6.78 minococcac Root;rootrank;Bacteria;domain;Firmicutes;p 2377 hylum;Clostridia;class;Clostridiales;order;Cl Clostridiaceae 1 family 0.12 0.29 1.70 4.31 ostridiaceae Root;rootrank;Bacteria;domain;Firmicutes;p Clostridiales_Incertae 2433 hylum;Clostridia;class;Clostridiales;order;Clo family 0.30 0.18 0.28 0.46 Sedis XIII stridiales_In Root;rootrank;Bacteria;domain;Firmicutes;p 2479 hylum;Clostridia;class;Clostridiales;order;Pe Peptostreptococcaceae family 0.04 0.03 0.50 0.46 ptostreptoc Root;rootrank;Bacteria;domain;Firmicutes;p 2395 hylum;Clostridia;class;Clostridiales;order;Eu Eubacteriaceae family 0.03 0.01 0.54 0.26 bacteriaceae Root;rootrank;Bacteria;domain;Firmicutes;p Clostridiales_Incertae 2417 hylum;Clostridia;class;Clostridiales;order;Clo family 0.00 0.01 0.00 0.00 Sedis XI stridiales_In Root;rootrank;Bacteria;domain;Firmicutes;p 2470 hylum;Clostridia;class;Clostridiales;order;Pe Peptococcaceae 1 family 0.00 0.00 0.02 0.01 ptococcacea Root;rootrank;Bacteria;domain;Firmicutes;p Clostridiales_Incertae 2429 hylum;Clostridia;class;Clostridiales;order;Clo family 0.00 0.00 0.00 0.00 Sedis XII stridiales_In Root;rootrank;Bacteria;domain;Firmicutes;p 2402 hylum;Clostridia;class;Clostridiales;order;Gr Gracilibacteraceae family 0.00 0.00 0.00 0.00 acilibacterac Root;rootrank;Bacteria;domain;Firmicutes;p 2627 hylum;Clostridia;class;Clostridiales;order;In Incertae Sedis XI family 0.00 0.00 0.00 0.00 certae Sedis Root;rootrank;Bacteria;domain;Firmicutes;p 2393 hylum;Clostridia;class;Clostridiales;order;Cl Clostridiaceae 4 family 0.00 0.00 0.00 0.00 ostridiaceae Root;rootrank;Bacteria;domain;Firmicutes;p Clostridiales_incer- 2674 hylum;Clostridia;class;Clostridiales;order;Clo family 0.00 0.00 0.00 0.00 tae_sedis stridiales_in Root;rootrank;Bacteria;domain;Firmicutes;p Thermoanaerobacte- 2545 hylum;Clostridia;class;Thermoanaerobactera family 0.00 0.00 0.00 0.00 raceae les;order;T Root;rootrank;Bacteria;domain;Firmicutes;p 2363 hylum;Bacilli;class;Lactobacillales;order;Lact Lactobacillaceae family 0.63 0.50 6.86 10.56 obacillaceae Root;rootrank;Bacteria;domain;Firmicutes;p 2371 hylum;Bacilli;class;Lactobacillales;order;Stre Streptococcaceae family 0.17 0.00 1.10 0.06 ptococcacea Root;rootrank;Bacteria;domain;Firmicutes;p 2342 hylum;Bacilli;class;Lactobacillales;order;Carn Carnobacteriaceae family 0.03 0.02 0.23 0.38 obacteriace Root;rootrank;Bacteria;domain;Firmicutes;p 2357 hylum;Bacilli;class;Lactobacillales;order;Ente Enterococcaceae family 0.00 0.00 0.06 0.00 rococcacea Root;rootrank;Bacteria;domain;Firmicutes;p 2334 hylum;Bacilli;class;Lactobacillales;order;Aer Aerococcaceae family 0.00 0.00 0.00 0.00 ococcaceae;
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7 Journal of Veterinary Science & Animal Husbandry
Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc Root;rootrank;Bacteria;domain;Firmicutes;p 2367 hylum;Bacilli;class;Lactobacillales;order;Leuc Leuconostocaceae family 0.00 0.00 0.00 0.00 onostocace Root;rootrank;Bacteria;domain;Firmicutes;p 2308 hylum;Bacilli;class;Bacillales;order;Planococ Planococcaceae family 0.00 1.19 0.00 0.00 caceae;famil Root;rootrank;Bacteria;domain;Firmicutes;p 2269 hylum;Bacilli;class;Bacillales;order;Bacillace Bacillaceae 2 family 0.00 0.11 0.00 0.00 ae 2;family; Root;rootrank;Bacteria;domain;Firmicutes;p 2264 hylum;Bacilli;class;Bacillales;order;Bacillace Bacillaceae 1 family 0.00 0.55 0.00 0.00 ae 1;family; Root;rootrank;Bacteria;domain;Firmicutes;p 2302 hylum;Bacilli;class;Bacillales;order;Paenibaci Paenibacillaceae 2 family 0.00 0.00 0.00 0.00 llaceae 2;fa Root;rootrank;Bacteria;domain;Firmicutes;p 2320 hylum;Bacilli;class;Bacillales;order;Staphyloc Staphylococcaceae family 0.00 0.00 0.00 0.00 occaceae;fa Root;rootrank;Bacteria;domain;"Proteobacte 1617 ria";phylum;Gammaproteobacteria;class;"En Enterobacteriaceae family 10.17 0.05 1.04 0.04 terobacter Root;rootrank;Bacteria;domain;"Proteobacte 1514 ria";phylum;Gammaproteobacteria;class;Aer Succinivibrionaceae family 1.74 0.01 0.30 0.03 omonadal Root;rootrank;Bacteria;domain;"Proteobacte 1746 ria";phylum;Gammaproteobacteria;class;Pas Pasteurellaceae family 0.00 0.00 0.00 0.00 teurellales Root;rootrank;Bacteria;domain;"Proteobacte 1772 ria";phylum;Gammaproteobacteria;class;Pse Pseudomonadaceae family 0.00 0.00 0.00 0.00 udomonad Root;rootrank;Bacteria;domain;"Proteobacte 1763 ria";phylum;Gammaproteobacteria;class;Pse Moraxellaceae family 0.00 0.00 0.00 0.00 udomonad Root;rootrank;Bacteria;domain;"Proteobacte 908 ria";phylum;Alphaproteobacteria;class;Rhizo Hyphomicrobiaceae family 0.81 0.84 1.04 0.64 biales;orde Root;rootrank;Bacteria;domain;"Proteobacte 940 ria";phylum;Alphaproteobacteria;class;Rhizo Phyllobacteriaceae family 0.00 0.00 0.00 0.00 biales;orde Root;rootrank;Bacteria;domain;"Proteobacte 886 ria";phylum;Alphaproteobacteria;class;Rhizo Bradyrhizobiaceae family 0.00 0.00 0.00 0.00 biales;orde Root;rootrank;Bacteria;domain;"Proteobacte 959 ria";phylum;Alphaproteobacteria;class;Rhizo Rhodobiaceae family 0.00 0.00 0.00 0.00 biales;orde Root;rootrank;Bacteria;domain;"Proteobacte 950 ria";phylum;Alphaproteobacteria;class;Rhizo Rhizobiaceae family 0.00 0.00 0.00 0.00 biales;orde Root;rootrank;Bacteria;domain;"Proteobacte 898 ria";phylum;Alphaproteobacteria;class;Rhizo Brucellaceae family 0.00 0.00 0.00 0.00 biales;orde Root;rootrank;Bacteria;domain;"Proteobacte 927 ria";phylum;Alphaproteobacteria;class;Rhizo Methylobacteriaceae family 0.00 0.00 0.00 0.00 biales;orde Root;rootrank;Bacteria;domain;"Proteobacte 1158 ria";phylum;Alphaproteobacteria;class;Sphin Sphingomonadaceae family 0.00 0.00 0.00 0.00 gomonada Root;rootrank;Bacteria;domain;"Proteobacte 979 ria";phylum;Alphaproteobacteria;class;Rhod Rhodobacteraceae family 0.00 0.00 0.00 0.00 obacterale
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Journal of Veterinary Science & Animal Husbandry 10
Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc Root;rootrank;Bacteria;domain;"Proteobacte 1252 ria";phylum;Betaproteobacteria;class;Burkho Sutterellaceae family 1.56 1.71 0.01 0.00 lderiales;o Root;rootrank;Bacteria;domain;"Proteobacte Burkholderiales_incer- 1255 ria";phylum;Betaproteobacteria;class;Burkho family 0.01 0.00 0.00 0.00 tae_sedis lderiales;o Root;rootrank;Bacteria;domain;"Proteobacte 1240 ria";phylum;Betaproteobacteria;class;Burkho Oxalobacteraceae family 0.00 0.00 0.00 0.00 lderiales;o Root;rootrank;Bacteria;domain;"Proteobacte 1206 ria";phylum;Betaproteobacteria;class;Burkho Comamonadaceae family 0.00 0.00 0.00 0.00 lderiales;o Root;rootrank;Bacteria;domain;"Proteobacte 1177 ria";phylum;Betaproteobacteria;class;Burkho Alcaligenaceae family 0.00 0.00 0.00 0.00 lderiales;o Root;rootrank;Bacteria;domain;"Proteobacte 1286 ria";phylum;Betaproteobacteria;class;Neisser Neisseriaceae family 0.00 0.00 0.00 0.00 iales;orde Root;rootrank;Bacteria;domain;"Proteobacte 1331 ria";phylum;Betaproteobacteria;class;Rhodo Rhodocyclaceae family 0.00 0.00 0.00 0.00 cyclales;or Root;rootrank;Bacteria;domain;"Proteobacte 1479 ria";phylum;Epsilonproteobacteria;class;Cam Campylobacteraceae family 0.04 0.01 0.03 0.01 pylobacte Root;rootrank;Bacteria;domain;"Proteobacte 1484 ria";phylum;Epsilonproteobacteria;class;Cam Helicobacteraceae family 0.01 0.00 0.02 0.00 pylobacte Root;rootrank;Bacteria;domain;"Proteobacte 1491 ria";phylum;Epsilonproteobacteria;class;Cam Hydrogenimonaceae family 0.00 0.00 0.00 0.00 pylobacte Root;rootrank;Bacteria;domain;"Proteobacte 1357 ria";phylum;Deltaproteobacteria;class;Bdello Bdellovibrionaceae family 0.00 0.00 0.00 0.00 vibrionale Root;rootrank;Bacteria;domain;"Proteobacte 1407 ria";phylum;Deltaproteobacteria;class;Desulf Desulfovibrionaceae family 0.00 0.00 0.00 0.00 ovibrional Root;rootrank;Bacteria;domain;"Proteobacte 1396 ria";phylum;Deltaproteobacteria;class;Desulf Desulfohalobiaceae family 0.00 0.00 0.00 0.00 ovibrional Root;rootrank;Bacteria;domain;"Fusobacteri 792 a";phylum;"Fusobacteria";class;"Fusobacteria Fusobacteriaceae family 0.08 0.00 0.04 0.00 les";order Root;rootrank;Bacteria;domain;"Actinobacte 365 ria";phylum;Actinobacteria;class;Coriobacte Coriobacteriaceae family 0.17 0.04 0.12 0.10 ridae;subcl Root;rootrank;Bacteria;domain;"Actinobacte 354 ria";phylum;Actinobacteria;class;Actinobacte Bifidobacteriaceae family 0.01 0.00 0.04 0.00 ridae;subc Root;rootrank;Bacteria;domain;"Actinobacte 264 ria";phylum;Actinobacteria;class;Actinobacte Propionibacteriaceae family 0.00 0.00 0.00 0.00 ridae;subc Root;rootrank;Bacteria;domain;"Actinobacte 154 ria";phylum;Actinobacteria;class;Actinobacte Microbacteriaceae family 0.00 0.00 0.00 0.00 ridae;subc Root;rootrank;Bacteria;domain;"Actinobacte 190 ria";phylum;Actinobacteria;class;Actinobacte Micrococcaceae family 0.00 0.00 0.00 0.00 ridae;subc Root;rootrank;Bacteria;domain;"Actinobacte 36 ria";phylum;Actinobacteria;class;Actinobacte Corynebacteriaceae family 0.00 0.00 0.00 0.00 ridae;subc
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9 Journal of Veterinary Science & Animal Husbandry
Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc Root;rootrank;Bacteria;domain;"Actinobacte 46 ria";phylum;Actinobacteria;class;Actinobacte Mycobacteriaceae family 0.00 0.00 0.00 0.00 ridae;subc Root;rootrank;Bacteria;domain;"Actinobacte 41 ria";phylum;Actinobacteria;class;Actinobacte Dietziaceae family 0.00 0.00 0.00 0.00 ridae;subc Root;rootrank;Bacteria;domain;"Actinobacte 19 ria";phylum;Actinobacteria;class;Actinobacte Actinomycetaceae family 0.00 0.00 0.00 0.00 ridae;subc Root;rootrank;Bacteria;domain;"Actinobacte 281 ria";phylum;Actinobacteria;class;Actinobacte Pseudonocardiaceae family 0.00 0.00 0.00 0.00 ridae;subc Root;rootrank;Bacteria;domain;"Tenericutes 1927 ";phylum;Mollicutes;class;Anaeroplasmatales Anaeroplasmataceae family 0.01 0.02 0.05 0.01 ;order;Ana Root;rootrank;Bacteria;domain;"Tenericutes 1937 ";phylum;Mollicutes;class;Haloplasmatales;or Haloplasmataceae family 0.00 0.00 0.00 0.00 der;Halopl Root;rootrank;Bacteria;domain;"Spirochaete 1895 s";phylum;Spirochaetes;class;Spirochaetales; Spirochaetaceae family 0.00 0.00 0.00 0.00 order;Spir Root;rootrank;Bacteria;domain;"Synergistete 1909 s";phylum;Synergistia;class;Synergistales;ord Synergistaceae family 0.01 0.00 0.00 0.00 er;Synergi Root;rootrank;Bacteria;domain;"Deferribact 749 eres";phylum;Deferribacteres;class;Deferriba Deferribacteraceae family 0.00 0.00 0.00 0.00 cterales;or Root;rootrank;Bacteria;domain;"Fibrobacter 787 es";phylum;"Fibrobacteria";class;"Fibrobacter Fibrobacteraceae family 0.00 0.00 0.00 0.00 ales";orde Root;rootrank;Bacteria;domain;Cyanobacter 2714 ia/Chloroplast;phylum;Chloroplast;class;Chl Chloroplast family 0.00 0.00 0.00 0.00 oroplast;fam Root;rootrank;Bacteria;domain;"Chlamydiae 670 ";phylum;Chlamydiae;class;Chlamydiales;ord Chlamydiaceae family 0.00 0.00 0.00 0.00 er;Chlamyd Root;rootrank;Bacteria;domain;"Elusimicrob 782 ia";phylum;Elusimicrobia;class;Elusimicrobia Elusimicrobiaceae family 0.00 0.00 0.00 0.00 les;order;El Root;rootrank;Bacteria;domain;"Planctomyc 827 etes";phylum;"Planctomycetacia";class;Planct Planctomycetaceae family 0.00 0.00 0.00 0.00 omycetale Root;rootrank;Bacteria;domain;"Lentisphaer 815 ae";phylum;"Lentisphaeria";class;Victivallale Victivallaceae family 0.00 0.00 0.00 0.00 s;order;"Vi Root;rootrank;Archaea;domain;"Crenarchae 1985 ota";phylum;Thermoprotei;class;Desulfuroco Pyrodictiaceae family 0.00 0.00 0.00 0.00 ccales;orde Root;rootrank;Archaea;domain;"Euryarchae 2057 ota";phylum;Methanobacteria;class;Methano Methanobacteriaceae family 0.00 0.00 0.00 0.00 bacteriales Root;rootrank;Bacteria;domain;"Bacteroidet unclassified_ "Prevotel- family-unclas- -449 es";phylum;"Bacteroidia";class;"Bacteroidales 4.65 5.39 7.09 6.04 laceae" sified ";order;"P Root;rootrank;Bacteria;domain;"Bacteroidet unclassified_"Porphyro family-unclas- -437 es";phylum;"Bacteroidia";class;"Bacteroidales 1.76 1.68 2.98 2.01 monadaceae sified ";order;"P Root;rootrank;Bacteria;domain;"Bacteroidet unclassified_ "Marinila- family-unclas- -433 es";phylum;"Bacteroidia";class;"Bacteroidales 0.01 0.01 0.01 0.01 biaceae" sified ";order;"M
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Journal of Veterinary Science & Animal Husbandry 12
Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc Root;rootrank;Bacteria;domain;"Bacteroidet unclassified_ "Rikenel- family-unclas- -454 es";phylum;"Bacteroidia";class;"Bacteroidales 0.00 0.00 0.00 0.00 laceae" sified ";order;"R Root;rootrank;Bacteria;domain;"Bacteroidet unclassified_Bacteroi- family-unclas- -426 es";phylum;"Bacteroidia";class;"Bacteroidales 0.00 0.00 0.00 0.00 daceae sified ";order;Ba Root;rootrank;Bacteria;domain;"Bacteroidet unclassified_Cy- family-unclas- -596 es";phylum;"Sphingobacteria";class;"Sphingo 0.00 0.00 0.00 0.01 tophagaceae sified bacteriales Root;rootrank;Bacteria;domain;"Bacteroidet unclassified_Sphingob- family-unclas- -649 es";phylum;"Sphingobacteria";class;"Sphingo 0.00 0.00 0.00 0.00 acteriaceae sified bacteriales Root;rootrank;Bacteria;domain;"Bacteroidet unclassified_Chitin- family-unclas- -568 es";phylum;"Sphingobacteria";class;"Sphingo 0.00 0.00 0.00 0.00 ophagaceae sified bacteriales Root;rootrank;Bacteria;domain;"Bacteroidet unclassified_ "Flam- family-unclas- -623 es";phylum;"Sphingobacteria";class;"Sphingo 0.00 0.00 0.00 0.00 meovirgaceae" sified bacteriales Root;rootrank;Bacteria;domain;"Bacteroidet unclassified_"Cyclobact family-unclas- -585 es";phylum;"Sphingobacteria";class;"Sphingo 0.00 0.00 0.00 0.00 eriaceae" sified bacteriales Root;rootrank;Bacteria;domain;"Bacteroidet unclassified_Flavobac- family-unclas- -471 es";phylum;Flavobacteria;class;"Flavobacteri 0.00 0.00 0.00 0.00 teriaceae sified ales";order Root;rootrank;Bacteria;domain;Firmicutes;p unclassified_Veillonel- family-unclas- -2504 hylum;Negativicutes;class;Selenomonadales; 1.27 0.57 0.14 0.17 laceae sified order;Veillo Root;rootrank;Bacteria;domain;Firmicutes;p unclassified_Acidami- family-unclas- -2725 hylum;Negativicutes;class;Selenomonadales; 0.44 0.37 0.10 0.07 nococcaceae sified order;Acida Root;rootrank;Bacteria;domain;Firmicutes;p unclassified_Erysipel- family-unclas- -2561 hylum;Erysipelotrichia;class;Erysipelotrichal 0.65 1.23 0.20 0.54 otrichaceae sified es;order;Ery Root;rootrank;Bacteria;domain;Firmicutes;p unclassified_Lachno- family-unclas- -2446 hylum;Clostridia;class;Clostridiales;order;La 3.17 6.76 5.97 5.46 spiraceae sified chnospirace Root;rootrank;Bacteria;domain;Firmicutes;p unclassified_Rumino- family-unclas- -2485 hylum;Clostridia;class;Clostridiales;order;Ru 1.54 1.08 3.29 3.69 coccaceae sified minococcac Root;rootrank;Bacteria;domain;Firmicutes;p unclassified_Clostridi- family-unclas- -2378 hylum;Clostridia;class;Clostridiales;order;Cl 0.03 0.08 0.55 1.19 aceae 1 sified ostridiaceae Root;rootrank;Bacteria;domain;Firmicutes;p unclassified_Peptos- family-unclas- -2480 hylum;Clostridia;class;Clostridiales;order;Pe 0.01 0.01 0.13 0.12 treptococcaceae sified ptostreptoc Root;rootrank;Bacteria;domain;Firmicutes;p unclassified_Eubacte- family-unclas- -2396 hylum;Clostridia;class;Clostridiales;order;Eu 0.00 0.00 0.01 0.00 riaceae sified bacteriaceae Root;rootrank;Bacteria;domain;Firmicutes;p unclassified_Clostridi- family-unclas- -2418 hylum;Clostridia;class;Clostridiales;order;Clo 0.00 0.00 0.00 0.00 ales_Incertae S sified stridiales_In Root;rootrank;Bacteria;domain;Firmicutes;p unclassified_Incertae family-unclas- -2628 hylum;Clostridia;class;Clostridiales;order;In 0.00 0.00 0.00 0.00 Sedis XI sified certae Sedis Root;rootrank;Bacteria;domain;Firmicutes;p unclassified_Gracilibac- family-unclas- -2403 hylum;Clostridia;class;Clostridiales;order;Gr 0.00 0.00 0.00 0.00 teraceae sified acilibacterac Root;rootrank;Bacteria;domain;Firmicutes;p unclassified_Peptococ- family-unclas- -2471 hylum;Clostridia;class;Clostridiales;order;Pe 0.00 0.00 0.00 0.00 caceae 1 sified ptococcacea
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11 Journal of Veterinary Science & Animal Husbandry
Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc Root;rootrank;Bacteria;domain;Firmicutes;p unclassified_Clostridi- family-unclas- -2394 hylum;Clostridia;class;Clostridiales;order;Cl 0.00 0.00 0.00 0.00 aceae 4 sified ostridiaceae Root;rootrank;Bacteria;domain;Firmicutes;p unclassified_Lacto- family-unclas- -2364 hylum;Bacilli;class;Lactobacillales;order;Lact 0.08 0.06 0.83 1.01 bacillaceae sified obacillaceae Root;rootrank;Bacteria;domain;Firmicutes;p unclassified_Carnobac- family-unclas- -2343 hylum;Bacilli;class;Lactobacillales;order;Carn 0.03 0.02 0.23 0.38 teriaceae sified obacteriace Root;rootrank;Bacteria;domain;Firmicutes;p unclassified_Strepto- family-unclas- -2372 hylum;Bacilli;class;Lactobacillales;order;Stre 0.01 0.00 0.06 0.01 coccaceae sified ptococcacea Root;rootrank;Bacteria;domain;Firmicutes;p unclassified_Enterococ- family-unclas- -2358 hylum;Bacilli;class;Lactobacillales;order;Ente 0.00 0.00 0.02 0.00 caceae sified rococcacea Root;rootrank;Bacteria;domain;Firmicutes;p unclassified_Aerococ- family-unclas- -2335 hylum;Bacilli;class;Lactobacillales;order;Aer 0.00 0.00 0.00 0.00 caceae sified ococcaceae; Root;rootrank;Bacteria;domain;Firmicutes;p unclassified_Leuconos- family-unclas- -2368 hylum;Bacilli;class;Lactobacillales;order;Leuc 0.00 0.00 0.00 0.00 tocaceae sified onostocace Root;rootrank;Bacteria;domain;Firmicutes;p unclassified_Planococ- family-unclas- -2309 hylum;Bacilli;class;Bacillales;order;Planococ 0.00 0.35 0.00 0.00 caceae sified caceae;famil Root;rootrank;Bacteria;domain;Firmicutes;p unclassified_Bacil- family-unclas- -2270 hylum;Bacilli;class;Bacillales;order;Bacillace 0.00 0.10 0.00 0.00 laceae 2 sified ae 2;family;u Root;rootrank;Bacteria;domain;Firmicutes;p unclassified_Bacil- family-unclas- -2265 hylum;Bacilli;class;Bacillales;order;Bacillace 0.00 0.13 0.00 0.00 laceae 1 sified ae 1;family;u Root;rootrank;Bacteria;domain;Firmicutes;p unclassified_Paenibacil- family-unclas- -2303 hylum;Bacilli;class;Bacillales;order;Paenibaci 0.00 0.00 0.00 0.00 laceae 2 sified llaceae 2;fa Root;rootrank;Bacteria;domain;Firmicutes;p unclassified_Staphylo- family-unclas- -2321 hylum;Bacilli;class;Bacillales;order;Staphyloc 0.00 0.00 0.00 0.00 coccaceae sified occaceae;fa Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Enterobac- family-unclas- -1618 ria";phylum;Gammaproteobacteria;class;"En 1.77 0.02 0.31 0.01 teriaceae sified terobacter Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Succinivi- family-unclas- -1515 ria";phylum;Gammaproteobacteria;class;Aer 0.01 0.00 0.00 0.00 brionaceae sified omonadal Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Pasteurel- family-unclas- -1747 ria";phylum;Gammaproteobacteria;class;Pas 0.00 0.00 0.00 0.00 laceae sified teurellales Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Pseu- family-unclas- -1773 ria";phylum;Gammaproteobacteria;class;Pse 0.00 0.00 0.00 0.00 domonadaceae sified udomonad Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Phyllobac- family-unclas- -941 ria";phylum;Alphaproteobacteria;class;Rhizo 0.00 0.00 0.00 0.00 teriaceae sified biales;orde Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Brucel- family-unclas- -899 ria";phylum;Alphaproteobacteria;class;Rhizo 0.00 0.00 0.00 0.00 laceae sified biales;orde Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Hyphomi- family-unclas- -909 ria";phylum;Alphaproteobacteria;class;Rhizo 0.00 0.00 0.00 0.00 crobiaceae sified biales;orde Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Sphingo- family-unclas- -1159 ria";phylum;Alphaproteobacteria;class;Sphin 0.00 0.00 0.00 0.00 monadaceae sified gomonada
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Journal of Veterinary Science & Animal Husbandry 14
Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Burk- family-unclas- -1256 ria";phylum;Betaproteobacteria;class;Burkho 0.01 0.00 0.00 0.00 holderiales_incert sified lderiales;o Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Sutterel- family-unclas- -1253 ria";phylum;Betaproteobacteria;class;Burkho 0.01 0.00 0.00 0.00 laceae sified lderiales;o Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Coma- family-unclas- -1207 ria";phylum;Betaproteobacteria;class;Burkho 0.00 0.00 0.00 0.00 monadaceae sified lderiales;o Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Alcaligen- family-unclas- -1178 ria";phylum;Betaproteobacteria;class;Burkho 0.00 0.00 0.00 0.00 aceae sified lderiales;o Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Oxalobac- family-unclas- -1241 ria";phylum;Betaproteobacteria;class;Burkho 0.00 0.00 0.00 0.00 teraceae sified lderiales;o Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Neisse- family-unclas- -1287 ria";phylum;Betaproteobacteria;class;Neisser 0.00 0.00 0.00 0.00 riaceae sified iales;orde Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Rhodocy- family-unclas- -1332 ria";phylum;Betaproteobacteria;class;Rhodo 0.00 0.00 0.00 0.00 claceae sified cyclales;or Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Helicobac- family-unclas- -1485 ria";phylum;Epsilonproteobacteria;class;Cam 0.00 0.00 0.00 0.00 teraceae sified pylobacte Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Campylo- family-unclas- -1480 ria";phylum;Epsilonproteobacteria;class;Cam 0.00 0.00 0.00 0.00 bacteraceae sified pylobacte Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Desulfovi- family-unclas- -1408 ria";phylum;Deltaproteobacteria;class;Desulf 0.00 0.00 0.00 0.00 brionaceae sified ovibrional Root;rootrank;Bacteria;domain;"Fusobacteri unclassified_ "Fusobac- family-unclas- -793 a";phylum;"Fusobacteria";class;"Fusobacteria 0.01 0.00 0.01 0.00 teriaceae" sified les";order Root;rootrank;Bacteria;domain;"Actinobacte unclassified_Coriobac- family-unclas- -366 ria";phylum;Actinobacteria;class;Coriobacte 0.06 0.02 0.05 0.04 teriaceae sified ridae;subcl Root;rootrank;Bacteria;domain;"Actinobacte unclassified_Bifidobac- family-unclas- -355 ria";phylum;Actinobacteria;class;Actinobacte 0.00 0.00 0.02 0.00 teriaceae sified ridae;subc Root;rootrank;Bacteria;domain;"Actinobacte unclassified_Propioni- family-unclas- -265 ria";phylum;Actinobacteria;class;Actinobacte 0.00 0.00 0.00 0.00 bacteriaceae sified ridae;subc Root;rootrank;Bacteria;domain;"Actinobacte unclassified_Microbac- family-unclas- -155 ria";phylum;Actinobacteria;class;Actinobacte 0.00 0.00 0.00 0.00 teriaceae sified ridae;subc Root;rootrank;Bacteria;domain;"Spirochaete unclassified_Spiro- family-unclas- -1896 s";phylum;Spirochaetes;class;Spirochaetales; 0.00 0.00 0.00 0.00 chaetaceae sified order;Spir Root;rootrank;Bacteria;domain;"Synergistete unclassified_Syner- family-unclas- -1910 s";phylum;Synergistia;class;Synergistales;ord 0.00 0.00 0.00 0.00 gistaceae sified er;Synergi Root;rootrank;Bacteria;domain;Cyanobacter unclassified_Chloro- family-unclas- -2715 ia/Chloroplast;phylum;Chloroplast;class;Chl 0.00 0.00 0.00 0.00 plast sified oroplast;fam Root;rootrank;Archaea;domain;"Crenarchae unclassified_Pyrodic- family-unclas- -1986 ota";phylum;Thermoprotei;class;Desulfuroco 0.00 0.00 0.00 0.00 tiaceae sified ccales;orde Root;rootrank;Bacteria;domain;"Bacteroidet 451 es";phylum;"Bacteroidia";class;"Bacteroidales Prevotella genus 17.52 25.14 20.62 21.04 ";order;"P
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Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc Root;rootrank;Bacteria;domain;"Bacteroidet 449 es";phylum;"Bacteroidia";class;"Bacteroidales Hallella genus 2.86 3.52 6.33 6.18 ";order;"P Root;rootrank;Bacteria;domain;"Bacteroidet 452 es";phylum;"Bacteroidia";class;"Bacteroidales Xylanibacter genus 0.39 0.43 0.49 0.41 ";order;"P Root;rootrank;Bacteria;domain;"Bacteroidet 450 es";phylum;"Bacteroidia";class;"Bacteroidales Paraprevotella genus 0.11 0.04 0.18 0.23 ";order;"P Root;rootrank;Bacteria;domain;"Bacteroidet 437 es";phylum;"Bacteroidia";class;"Bacteroidales Barnesiella genus 4.39 4.83 6.09 3.98 ";order;"P Root;rootrank;Bacteria;domain;"Bacteroidet 443 es";phylum;"Bacteroidia";class;"Bacteroidales Parabacteroides genus 0.37 0.14 0.27 0.24 ";order;"P Root;rootrank;Bacteria;domain;"Bacteroidet 447 es";phylum;"Bacteroidia";class;"Bacteroidales Tannerella genus 0.13 0.12 0.57 0.34 ";order;"P Root;rootrank;Bacteria;domain;"Bacteroidet 438 es";phylum;"Bacteroidia";class;"Bacteroidales Butyricimonas genus 0.10 0.05 0.10 0.02 ";order;"P Root;rootrank;Bacteria;domain;"Bacteroidet 440 es";phylum;"Bacteroidia";class;"Bacteroidales Odoribacter genus 0.01 0.00 0.02 0.00 ";order;"P Root;rootrank;Bacteria;domain;"Bacteroidet 442 es";phylum;"Bacteroidia";class;"Bacteroidales Paludibacter genus 0.00 0.00 0.00 0.00 ";order;"P Root;rootrank;Bacteria;domain;"Bacteroidet 444 es";phylum;"Bacteroidia";class;"Bacteroidales Petrimonas genus 0.00 0.00 0.00 0.00 ";order;"P Root;rootrank;Bacteria;domain;"Bacteroidet 446 es";phylum;"Bacteroidia";class;"Bacteroidales Proteiniphilum genus 0.00 0.00 0.00 0.00 ";order;"P Root;rootrank;Bacteria;domain;"Bacteroidet 455 es";phylum;"Bacteroidia";class;"Bacteroidales Rikenella genus 0.02 0.02 0.01 0.01 ";order;"R Root;rootrank;Bacteria;domain;"Bacteroidet 454 es";phylum;"Bacteroidia";class;"Bacteroidales Alistipes genus 0.00 0.00 0.00 0.00 ";order;"R Root;rootrank;Bacteria;domain;"Bacteroidet 429 es";phylum;"Bacteroidia";class;"Bacteroidales Anaerorhabdus genus 0.05 0.10 0.02 0.02 ";order;Ba Root;rootrank;Bacteria;domain;"Bacteroidet 430 es";phylum;"Bacteroidia";class;"Bacteroidales Bacteroides genus 0.22 0.11 0.19 0.08 ";order;Ba Root;rootrank;Bacteria;domain;"Bacteroidet 434 es";phylum;"Bacteroidia";class;"Bacteroidales Anaerophaga genus 0.01 0.01 0.00 0.00 ";order;"M Root;rootrank;Bacteria;domain;"Bacteroidet 433 es";phylum;"Bacteroidia";class;"Bacteroidales Alkaliflexus genus 0.00 0.00 0.00 0.00 ";order;"M Root;rootrank;Bacteria;domain;"Bacteroidet 457 es";phylum;"Bacteroidia";class;"Bacteroidales Phocaeicola genus 0.00 0.00 0.00 0.00 ";order;"B Root;rootrank;Bacteria;domain;"Bacteroidet 576 es";phylum;"Sphingobacteria";class;"Sphingo Hydrotalea genus 0.00 0.00 0.00 0.00 bacteriales Root;rootrank;Bacteria;domain;"Bacteroidet 581 es";phylum;"Sphingobacteria";class;"Sphingo Sediminibacterium genus 0.00 0.00 0.00 0.00 bacteriales
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Journal of Veterinary Science & Animal Husbandry 16
Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc Root;rootrank;Bacteria;domain;"Bacteroidet 575 es";phylum;"Sphingobacteria";class;"Sphingo Gracilimonas genus 0.00 0.00 0.00 0.00 bacteriales Root;rootrank;Bacteria;domain;"Bacteroidet 611 es";phylum;"Sphingobacteria";class;"Sphingo Meniscus genus 0.00 0.00 0.00 0.00 bacteriales Root;rootrank;Bacteria;domain;"Bacteroidet 619 es";phylum;"Sphingobacteria";class;"Sphingo Siphonobacter genus 0.00 0.00 0.00 0.00 bacteriales Root;rootrank;Bacteria;domain;"Bacteroidet Pseudosphingobacte- 654 es";phylum;"Sphingobacteria";class;"Sphingo genus 0.00 0.00 0.00 0.00 rium bacteriales Root;rootrank;Bacteria;domain;"Bacteroidet 650 es";phylum;"Sphingobacteria";class;"Sphingo Nubsella genus 0.00 0.00 0.00 0.00 bacteriales Root;rootrank;Bacteria;domain;"Bacteroidet 532 es";phylum;Flavobacteria;class;"Flavobacteri Ornithobacterium genus 0.00 0.00 0.00 0.00 ales";order Root;rootrank;Bacteria;domain;"Bacteroidet 477 es";phylum;Flavobacteria;class;"Flavobacteri Bergeyella genus 0.00 0.00 0.00 0.00 ales";order Root;rootrank;Bacteria;domain;"Bactero 660 idetes";phylum;"Bacteroidetes"_incertae_ Prolixibacter genus 0.00 0.00 0.00 0.00 sedis;class;Prolixi Root;rootrank;Bacteria;domain;Firmicutes;p 2521 hylum;Negativicutes;class;Selenomonadales; Schwartzia genus 0.15 0.04 0.03 0.01 order;Veillo Root;rootrank;Bacteria;domain;Firmicutes;p 2527 hylum;Negativicutes;class;Selenomonadales; Allisonella genus 1.98 1.91 0.03 0.02 order;Veillo Root;rootrank;Bacteria;domain;Firmicutes;p 2526 hylum;Negativicutes;class;Selenomonadales; Megasphaera genus 0.75 0.29 0.17 0.20 order;Veillo Root;rootrank;Bacteria;domain;Firmicutes;p 2661 hylum;Negativicutes;class;Selenomonadales; Mitsuokella genus 0.46 0.43 0.02 0.02 order;Veillo Root;rootrank;Bacteria;domain;Firmicutes;p 2529 hylum;Negativicutes;class;Selenomonadales; Veillonella genus 0.07 0.00 0.00 0.00 order;Veillo Root;rootrank;Bacteria;domain;Firmicutes;p 2520 hylum;Negativicutes;class;Selenomonadales; Anaerovibrio genus 0.24 0.01 0.02 0.02 order;Veillo Root;rootrank;Bacteria;domain;Firmicutes;p 2517 hylum;Negativicutes;class;Selenomonadales; Selenomonas genus 0.33 0.22 0.01 0.01 order;Veillo Root;rootrank;Bacteria;domain;Firmicutes;p 2528 hylum;Negativicutes;class;Selenomonadales; Dialister genus 0.14 0.05 0.01 0.07 order;Veillo Root;rootrank;Bacteria;domain;Firmicutes;p 2525 hylum;Negativicutes;class;Selenomonadales; Anaeroglobus genus 0.01 0.00 0.00 0.00 order;Veillo Root;rootrank;Bacteria;domain;Firmicutes;p 2516 hylum;Negativicutes;class;Selenomonadales; Centipeda genus 0.00 0.00 0.00 0.00 order;Veillo Root;rootrank;Bacteria;domain;Firmicutes;p 2509 hylum;Negativicutes;class;Selenomonadales; Anaerosinus genus 0.00 0.00 0.00 0.00 order;Veillo Root;rootrank;Bacteria;domain;Firmicutes;p 2523 hylum;Negativicutes;class;Selenomonadales; Zymophilus genus 0.00 0.00 0.00 0.00 order;Veillo
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15 Journal of Veterinary Science & Animal Husbandry
Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc Root;rootrank;Bacteria;domain;Firmicutes;p 2662 hylum;Negativicutes;class;Selenomonadales; Negativicoccus genus 0.00 0.00 0.00 0.00 order;Veillo Root;rootrank;Bacteria;domain;Firmicutes;p 2508 hylum;Negativicutes;class;Selenomonadales; Dendrosporobacter genus 0.00 0.00 0.00 0.00 order;Veillo Root;rootrank;Bacteria;domain;Firmicutes;p 2504 hylum;Negativicutes;class;Selenomonadales; Acetonema genus 0.00 0.00 0.00 0.00 order;Veillo Root;rootrank;Bacteria;domain;Firmicutes;p 2514 hylum;Negativicutes;class;Selenomonadales; Acidaminococcus genus 7.91 5.39 0.04 0.03 order;Acida Root;rootrank;Bacteria;domain;Firmicutes;p 2513 hylum;Negativicutes;class;Selenomonadales; Phascolarctobacterium genus 0.84 0.88 0.90 0.70 order;Acida Root;rootrank;Bacteria;domain;Firmicutes;p 2515 hylum;Negativicutes;class;Selenomonadales; Succinispira genus 0.00 0.00 0.00 0.00 order;Acida Root;rootrank;Bacteria;domain;Firmicutes;p 2512 hylum;Negativicutes;class;Selenomonadales; Succiniclasticum genus 0.00 0.00 0.00 0.00 order;Acida Root;rootrank;Bacteria;domain;Firmicutes;p Erysipelotrichaceae_in- 2672 hylum;Erysipelotrichia;class;Erysipelotrichal genus 2.11 1.61 0.35 0.63 certae_sedis es;order;Ery Root;rootrank;Bacteria;domain;Firmicutes;p 2563 hylum;Erysipelotrichia;class;Erysipelotrichal Bulleidia genus 0.18 0.33 0.08 0.10 es;order;Ery Root;rootrank;Bacteria;domain;Firmicutes;p 2610 hylum;Erysipelotrichia;class;Erysipelotrichal Sharpea genus 0.01 0.03 0.00 0.01 es;order;Ery Root;rootrank;Bacteria;domain;Firmicutes;p 2566 hylum;Erysipelotrichia;class;Erysipelotrichal Holdemania genus 0.15 0.32 0.03 0.02 es;order;Ery Root;rootrank;Bacteria;domain;Firmicutes;p 2564 hylum;Erysipelotrichia;class;Erysipelotrichal Catenibacterium genus 0.03 0.01 0.14 0.17 es;order;Ery Root;rootrank;Bacteria;domain;Firmicutes;p 2562 hylum;Erysipelotrichia;class;Erysipelotrichal Allobaculum genus 0.02 0.01 0.00 0.02 es;order;Ery Root;rootrank;Bacteria;domain;Firmicutes;p 2567 hylum;Erysipelotrichia;class;Erysipelotrichal Solobacterium genus 0.00 0.00 0.00 0.00 es;order;Ery Root;rootrank;Bacteria;domain;Firmicutes;p 2671 hylum;Erysipelotrichia;class;Erysipelotrichal Clostridium XVIII genus 0.00 0.00 0.00 0.00 es;order;Ery Root;rootrank;Bacteria;domain;Firmicutes;p 2565 hylum;Erysipelotrichia;class;Erysipelotrichal Coprobacillus genus 0.00 0.00 0.00 0.00 es;order;Ery Root;rootrank;Bacteria;domain;Firmicutes;p 2561 hylum;Erysipelotrichia;class;Erysipelotrichal Erysipelothrix genus 0.00 0.00 0.00 0.00 es;order;Ery Root;rootrank;Bacteria;domain;Firmicutes;p 2568 hylum;Erysipelotrichia;class;Erysipelotrichal Turicibacter genus 0.00 0.00 0.00 0.00 es;order;Ery Root;rootrank;Bacteria;domain;Firmicutes;p 2449 hylum;Clostridia;class;Clostridiales;order;La Roseburia genus 1.38 5.44 2.24 2.06 chnospirace Root;rootrank;Bacteria;domain;Firmicutes;p 2463 hylum;Clostridia;class;Clostridiales;order;La Coprococcus genus 1.01 0.87 0.53 0.50 chnospirace
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Journal of Veterinary Science & Animal Husbandry 18
Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc Root;rootrank;Bacteria;domain;Firmicutes;p 2454 hylum;Clostridia;class;Clostridiales;order;La Dorea genus 2.47 1.56 0.71 0.60 chnospirace Root;rootrank;Bacteria;domain;Firmicutes;p Lachnospiracea_incer- 2678 hylum;Clostridia;class;Clostridiales;order;La genus 0.87 1.44 1.58 1.16 tae_sedis chnospirace Root;rootrank;Bacteria;domain;Firmicutes;p 2626 hylum;Clostridia;class;Clostridiales;order;La Blautia genus 0.08 0.20 0.84 0.70 chnospirace Root;rootrank;Bacteria;domain;Firmicutes;p 2462 hylum;Clostridia;class;Clostridiales;order;La Lachnospira genus 0.06 0.06 0.09 0.04 chnospirace Root;rootrank;Bacteria;domain;Firmicutes;p 2619 hylum;Clostridia;class;Clostridiales;order;La Lactonifactor genus 0.03 0.04 0.05 0.04 chnospirace Root;rootrank;Bacteria;domain;Firmicutes;p 2452 hylum;Clostridia;class;Clostridiales;order;La Syntrophococcus genus 0.01 0.02 0.02 0.00 chnospirace Root;rootrank;Bacteria;domain;Firmicutes;p 2464 hylum;Clostridia;class;Clostridiales;order;La Acetitomaculum genus 0.00 0.00 0.00 0.00 chnospirace Root;rootrank;Bacteria;domain;Firmicutes;p 2448 hylum;Clostridia;class;Clostridiales;order;La Lachnobacterium genus 0.01 0.05 0.03 0.03 chnospirace Root;rootrank;Bacteria;domain;Firmicutes;p 2458 hylum;Clostridia;class;Clostridiales;order;La Parasporobacterium genus 0.02 0.00 0.00 0.00 chnospirace Root;rootrank;Bacteria;domain;Firmicutes;p 2638 hylum;Clostridia;class;Clostridiales;order;La Robinsoniella genus 0.01 0.01 0.02 0.02 chnospirace Root;rootrank;Bacteria;domain;Firmicutes;p 2630 hylum;Clostridia;class;Clostridiales;order;La Howardella genus 0.01 0.00 0.03 0.00 chnospirace Root;rootrank;Bacteria;domain;Firmicutes;p 2456 hylum;Clostridia;class;Clostridiales;order;La Oribacterium genus 0.01 0.34 0.00 0.02 chnospirace Root;rootrank;Bacteria;domain;Firmicutes;p 2447 hylum;Clostridia;class;Clostridiales;order;La Shuttleworthia genus 0.00 0.00 0.00 0.00 chnospirace Root;rootrank;Bacteria;domain;Firmicutes;p 2676 hylum;Clostridia;class;Clostridiales;order;La Clostridium XlVa genus 0.02 0.27 0.06 0.13 chnospirace Root;rootrank;Bacteria;domain;Firmicutes;p 2446 hylum;Clostridia;class;Clostridiales;order;La Pseudobutyrivibrio genus 0.01 0.00 0.01 0.00 chnospirace Root;rootrank;Bacteria;domain;Firmicutes;p 2677 hylum;Clostridia;class;Clostridiales;order;La Clostridium XlVb genus 0.00 0.00 0.06 0.02 chnospirace Root;rootrank;Bacteria;domain;Firmicutes;p 2461 hylum;Clostridia;class;Clostridiales;order;La Catonella genus 0.00 0.00 0.00 0.00 chnospirace Root;rootrank;Bacteria;domain;Firmicutes;p 2459 hylum;Clostridia;class;Clostridiales;order;La Anaerostipes genus 0.00 0.00 0.02 0.01 chnospirace Root;rootrank;Bacteria;domain;Firmicutes;p 2637 hylum;Clostridia;class;Clostridiales;order;La Marvinbryantia genus 0.00 0.00 0.00 0.00 chnospirace Root;rootrank;Bacteria;domain;Firmicutes;p 2457 hylum;Clostridia;class;Clostridiales;order;La Sporobacterium genus 0.00 0.00 0.00 0.00 chnospirace
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17 Journal of Veterinary Science & Animal Husbandry
Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc Root;rootrank;Bacteria;domain;Firmicutes;p 2455 hylum;Clostridia;class;Clostridiales;order;La Hespellia genus 0.00 0.00 0.00 0.00 chnospirace Root;rootrank;Bacteria;domain;Firmicutes;p 2450 hylum;Clostridia;class;Clostridiales;order;La Moryella genus 0.00 0.00 0.00 0.00 chnospirace Root;rootrank;Bacteria;domain;Firmicutes;p 2451 hylum;Clostridia;class;Clostridiales;order;La Johnsonella genus 0.00 0.00 0.00 0.00 chnospirace Root;rootrank;Bacteria;domain;Firmicutes;p 2460 hylum;Clostridia;class;Clostridiales;order;La Butyrivibrio genus 0.00 0.01 0.00 0.00 chnospirace Root;rootrank;Bacteria;domain;Firmicutes;p 2485 hylum;Clostridia;class;Clostridiales;order;Ru Faecalibacterium genus 5.09 3.23 1.57 0.45 minococcac Root;rootrank;Bacteria;domain;Firmicutes;p 2639 hylum;Clostridia;class;Clostridiales;order;Ru Oscillibacter genus 2.60 0.32 1.15 0.83 minococcac Root;rootrank;Bacteria;domain;Firmicutes;p 2682 hylum;Clostridia;class;Clostridiales;order;Ru Clostridium IV genus 0.04 0.36 0.24 0.27 minococcac Root;rootrank;Bacteria;domain;Firmicutes;p 2494 hylum;Clostridia;class;Clostridiales;order;Ru Sporobacter genus 0.12 0.08 0.17 0.13 minococcac Root;rootrank;Bacteria;domain;Firmicutes;p 2615 hylum;Clostridia;class;Clostridiales;order;Ru Butyricicoccus genus 0.03 0.02 0.41 0.25 minococcac Root;rootrank;Bacteria;domain;Firmicutes;p 2634 hylum;Clostridia;class;Clostridiales;order;Ru Pseudoflavonifractor genus 0.05 0.01 0.05 0.04 minococcac Root;rootrank;Bacteria;domain;Firmicutes;p 2490 hylum;Clostridia;class;Clostridiales;order;Ru Ethanoligenens genus 0.05 0.06 0.05 0.05 minococcac Root;rootrank;Bacteria;domain;Firmicutes;p 2489 hylum;Clostridia;class;Clostridiales;order;Ru Acetanaerobacterium genus 0.04 0.07 0.06 0.06 minococcac Root;rootrank;Bacteria;domain;Firmicutes;p 2491 hylum;Clostridia;class;Clostridiales;order;Ru Anaerotruncus genus 0.00 0.01 0.01 0.02 minococcac Root;rootrank;Bacteria;domain;Firmicutes;p 2629 hylum;Clostridia;class;Clostridiales;order;Ru Flavonifractor genus 0.13 0.09 0.21 0.18 minococcac Root;rootrank;Bacteria;domain;Firmicutes;p 2487 hylum;Clostridia;class;Clostridiales;order;Ru Subdoligranulum genus 0.01 0.01 0.01 0.02 minococcac Root;rootrank;Bacteria;domain;Firmicutes;p 2493 hylum;Clostridia;class;Clostridiales;order;Ru Papillibacter genus 0.00 0.00 0.02 0.00 minococcac Root;rootrank;Bacteria;domain;Firmicutes;p 2492 hylum;Clostridia;class;Clostridiales;order;Ru Ruminococcus genus 0.02 0.32 0.25 0.67 minococcac Root;rootrank;Bacteria;domain;Firmicutes;p 2486 hylum;Clostridia;class;Clostridiales;order;Ru Acetivibrio genus 0.00 0.01 0.06 0.08 minococcac Root;rootrank;Bacteria;domain;Firmicutes;p 2488 hylum;Clostridia;class;Clostridiales;order;Ru Anaerofilum genus 0.00 0.00 0.00 0.00 minococcac Root;rootrank;Bacteria;domain;Firmicutes;p 2622 hylum;Clostridia;class;Clostridiales;order;Ru Saccharofermentans genus 0.00 0.01 0.00 0.02 minococcac
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Journal of Veterinary Science & Animal Husbandry 20
Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc Root;rootrank;Bacteria;domain;Firmicutes;p 2681 hylum;Clostridia;class;Clostridiales;order;Ru Clostridium III genus 0.00 0.00 0.00 0.00 minococcac Root;rootrank;Bacteria;domain;Firmicutes;p Hydrogenoanaerobac- 2644 hylum;Clostridia;class;Clostridiales;order;Ru genus 0.00 0.00 0.00 0.00 terium minococcac Root;rootrank;Bacteria;domain;Firmicutes;p 2496 hylum;Clostridia;class;Clostridiales;order;Ru Fastidiosipila genus 0.00 0.00 0.00 0.00 minococcac Root;rootrank;Bacteria;domain;Firmicutes;p 2614 hylum;Clostridia;class;Clostridiales;order;Cl Anaerosporobacter genus 0.01 0.01 0.00 0.00 ostridiaceae Root;rootrank;Bacteria;domain;Firmicutes;p Clostridium sensu 2380 hylum;Clostridia;class;Clostridiales;order;Cl genus 0.06 0.16 0.80 2.27 stricto ostridiaceae Root;rootrank;Bacteria;domain;Firmicutes;p 2378 hylum;Clostridia;class;Clostridiales;order;Cl Sarcina genus 0.01 0.01 0.10 0.17 ostridiaceae Root;rootrank;Bacteria;domain;Firmicutes;p 2379 hylum;Clostridia;class;Clostridiales;order;Cl Anaerobacter genus 0.01 0.03 0.25 0.66 ostridiaceae Root;rootrank;Bacteria;domain;Firmicutes;p 2435 hylum;Clostridia;class;Clostridiales;order;Clo Mogibacterium genus 0.22 0.11 0.10 0.02 stridiales_In Root;rootrank;Bacteria;domain;Firmicutes;p 2434 hylum;Clostridia;class;Clostridiales;order;Clo Anaerovorax genus 0.04 0.04 0.15 0.42 stridiales_In Root;rootrank;Bacteria;domain;Firmicutes;p 2679 hylum;Clostridia;class;Clostridiales;order;Pe Clostridium XI genus 0.02 0.02 0.26 0.27 ptostreptoc Root;rootrank;Bacteria;domain;Firmicutes;p 2481 hylum;Clostridia;class;Clostridiales;order;Pe Peptostreptococcus genus 0.01 0.00 0.04 0.00 ptostreptoc Root;rootrank;Bacteria;domain;Firmicutes;p 2480 hylum;Clostridia;class;Clostridiales;order;Pe Sporacetigenium genus 0.00 0.00 0.06 0.06 ptostreptoc Root;rootrank;Bacteria;domain;Firmicutes;p 2397 hylum;Clostridia;class;Clostridiales;order;Eu Eubacterium genus 0.02 0.01 0.53 0.26 bacteriaceae Root;rootrank;Bacteria;domain;Firmicutes;p 2398 hylum;Clostridia;class;Clostridiales;order;Eu Pseudoramibacter genus 0.00 0.00 0.01 0.00 bacteriaceae Root;rootrank;Bacteria;domain;Firmicutes;p 2399 hylum;Clostridia;class;Clostridiales;order;Eu Anaerofustis genus 0.00 0.00 0.00 0.00 bacteriaceae Root;rootrank;Bacteria;domain;Firmicutes;p 2635 hylum;Clostridia;class;Clostridiales;order;Eu Alkalibaculum genus 0.00 0.00 0.00 0.00 bacteriaceae Root;rootrank;Bacteria;domain;Firmicutes;p 2421 hylum;Clostridia;class;Clostridiales;order;Clo Finegoldia genus 0.00 0.00 0.00 0.00 stridiales_In Root;rootrank;Bacteria;domain;Firmicutes;p 2423 hylum;Clostridia;class;Clostridiales;order;Clo Peptoniphilus genus 0.00 0.00 0.00 0.00 stridiales_In Root;rootrank;Bacteria;domain;Firmicutes;p 2418 hylum;Clostridia;class;Clostridiales;order;Clo Anaerococcus genus 0.00 0.00 0.00 0.00 stridiales_In Root;rootrank;Bacteria;domain;Firmicutes;p 2477 hylum;Clostridia;class;Clostridiales;order;Pe Peptococcus genus 0.00 0.00 0.02 0.01 ptococcacea
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21 Journal of Veterinary Science & Animal Husbandry
Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc Root;rootrank;Bacteria;domain;Firmicutes;p 2472 hylum;Clostridia;class;Clostridiales;order;Pe Dehalobacter genus 0.00 0.00 0.00 0.00 ptococcacea Root;rootrank;Bacteria;domain;Firmicutes;p 2430 hylum;Clostridia;class;Clostridiales;order;Clo Acidaminobacter genus 0.00 0.00 0.00 0.00 stridiales_In Root;rootrank;Bacteria;domain;Firmicutes;p 2432 hylum;Clostridia;class;Clostridiales;order;Clo Guggenheimella genus 0.00 0.00 0.00 0.00 stridiales_In Root;rootrank;Bacteria;domain;Firmicutes;p 2403 hylum;Clostridia;class;Clostridiales;order;Gr Gracilibacter genus 0.00 0.00 0.00 0.00 acilibacterac Root;rootrank;Bacteria;domain;Firmicutes;p 2620 hylum;Clostridia;class;Clostridiales;order;Gr Lutispora genus 0.00 0.00 0.00 0.00 acilibacterac Root;rootrank;Bacteria;domain;Firmicutes;p 2631 hylum;Clostridia;class;Clostridiales;order;In Murdochiella genus 0.00 0.00 0.00 0.00 certae Sedis Root;rootrank;Bacteria;domain;Firmicutes;p 2675 hylum;Clostridia;class;Clostridiales;order;Clo Proteiniborus genus 0.00 0.00 0.00 0.00 stridiales_in Root;rootrank;Bacteria;domain;Firmicutes;p 2546 hylum;Clostridia;class;Thermoanaerobactera Thermoanaerobacter genus 0.00 0.00 0.00 0.00 les;order;T Root;rootrank;Bacteria;domain;Firmicutes;p 2364 hylum;Bacilli;class;Lactobacillales;order;Lact Lactobacillus genus 0.54 0.43 5.91 9.41 obacillaceae Root;rootrank;Bacteria;domain;Firmicutes;p 2366 hylum;Bacilli;class;Lactobacillales;order;Lact Paralactobacillus genus 0.01 0.02 0.13 0.14 obacillaceae Root;rootrank;Bacteria;domain;Firmicutes;p 2365 hylum;Bacilli;class;Lactobacillales;order;Lact Pediococcus genus 0.00 0.00 0.00 0.00 obacillaceae Root;rootrank;Bacteria;domain;Firmicutes;p 2372 hylum;Bacilli;class;Lactobacillales;order;Stre Streptococcus genus 0.15 0.00 1.02 0.04 ptococcacea Root;rootrank;Bacteria;domain;Firmicutes;p 2374 hylum;Bacilli;class;Lactobacillales;order;Stre Lactovum genus 0.00 0.00 0.01 0.01 ptococcacea Root;rootrank;Bacteria;domain;Firmicutes;p 2373 hylum;Bacilli;class;Lactobacillales;order;Stre Lactococcus genus 0.00 0.00 0.00 0.00 ptococcacea Root;rootrank;Bacteria;domain;Firmicutes;p 2343 hylum;Bacilli;class;Lactobacillales;order;Carn Catellicoccus genus 0.00 0.00 0.00 0.00 obacteriace Root;rootrank;Bacteria;domain;Firmicutes;p 2349 hylum;Bacilli;class;Lactobacillales;order;Carn Alloiococcus genus 0.00 0.00 0.00 0.00 obacteriace Root;rootrank;Bacteria;domain;Firmicutes;p 2353 hylum;Bacilli;class;Lactobacillales;order;Carn Isobaculum genus 0.00 0.00 0.00 0.00 obacteriace Root;rootrank;Bacteria;domain;Firmicutes;p 2344 hylum;Bacilli;class;Lactobacillales;order;Carn Atopobacter genus 0.00 0.00 0.00 0.00 obacteriace Root;rootrank;Bacteria;domain;Firmicutes;p 2355 hylum;Bacilli;class;Lactobacillales;order;Carn Desemzia genus 0.00 0.00 0.00 0.00 obacteriace Root;rootrank;Bacteria;domain;Firmicutes;p 2352 hylum;Bacilli;class;Lactobacillales;order;Carn Atopococcus genus 0.00 0.00 0.00 0.00 obacteriace
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Journal of Veterinary Science & Animal Husbandry 22
Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc Root;rootrank;Bacteria;domain;Firmicutes;p 2607 hylum;Bacilli;class;Lactobacillales;order;Carn Lacticigenium genus 0.00 0.00 0.00 0.00 obacteriace Root;rootrank;Bacteria;domain;Firmicutes;p 2347 hylum;Bacilli;class;Lactobacillales;order;Carn Dolosigranulum genus 0.00 0.00 0.00 0.00 obacteriace Root;rootrank;Bacteria;domain;Firmicutes;p 2348 hylum;Bacilli;class;Lactobacillales;order;Carn Atopostipes genus 0.00 0.00 0.00 0.00 obacteriace Root;rootrank;Bacteria;domain;Firmicutes;p 2608 hylum;Bacilli;class;Lactobacillales;order;Carn Pisciglobus genus 0.00 0.00 0.00 0.00 obacteriace Root;rootrank;Bacteria;domain;Firmicutes;p 2358 hylum;Bacilli;class;Lactobacillales;order;Ente Pilibacter genus 0.00 0.00 0.04 0.00 rococcacea Root;rootrank;Bacteria;domain;Firmicutes;p 2362 hylum;Bacilli;class;Lactobacillales;order;Ente Enterococcus genus 0.00 0.00 0.00 0.00 rococcacea Root;rootrank;Bacteria;domain;Firmicutes;p 2360 hylum;Bacilli;class;Lactobacillales;order;Ente Melissococcus genus 0.00 0.00 0.00 0.00 rococcacea Root;rootrank;Bacteria;domain;Firmicutes;p 2609 hylum;Bacilli;class;Lactobacillales;order;Ente Bavariicoccus genus 0.00 0.00 0.00 0.00 rococcacea Root;rootrank;Bacteria;domain;Firmicutes;p 2361 hylum;Bacilli;class;Lactobacillales;order;Ente Vagococcus genus 0.00 0.00 0.00 0.00 rococcacea Root;rootrank;Bacteria;domain;Firmicutes;p 2340 hylum;Bacilli;class;Lactobacillales;order;Aer Abiotrophia genus 0.00 0.00 0.00 0.00 ococcaceae; Root;rootrank;Bacteria;domain;Firmicutes;p 2337 hylum;Bacilli;class;Lactobacillales;order;Aer Globicatella genus 0.00 0.00 0.00 0.00 ococcaceae; Root;rootrank;Bacteria;domain;Firmicutes;p 2368 hylum;Bacilli;class;Lactobacillales;order;Leuc Weissella genus 0.00 0.00 0.00 0.00 onostocace Root;rootrank;Bacteria;domain;Firmicutes;p 2583 hylum;Bacilli;class;Bacillales;order;Planococ Psychrobacillus genus 0.00 0.04 0.00 0.00 caceae;famil Root;rootrank;Bacteria;domain;Firmicutes;p 2596 hylum;Bacilli;class;Bacillales;order;Planococ Solibacillus genus 0.00 0.00 0.00 0.00 caceae;famil Root;rootrank;Bacteria;domain;Firmicutes;p 2578 hylum;Bacilli;class;Bacillales;order;Planococ Lysinibacillus genus 0.00 0.79 0.00 0.00 caceae;famil Root;rootrank;Bacteria;domain;Firmicutes;p Planococcaceae_incer- 2680 hylum;Bacilli;class;Bacillales;order;Planococ genus 0.00 0.01 0.00 0.00 tae_sedis caceae;famil Root;rootrank;Bacteria;domain;Firmicutes;p 2595 hylum;Bacilli;class;Bacillales;order;Planococ Rummeliibacillus genus 0.00 0.00 0.00 0.00 caceae;famil Root;rootrank;Bacteria;domain;Firmicutes;p 2599 hylum;Bacilli;class;Bacillales;order;Planococ Bhargavaea genus 0.00 0.00 0.00 0.00 caceae;famil Root;rootrank;Bacteria;domain;Firmicutes;p 2600 hylum;Bacilli;class;Bacillales;order;Planococ Paenisporosarcina genus 0.00 0.00 0.00 0.00 caceae;famil Root;rootrank;Bacteria;domain;Firmicutes;p 2570 hylum;Bacilli;class;Bacillales;order;Bacillace Allobacillus genus 0.00 0.00 0.00 0.00 ae 2;family;A
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23 Journal of Veterinary Science & Animal Husbandry
Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc Root;rootrank;Bacteria;domain;Firmicutes;p 2577 hylum;Bacilli;class;Bacillales;order;Bacillace Halalkalibacillus genus 0.00 0.01 0.00 0.00 ae 2;family;H Root;rootrank;Bacteria;domain;Firmicutes;p 2286 hylum;Bacilli;class;Bacillales;order;Bacillace Paucisalibacillus genus 0.00 0.00 0.00 0.00 ae 2;family;P Root;rootrank;Bacteria;domain;Firmicutes;p 2586 hylum;Bacilli;class;Bacillales;order;Bacillace Salirhabdus genus 0.00 0.00 0.00 0.00 ae 2;family;S Root;rootrank;Bacteria;domain;Firmicutes;p 2589 hylum;Bacilli;class;Bacillales;order;Bacillace Streptohalobacillus genus 0.00 0.00 0.00 0.00 ae 2;family;S Root;rootrank;Bacteria;domain;Firmicutes;p 2268 hylum;Bacilli;class;Bacillales;order;Bacillace Bacillus genus 0.00 0.40 0.00 0.00 ae 1;family;B Root;rootrank;Bacteria;domain;Firmicutes;p 2576 hylum;Bacilli;class;Bacillales;order;Bacillace Falsibacillus genus 0.00 0.03 0.00 0.00 ae 1;family;F Root;rootrank;Bacteria;domain;Firmicutes;p 2569 hylum;Bacilli;class;Bacillales;order;Bacillace Aeribacillus genus 0.00 0.00 0.00 0.00 ae 1;family;A Root;rootrank;Bacteria;domain;Firmicutes;p 2266 hylum;Bacilli;class;Bacillales;order;Bacillace Geobacillus genus 0.00 0.00 0.00 0.00 ae 1;family;G Root;rootrank;Bacteria;domain;Firmicutes;p 2305 hylum;Bacilli;class;Bacillales;order;Paenibaci Aneurinibacillus genus 0.00 0.00 0.00 0.00 llaceae 2;fa Root;rootrank;Bacteria;domain;Firmicutes;p 2322 hylum;Bacilli;class;Bacillales;order;Staphyloc Staphylococcus genus 0.00 0.00 0.00 0.00 occaceae;fa Root;rootrank;Bacteria;domain;"Proteobacte 1651 ria";phylum;Gammaproteobacteria;class;"En Proteus genus 5.48 0.00 0.00 0.00 terobacter Root;rootrank;Bacteria;domain;"Proteobacte 1633 ria";phylum;Gammaproteobacteria;class;"En Escherichia/Shigella genus 2.60 0.03 0.72 0.02 terobacter Root;rootrank;Bacteria;domain;"Proteobacte 1627 ria";phylum;Gammaproteobacteria;class;"En Cosenzaea genus 0.30 0.00 0.00 0.00 terobacter Root;rootrank;Bacteria;domain;"Proteobacte 1639 ria";phylum;Gammaproteobacteria;class;"En Leclercia genus 0.01 0.00 0.00 0.00 terobacter Root;rootrank;Bacteria;domain;"Proteobacte 1657 ria";phylum;Gammaproteobacteria;class;"En Samsonia genus 0.00 0.00 0.00 0.00 terobacter Root;rootrank;Bacteria;domain;"Proteobacte 1642 ria";phylum;Gammaproteobacteria;class;"En Mangrovibacter genus 0.00 0.00 0.00 0.00 terobacter Root;rootrank;Bacteria;domain;"Proteobacte 1628 ria";phylum;Gammaproteobacteria;class;"En Cronobacter genus 0.00 0.00 0.00 0.00 terobacter Root;rootrank;Bacteria;domain;"Proteobacte 1650 ria";phylum;Gammaproteobacteria;class;"En Pragia genus 0.00 0.00 0.00 0.00 terobacter Root;rootrank;Bacteria;domain;"Proteobacte 1637 ria";phylum;Gammaproteobacteria;class;"En Klebsiella genus 0.00 0.00 0.00 0.00 terobacter Root;rootrank;Bacteria;domain;"Proteobacte 1649 ria";phylum;Gammaproteobacteria;class;"En Plesiomonas genus 0.00 0.00 0.00 0.00 terobacter
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Journal of Veterinary Science & Animal Husbandry 24
Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc Root;rootrank;Bacteria;domain;"Proteobacte 1667 ria";phylum;Gammaproteobacteria;class;"En Yokenella genus 0.00 0.00 0.00 0.00 terobacter Root;rootrank;Bacteria;domain;"Proteobacte 1635 ria";phylum;Gammaproteobacteria;class;"En Gibbsiella genus 0.00 0.00 0.00 0.00 terobacter Root;rootrank;Bacteria;domain;"Proteobacte 1653 ria";phylum;Gammaproteobacteria;class;"En Rahnella genus 0.00 0.00 0.00 0.00 terobacter Root;rootrank;Bacteria;domain;"Proteobacte 1644 ria";phylum;Gammaproteobacteria;class;"En Morganella genus 0.00 0.00 0.00 0.00 terobacter Root;rootrank;Bacteria;domain;"Proteobacte 1663 ria";phylum;Gammaproteobacteria;class;"En Trabulsiella genus 0.00 0.00 0.00 0.00 terobacter Root;rootrank;Bacteria;domain;"Proteobacte 1645 ria";phylum;Gammaproteobacteria;class;"En Obesumbacterium genus 0.00 0.00 0.00 0.00 terobacter Root;rootrank;Bacteria;domain;"Proteobacte 1625 ria";phylum;Gammaproteobacteria;class;"En Cedecea genus 0.00 0.00 0.00 0.00 terobacter Root;rootrank;Bacteria;domain;"Proteobacte 1631 ria";phylum;Gammaproteobacteria;class;"En Enterobacter genus 0.00 0.00 0.00 0.00 terobacter Root;rootrank;Bacteria;domain;"Proteobacte 1626 ria";phylum;Gammaproteobacteria;class;"En Citrobacter genus 0.00 0.00 0.00 0.00 terobacter Root;rootrank;Bacteria;domain;"Proteobacte 1640 ria";phylum;Gammaproteobacteria;class;"En Leminorella genus 0.00 0.00 0.00 0.00 terobacter Root;rootrank;Bacteria;domain;"Proteobacte 1646 ria";phylum;Gammaproteobacteria;class;"En Pantoea genus 0.00 0.00 0.00 0.00 terobacter Root;rootrank;Bacteria;domain;"Proteobacte 1519 ria";phylum;Gammaproteobacteria;class;Aer Succinivibrio genus 1.73 0.01 0.30 0.03 omonadal Root;rootrank;Bacteria;domain;"Proteobacte 1518 ria";phylum;Gammaproteobacteria;class;Aer Succinimonas genus 0.00 0.00 0.00 0.00 omonadal Root;rootrank;Bacteria;domain;"Proteobacte 1515 ria";phylum;Gammaproteobacteria;class;Aer Anaerobiospirillum genus 0.00 0.00 0.00 0.00 omonadal Root;rootrank;Bacteria;domain;"Proteobacte 1759 ria";phylum;Gammaproteobacteria;class;Pas Pasteurella genus 0.00 0.00 0.00 0.00 teurellales Root;rootrank;Bacteria;domain;"Proteobacte 1747 ria";phylum;Gammaproteobacteria;class;Pas Actinobacillus genus 0.00 0.00 0.00 0.00 teurellales Root;rootrank;Bacteria;domain;"Proteobacte 1751 ria";phylum;Gammaproteobacteria;class;Pas Bibersteinia genus 0.00 0.00 0.00 0.00 teurellales Root;rootrank;Bacteria;domain;"Proteobacte 1758 ria";phylum;Gammaproteobacteria;class;Pas Nicoletella genus 0.00 0.00 0.00 0.00 teurellales Root;rootrank;Bacteria;domain;"Proteobacte 1754 ria";phylum;Gammaproteobacteria;class;Pas Haemophilus genus 0.00 0.00 0.00 0.00 teurellales Root;rootrank;Bacteria;domain;"Proteobacte 1750 ria";phylum;Gammaproteobacteria;class;Pas Basfia genus 0.00 0.00 0.00 0.00 teurellales
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25 Journal of Veterinary Science & Animal Husbandry
Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc Root;rootrank;Bacteria;domain;"Proteobacte 1757 ria";phylum;Gammaproteobacteria;class;Pas Mannheimia genus 0.00 0.00 0.00 0.00 teurellales Root;rootrank;Bacteria;domain;"Proteobacte 1781 ria";phylum;Gammaproteobacteria;class;Pse Pseudomonas genus 0.00 0.00 0.00 0.00 udomonad Root;rootrank;Bacteria;domain;"Proteobacte 1773 ria";phylum;Gammaproteobacteria;class;Pse Azomonas genus 0.00 0.00 0.00 0.00 udomonad Root;rootrank;Bacteria;domain;"Proteobacte 1768 ria";phylum;Gammaproteobacteria;class;Pse Moraxella genus 0.00 0.00 0.00 0.00 udomonad Root;rootrank;Bacteria;domain;"Proteobacte 1764 ria";phylum;Gammaproteobacteria;class;Pse Acinetobacter genus 0.00 0.00 0.00 0.00 udomonad Root;rootrank;Bacteria;domain;"Proteobacte 917 ria";phylum;Alphaproteobacteria;class;Rhizo Gemmiger genus 0.81 0.84 1.04 0.64 biales;orde Root;rootrank;Bacteria;domain;"Proteobacte 914 ria";phylum;Alphaproteobacteria;class;Rhizo Devosia genus 0.00 0.00 0.00 0.00 biales;orde Root;rootrank;Bacteria;domain;"Proteobacte 918 ria";phylum;Alphaproteobacteria;class;Rhizo Hyphomicrobium genus 0.00 0.00 0.00 0.00 biales;orde Root;rootrank;Bacteria;domain;"Proteobacte 916 ria";phylum;Alphaproteobacteria;class;Rhizo Filomicrobium genus 0.00 0.00 0.00 0.00 biales;orde Root;rootrank;Bacteria;domain;"Proteobacte 946 ria";phylum;Alphaproteobacteria;class;Rhizo Mesorhizobium genus 0.00 0.00 0.00 0.00 biales;orde Root;rootrank;Bacteria;domain;"Proteobacte 941 ria";phylum;Alphaproteobacteria;class;Rhizo Aminobacter genus 0.00 0.00 0.00 0.00 biales;orde Root;rootrank;Bacteria;domain;"Proteobacte 943 ria";phylum;Alphaproteobacteria;class;Rhizo Chelativorans genus 0.00 0.00 0.00 0.00 biales;orde Root;rootrank;Bacteria;domain;"Proteobacte 945 ria";phylum;Alphaproteobacteria;class;Rhizo Hoeflea genus 0.00 0.00 0.00 0.00 biales;orde Root;rootrank;Bacteria;domain;"Proteobacte 949 ria";phylum;Alphaproteobacteria;class;Rhizo Pseudaminobacter genus 0.00 0.00 0.00 0.00 biales;orde Root;rootrank;Bacteria;domain;"Proteobacte 892 ria";phylum;Alphaproteobacteria;class;Rhizo Bradyrhizobium genus 0.00 0.00 0.00 0.00 biales;orde Root;rootrank;Bacteria;domain;"Proteobacte 888 ria";phylum;Alphaproteobacteria;class;Rhizo Agromonas genus 0.00 0.00 0.00 0.00 biales;orde Root;rootrank;Bacteria;domain;"Proteobacte 889 ria";phylum;Alphaproteobacteria;class;Rhizo Balneimonas genus 0.00 0.00 0.00 0.00 biales;orde Root;rootrank;Bacteria;domain;"Proteobacte 891 ria";phylum;Alphaproteobacteria;class;Rhizo Bosea genus 0.00 0.00 0.00 0.00 biales;orde Root;rootrank;Bacteria;domain;"Proteobacte 962 ria";phylum;Alphaproteobacteria;class;Rhizo Parvibaculum genus 0.00 0.00 0.00 0.00 biales;orde Root;rootrank;Bacteria;domain;"Proteobacte 958 ria";phylum;Alphaproteobacteria;class;Rhizo Sinorhizobium genus 0.00 0.00 0.00 0.00 biales;orde
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Journal of Veterinary Science & Animal Husbandry 26
Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc Root;rootrank;Bacteria;domain;"Proteobacte 929 ria";phylum;Alphaproteobacteria;class;Rhizo Methylobacterium genus 0.00 0.00 0.00 0.00 biales;orde Root;rootrank;Bacteria;domain;"Proteobacte 1165 ria";phylum;Alphaproteobacteria;class;Sphin Sphingomonas genus 0.00 0.00 0.00 0.00 gomonada Root;rootrank;Bacteria;domain;"Proteobacte 1005 ria";phylum;Alphaproteobacteria;class;Rhod Mameliella genus 0.00 0.00 0.00 0.00 obacterale Root;rootrank;Bacteria;domain;"Proteobacte 1253 ria";phylum;Betaproteobacteria;class;Burkho Parasutterella genus 1.22 0.00 0.00 0.00 lderiales;o Root;rootrank;Bacteria;domain;"Proteobacte 1254 ria";phylum;Betaproteobacteria;class;Burkho Sutterella genus 0.32 1.70 0.00 0.00 lderiales;o Root;rootrank;Bacteria;domain;"Proteobacte 1249 ria";phylum;Betaproteobacteria;class;Burkho Oxalobacter genus 0.00 0.00 0.00 0.00 lderiales;o Root;rootrank;Bacteria;domain;"Proteobacte 1219 ria";phylum;Betaproteobacteria;class;Burkho Hydrogenophaga genus 0.00 0.00 0.00 0.00 lderiales;o Root;rootrank;Bacteria;domain;"Proteobacte 1209 ria";phylum;Betaproteobacteria;class;Burkho Alicycliphilus genus 0.00 0.00 0.00 0.00 lderiales;o Root;rootrank;Bacteria;domain;"Proteobacte 1178 ria";phylum;Betaproteobacteria;class;Burkho Achromobacter genus 0.00 0.00 0.00 0.00 lderiales;o Root;rootrank;Bacteria;domain;"Proteobacte 1186 ria";phylum;Betaproteobacteria;class;Burkho Kerstersia genus 0.00 0.00 0.00 0.00 lderiales;o Root;rootrank;Bacteria;domain;"Proteobacte 1308 ria";phylum;Betaproteobacteria;class;Neisser Neisseria genus 0.00 0.00 0.00 0.00 iales;orde Root;rootrank;Bacteria;domain;"Proteobacte 1291 ria";phylum;Betaproteobacteria;class;Neisser Bergeriella genus 0.00 0.00 0.00 0.00 iales;orde Root;rootrank;Bacteria;domain;"Proteobacte 1481 ria";phylum;Epsilonproteobacteria;class;Cam Campylobacter genus 0.04 0.01 0.03 0.01 pylobacte Root;rootrank;Bacteria;domain;"Proteobacte 1485 ria";phylum;Epsilonproteobacteria;class;Cam Helicobacter genus 0.00 0.00 0.02 0.00 pylobacte Root;rootrank;Bacteria;domain;"Proteobacte 1490 ria";phylum;Epsilonproteobacteria;class;Cam Wolinella genus 0.00 0.00 0.00 0.00 pylobacte Root;rootrank;Bacteria;domain;"Proteobacte 1492 ria";phylum;Epsilonproteobacteria;class;Cam Hydrogenimonas genus 0.00 0.00 0.00 0.00 pylobacte Root;rootrank;Bacteria;domain;"Proteobacte 1360 ria";phylum;Deltaproteobacteria;class;Bdello Vampirovibrio genus 0.00 0.00 0.00 0.00 vibrionale Root;rootrank;Bacteria;domain;"Proteobacte 1408 ria";phylum;Deltaproteobacteria;class;Desulf Bilophila genus 0.00 0.00 0.00 0.00 ovibrional Root;rootrank;Bacteria;domain;"Proteobacte 1411 ria";phylum;Deltaproteobacteria;class;Desulf Desulfovibrio genus 0.00 0.00 0.00 0.00 ovibrional Root;rootrank;Bacteria;domain;"Proteobacte 1402 ria";phylum;Deltaproteobacteria;class;Desulf Desulfovermiculus genus 0.00 0.00 0.00 0.00 ovibrional
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27 Journal of Veterinary Science & Animal Husbandry
Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc Root;rootrank;Bacteria;domain;"Fusobacteri 794 a";phylum;"Fusobacteria";class;"Fusobacteria Fusobacterium genus 0.04 0.00 0.02 0.00 les";order Root;rootrank;Bacteria;domain;"Fusobacteri 798 a";phylum;"Fusobacteria";class;"Fusobacteria Clostridium XIX genus 0.03 0.00 0.02 0.00 les";order Root;rootrank;Bacteria;domain;"Fusobacteri 793 a";phylum;"Fusobacteria";class;"Fusobacteria Cetobacterium genus 0.00 0.00 0.00 0.00 les";order Root;rootrank;Bacteria;domain;"Actinobacte 369 ria";phylum;Actinobacteria;class;Coriobacte Collinsella genus 0.09 0.01 0.05 0.04 ridae;subcl Root;rootrank;Bacteria;domain;"Actinobacte 376 ria";phylum;Actinobacteria;class;Coriobacte Olsenella genus 0.01 0.01 0.01 0.01 ridae;subcl Root;rootrank;Bacteria;domain;"Actinobacte 374 ria";phylum;Actinobacteria;class;Coriobacte Enterorhabdus genus 0.00 0.00 0.01 0.00 ridae;subcl Root;rootrank;Bacteria;domain;"Actinobacte 378 ria";phylum;Actinobacteria;class;Coriobacte Slackia genus 0.01 0.00 0.01 0.00 ridae;subcl Root;rootrank;Bacteria;domain;"Actinobacte 377 ria";phylum;Actinobacteria;class;Coriobacte Paraeggerthella genus 0.00 0.00 0.00 0.00 ridae;subcl Root;rootrank;Bacteria;domain;"Actinobacte 370 ria";phylum;Actinobacteria;class;Coriobacte Coriobacterium genus 0.00 0.00 0.00 0.00 ridae;subcl Root;rootrank;Bacteria;domain;"Actinobacte 375 ria";phylum;Actinobacteria;class;Coriobacte Gordonibacter genus 0.00 0.00 0.00 0.00 ridae;subcl Root;rootrank;Bacteria;domain;"Actinobacte 366 ria";phylum;Actinobacteria;class;Coriobacte Adlercreutzia genus 0.00 0.00 0.00 0.00 ridae;subcl Root;rootrank;Bacteria;domain;"Actinobacte 368 ria";phylum;Actinobacteria;class;Coriobacte Atopobium genus 0.00 0.00 0.00 0.00 ridae;subcl Root;rootrank;Bacteria;domain;"Actinobacte 373 ria";phylum;Actinobacteria;class;Coriobacte Eggerthella genus 0.00 0.00 0.00 0.00 ridae;subcl Root;rootrank;Bacteria;domain;"Actinobacte 367 ria";phylum;Actinobacteria;class;Coriobacte Asaccharobacter genus 0.00 0.00 0.00 0.00 ridae;subcl Root;rootrank;Bacteria;domain;"Actinobacte 357 ria";phylum;Actinobacteria;class;Actinobacte Bifidobacterium genus 0.01 0.00 0.02 0.00 ridae;subc Root;rootrank;Bacteria;domain;"Actinobacte 360 ria";phylum;Actinobacteria;class;Actinobacte Parascardovia genus 0.00 0.00 0.00 0.00 ridae;subc Root;rootrank;Bacteria;domain;"Actinobacte 359 ria";phylum;Actinobacteria;class;Actinobacte Metascardovia genus 0.00 0.00 0.00 0.00 ridae;subc Root;rootrank;Bacteria;domain;"Actinobacte 356 ria";phylum;Actinobacteria;class;Actinobacte Alloscardovia genus 0.00 0.00 0.00 0.00 ridae;subc Root;rootrank;Bacteria;domain;"Actinobacte 358 ria";phylum;Actinobacteria;class;Actinobacte Gardnerella genus 0.00 0.00 0.00 0.00 ridae;subc Root;rootrank;Bacteria;domain;"Actinobacte 278 ria";phylum;Actinobacteria;class;Actinobacte Propionimicrobium genus 0.00 0.00 0.00 0.00 ridae;subc
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Journal of Veterinary Science & Animal Husbandry 28
Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc Root;rootrank;Bacteria;domain;"Actinobacte 274 ria";phylum;Actinobacteria;class;Actinobacte Propionibacterium genus 0.00 0.00 0.00 0.00 ridae;subc Root;rootrank;Bacteria;domain;"Actinobacte 265 ria";phylum;Actinobacteria;class;Actinobacte Aestuariimicrobium genus 0.00 0.00 0.00 0.00 ridae;subc Root;rootrank;Bacteria;domain;"Actinobacte 179 ria";phylum;Actinobacteria;class;Actinobacte Okibacterium genus 0.00 0.00 0.00 0.00 ridae;subc Root;rootrank;Bacteria;domain;"Actinobacte 175 ria";phylum;Actinobacteria;class;Actinobacte Microbacterium genus 0.00 0.00 0.00 0.00 ridae;subc Root;rootrank;Bacteria;domain;"Actinobacte 193 ria";phylum;Actinobacteria;class;Actinobacte Auritidibacter genus 0.00 0.00 0.00 0.00 ridae;subc Root;rootrank;Bacteria;domain;"Actinobacte 199 ria";phylum;Actinobacteria;class;Actinobacte Rothia genus 0.00 0.00 0.00 0.00 ridae;subc Root;rootrank;Bacteria;domain;"Actinobacte 39 ria";phylum;Actinobacteria;class;Actinobacte Corynebacterium genus 0.00 0.00 0.00 0.00 ridae;subc Root;rootrank;Bacteria;domain;"Actinobacte 48 ria";phylum;Actinobacteria;class;Actinobacte Mycobacterium genus 0.00 0.00 0.00 0.00 ridae;subc Root;rootrank;Bacteria;domain;"Actinobacte 42 ria";phylum;Actinobacteria;class;Actinobacte Dietzia genus 0.00 0.00 0.00 0.00 ridae;subc Root;rootrank;Bacteria;domain;"Actinobacte 21 ria";phylum;Actinobacteria;class;Actinobacte Actinomyces genus 0.00 0.00 0.00 0.00 ridae;subc Root;rootrank;Bacteria;domain;"Actinobacte 302 ria";phylum;Actinobacteria;class;Actinobacte Pseudonocardia genus 0.00 0.00 0.00 0.00 ridae;subc Root;rootrank;Bacteria;domain;"Tenericutes 1929 ";phylum;Mollicutes;class;Anaeroplasmatales Asteroleplasma genus 0.01 0.02 0.05 0.01 ;order;Ana Root;rootrank;Bacteria;domain;"Tenericutes 1928 ";phylum;Mollicutes;class;Anaeroplasmatales Anaeroplasma genus 0.00 0.00 0.00 0.00 ;order;Ana Root;rootrank;Bacteria;domain;"Tenericutes 1938 ";phylum;Mollicutes;class;Haloplasmatales;or Haloplasma genus 0.00 0.00 0.00 0.00 der;Halopl Root;rootrank;Bacteria;domain;"Spirochaete 1903 s";phylum;Spirochaetes;class;Spirochaetales; Treponema genus 0.00 0.00 0.00 0.00 order;Spir Root;rootrank;Bacteria;domain;"Spirochaete 1902 s";phylum;Spirochaetes;class;Spirochaetales; Spirochaeta genus 0.00 0.00 0.00 0.00 order;Spir Root;rootrank;Bacteria;domain;"Synergistete 1914 s";phylum;Synergistia;class;Synergistales;ord Cloacibacillus genus 0.00 0.00 0.00 0.00 er;Synergi Root;rootrank;Bacteria;domain;"Synergistete 1917 s";phylum;Synergistia;class;Synergistales;ord Pyramidobacter genus 0.00 0.00 0.00 0.00 er;Synergi Root;rootrank;Bacteria;domain;"Deferribact 755 eres";phylum;Deferribacteres;class;Deferriba Mucispirillum genus 0.00 0.00 0.00 0.00 cterales;or Root;rootrank;Bacteria;domain;"Verrucomi Subdivision5_genera_ 2182 crobia";phylum;Subdivision5;class;Subdivisi genus 0.00 0.00 0.00 0.00 incertae_sedi on5_genera_
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Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc Root;rootrank;Bacteria;domain;"Fibrobacter 788 es";phylum;"Fibrobacteria";class;"Fibrobacter Fibrobacter genus 0.00 0.00 0.00 0.00 ales";orde Root;rootrank;Bacteria;domain;Cyanobacter 2721 ia/Chloroplast;phylum;Chloroplast;class;Chl Streptophyta genus 0.00 0.00 0.00 0.00 oroplast;fam Root;rootrank;Bacteria;domain;"Aci 2241 dobacteria";phylum;Acidobacteria_ Gp21 genus 0.00 0.00 0.00 0.00 Gp21;class;Gp21;genus; Root;rootrank;Bacteria;domain;"Aci 2213 dobacteria";phylum;Acidobacteria_ Gp5 genus 0.00 0.00 0.00 0.00 Gp5;class;Gp5;genus; Root;rootrank;Bacteria;domain;"Chlamydiae 671 ";phylum;Chlamydiae;class;Chlamydiales;ord Chlamydia genus 0.00 0.00 0.00 0.00 er;Chlamyd Root;rootrank;Bacteria;domain;"Elusimicrob 783 ia";phylum;Elusimicrobia;class;Elusimicrobia Elusimicrobium genus 0.00 0.00 0.00 0.00 les;order;El Root;rootrank;Bacteria;domain;"Planctomyc 830 etes";phylum;"Planctomycetacia";class;Planct Isosphaera genus 0.00 0.00 0.00 0.00 omycetale Root;rootrank;Bacteria;domain;TM7;phylum; TM7_genera_incer- 2147 genus 0.00 0.00 0.00 0.01 TM7_genera_incertae_sedis;genus; tae_sedis Root;rootrank;Bacteria;domain;"Lentisphaer 816 ae";phylum;"Lentisphaeria";class;Victivallale Victivallis genus 0.00 0.00 0.00 0.00 s;order;"Vi Root;rootrank;Archaea;domain;"Crenarchae 1988 ota";phylum;Thermoprotei;class;Desulfuroco Pyrolobus genus 0.00 0.00 0.00 0.00 ccales;orde Root;rootrank;Archaea;domain;"Euryarchae 2059 ota";phylum;Methanobacteria;class;Methano Methanobrevibacter genus 0.00 0.00 0.00 0.00 bacteriales
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