Journal of Veterinary Science & Animal Husbandry Volume 5 | Issue 3 ISSN: 2348-9790 Research Article Open Access Supplemental Table 1 Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc 0 null Root no rank 100.00 100.00 100.00 100.00 unclassi- -1 Root;rootrank;unclassified_Root;; unclassified_Root 0.05 0.03 0.08 0.08 fied_Root 1 Root;rootrank;Bacteria;domain; Bacteria domain 99.95 99.97 99.91 99.91 1966 Root;rootrank;Archaea;domain; Archaea domain 0.00 0.00 0.00 0.01 Root;rootrank;Archaea;domain;unclassifi unclassified_ -1967 unclassified_Archaea 0.00 0.00 0.00 0.00 ed_Archaea;; Archaea Root;rootrank;Bacteria;domain;unclassifi unclassified_ -2 unclassified_Bacteria 3.15 2.33 5.19 5.34 ed_Bacteria;; Bacteria Root;rootrank;Bacteria;domain;"Bacteroidet 422 Bacteroidetes phylum 40.45 51.86 51.02 45.56 es";phylum; Root;rootrank;Bacteria;domain;Firmicutes; 2259 Firmicutes phylum 40.88 42.95 40.60 48.04 phylum; Root;rootrank;Bacteria;domain;"Proteobacte 841 Proteobacteria phylum 15.18 2.77 2.83 0.86 ria";phylum; Root;rootrank;Bacteria;domain;"Fusobacteri 789 Fusobacteria phylum 0.08 0.00 0.04 0.00 a";phylum; Root;rootrank;Bacteria;domain;"Actinobacte 2 Actinobacteria phylum 0.19 0.04 0.16 0.10 ria";phylum; Root;rootrank;Bacteria;domain;"Tenericutes 1921 Tenericutes phylum 0.01 0.02 0.05 0.01 ";phylum; Root;rootrank;Bacteria;domain;"Spirochaete 1883 Spirochaetes phylum 0.00 0.00 0.00 0.00 s";phylum; Root;rootrank;Bacteria;domain;"Synergistete 1906 Synergistetes phylum 0.01 0.00 0.00 0.00 s";phylum; Root;rootrank;Bacteria;domain;"Deferribacte 746 Deferribacteres phylum 0.00 0.00 0.00 0.00 res";phylum; Root;rootrank;Bacteria;domain;"Verrucomicr 2164 Verrucomicrobia phylum 0.00 0.00 0.00 0.00 obia";phylum; Root;rootrank;Bacteria;domain;"Fibrobacter 784 Fibrobacteres phylum 0.00 0.00 0.00 0.00 es";phylum; Root;rootrank;Bacteria;domain;Cyanobacter Cyanobacteria/Chlo- 2684 phylum 0.00 0.00 0.00 0.00 ia/Chloroplast;phylum; roplast Root;rootrank;Bacteria;domain;"Acidobacter 2195 Acidobacteria phylum 0.00 0.00 0.00 0.00 ia";phylum; Root;rootrank;Bacteria;domain;"Chlamydiae 667 Chlamydiae phylum 0.00 0.00 0.00 0.00 ";phylum; Root;rootrank;Bacteria;domain;"Elusimicrob 779 Elusimicrobia phylum 0.00 0.00 0.00 0.00 ia";phylum; Root;rootrank;Bacteria;domain;"Planctomyce 824 Planctomycetes phylum 0.00 0.00 0.00 0.00 tes";phylum; 2146 Root;rootrank;Bacteria;domain;TM7;phylum; TM7 phylum 0.00 0.00 0.00 0.01 Root;rootrank;Bacteria;domain;"Lentisphaer 809 Lentisphaerae phylum 0.00 0.00 0.00 0.00 ae";phylum; Root;rootrank;Archaea;domain;"Crenarchae 1967 Crenarchaeota phylum 0.00 0.00 0.00 0.01 ota";phylum; Root;rootrank;Archaea;domain;"Euryarchaeo 2010 Euryarchaeota phylum 0.00 0.00 0.00 0.00 ta";phylum; Root;rootrank;Bacteria;domain;"Bacteroidetes unclassified_ "Bacteroi- phylum- -423 3.05 2.96 3.29 2.91 ";phylum;unclassified_"Bacteroidetes";; detes" unclassified Annex Publishers | www.annexpublishers.com Volume 5 | Issue 3 Journal of Veterinary Science & Animal Husbandry 2 Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc Root;rootrank;Bacteria;domain;Firmicutes;ph phylum- -2260 unclassified_Firmicutes 1.34 1.39 1.83 2.92 ylum;unclassified_Firmicutes;; unclassified Root;rootrank;Bacteria;domain;"Proteobacteri unclassified_ "Proteo- phylum- -842 0.27 0.04 0.12 0.07 a";phylum;unclassified_"Proteobacteria";; bacteria" unclassified Root;rootrank;Bacteria;domain;"Acidobacteri unclassified_ "Acido- phylum- -2196 0.00 0.00 0.00 0.00 a";phylum;unclassified_"Acidobacteria";; bacteria" unclassified Root;rootrank;Bacteria;domain;"Verrucomi unclassified_ "Verru- phylum- -2165 crobia";phylum;unclassified_"Verrucomicro 0.00 0.00 0.00 0.00 comicrobia" unclassified bia";; Root;rootrank;Bacteria;domain;Cyanobacte unclassified_Cyanobac- phylum- -2685 ria/Chloroplast;phylum;unclassified_Cyano- 0.00 0.00 0.00 0.00 teria/Chlorop unclassified bacteria/Chlo Root;rootrank;Bacteria;domain;"Bacteroidetes 423 Bacteroidia class 37.34 48.86 47.66 42.54 ";phylum;"Bacteroidia";class; Root;rootrank;Bacteria;domain;"Bacteroidetes 565 Sphingobacteria class 0.05 0.05 0.07 0.09 ";phylum;"Sphingobacteria";class; Root;rootrank;Bacteria;domain;"Bacteroidetes 458 Flavobacteria class 0.00 0.00 0.01 0.01 ";phylum;Flavobacteria;class; Root;rootrank;Bacteria;domain;"Bacteroidetes Bacteroidetes_incer- 657 class 0.00 0.00 0.00 0.00 ";phylum;"Bacteroidetes"_incertae_sedis;class; tae_sedis Root;rootrank;Bacteria;domain;Firmicutes;ph 2722 Negativicutes class 15.03 10.45 1.56 1.41 ylum;Negativicutes;class; Root;rootrank;Bacteria;domain;Firmicutes;ph 2558 Erysipelotrichia class 3.15 3.54 0.81 1.47 ylum;Erysipelotrichia;class; Root;rootrank;Bacteria;domain;Firmicutes;ph 2375 Clostridia class 20.28 24.55 25.70 28.30 ylum;Clostridia;class; Root;rootrank;Bacteria;domain;Firmicutes;ph 2260 Bacilli class 1.07 3.03 10.72 13.95 ylum;Bacilli;class; Root;rootrank;Bacteria;domain;"Proteobacteri 1501 Gammaproteobacteria class 12.27 0.07 1.42 0.09 a";phylum;Gammaproteobacteria;class; Root;rootrank;Bacteria;domain;"Proteobacteri 842 Alphaproteobacteria class 0.81 0.84 1.04 0.64 a";phylum;Alphaproteobacteria;class; Root;rootrank;Bacteria;domain;"Proteobacteri 1175 Betaproteobacteria class 1.77 1.82 0.19 0.04 a";phylum;Betaproteobacteria;class; Root;rootrank;Bacteria;domain;"Proteobacteri 1477 Epsilonproteobacteria class 0.05 0.01 0.06 0.01 a";phylum;Epsilonproteobacteria;class; Root;rootrank;Bacteria;domain;"Proteobacteri 1352 Deltaproteobacteria class 0.00 0.00 0.00 0.01 a";phylum;Deltaproteobacteria;class; Root;rootrank;Bacteria;domain;"Fusobacteria 790 Fusobacteria class 0.08 0.00 0.04 0.00 ";phylum;"Fusobacteria";class; Root;rootrank;Bacteria;domain;"Actinobacter 3 Actinobacteria class 0.19 0.04 0.16 0.10 ia";phylum;Actinobacteria;class; Root;rootrank;Bacteria;domain;"Tenericutes"; 1922 Mollicutes class 0.01 0.02 0.05 0.01 phylum;Mollicutes;class; Root;rootrank;Bacteria;domain;"Spirochaetes" 1884 Spirochaetes class 0.00 0.00 0.00 0.00 ;phylum;Spirochaetes;class; Root;rootrank;Bacteria;domain;"Synergistetes 1907 Synergistia class 0.01 0.00 0.00 0.00 ";phylum;Synergistia;class; Root;rootrank;Bacteria;domain;"Deferribacter 747 Deferribacteres class 0.00 0.00 0.00 0.00 es";phylum;Deferribacteres;class; Root;rootrank;Bacteria;domain;"Verrucomicr 2181 Subdivision5 class 0.00 0.00 0.00 0.00 obia";phylum;Subdivision5;class; Root;rootrank;Bacteria;domain;"Fibrobacteres 785 Fibrobacteria class 0.00 0.00 0.00 0.00 ";phylum;"Fibrobacteria";class; Root;rootrank;Bacteria;domain;Cyanobacter 2685 Cyanobacteria class 0.00 0.00 0.00 0.00 ia/Chloroplast;phylum;Cyanobacteria;class; Root;rootrank;Bacteria;domain;Cyanobacter 2713 Chloroplast class 0.00 0.00 0.00 0.00 ia/Chloroplast;phylum;Chloroplast;class; Annex Publishers | www.annexpublishers.com Volume 5 | Issue 3 3 Journal of Veterinary Science & Animal Husbandry Cultured Cultured Conven- Organic_ Taxid Lineage Name Rank Conven- Organic_ tional_ Perc tio P Perc Root;rootrank;Bacteria;domain;"Acidobacteri 2240 Acidobacteria_Gp21 class 0.00 0.00 0.00 0.00 a";phylum;Acidobacteria_Gp21;class; Root;rootrank;Bacteria;domain;"Acidobacteri 2212 Acidobacteria_Gp5 class 0.00 0.00 0.00 0.00 a";phylum;Acidobacteria_Gp5;class; Root;rootrank;Bacteria;domain;"Chlamydiae"; 668 Chlamydiae class 0.00 0.00 0.00 0.00 phylum;Chlamydiae;class; Root;rootrank;Bacteria;domain;"Elusimicrobi 780 Elusimicrobia class 0.00 0.00 0.00 0.00 a";phylum;Elusimicrobia;class; Root;rootrank;Bacteria;domain;"Planctomycet 825 Planctomycetacia class 0.00 0.00 0.00 0.00 es";phylum;"Planctomycetacia";class; Root;rootrank;Bacteria;domain;"Lentisphaera 810 Lentisphaeria class 0.00 0.00 0.00 0.00 e";phylum;"Lentisphaeria";class; Root;rootrank;Archaea;domain;"Crenarchaeo 1968 Thermoprotei class 0.00 0.00 0.00 0.01 ta";phylum;Thermoprotei;class; Root;rootrank;Archaea;domain;"Euryarchaeot 2055 Methanobacteria class 0.00 0.00 0.00 0.00 a";phylum;Methanobacteria;class; Root;rootrank;Bacteria;domain;Firmicutes;ph class-unclas- -2261 unclassified_Bacilli 0.03 0.13 0.22 0.30 ylum;Bacilli;class;unclassified_Bacilli;; sified Root;rootrank;Bacteria;domain;Firmicutes;ph class-unclas- -2376 unclassified_Clostridia 0.03 0.03 0.07 0.15 ylum;Clostridia;class;unclassified_Clostridia;; sified Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Betapro- class-unclas- -1176 ria";phylum;Betaproteobacteria;class;unclass 0.05 0.04 0.18 0.04 teobacteria sified ified_Beta Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Gam- class-unclas- -1502 ria";phylum;Gammaproteobacteria;class;unc 0.35 0.01 0.08 0.02 maproteobacteria sified lassified_G Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Epsilon- class-unclas- -1478 ria";phylum;Epsilonproteobacteria;class;uncl 0.00 0.00 0.00 0.00 proteobacteria sified assified_E Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Deltapro- class-unclas- -1353 ria";phylum;Deltaproteobacteria;class;unclas 0.00 0.00 0.00 0.00 teobacteria sified sified_Del Root;rootrank;Bacteria;domain;"Proteobacte unclassified_Alphapro- class-unclas- -843 ria";phylum;Alphaproteobacteria;class;uncla 0.00 0.00 0.00 0.00 teobacteria sified ssified_Alp Root;rootrank;Bacteria;domain;"Actinobacte unclassified_Actinobac- class-unclas- -17 ria";phylum;Actinobacteria;class;Actinobacte 0.00 0.00 0.00 0.00 teridae sified ridae;subc Root;rootrank;Bacteria;domain;"Actinobact unclassified_Actino- class-unclas- -4 eria";phylum;Actinobacteria;class;unclassifi 0.00 0.00 0.00 0.00 bacteria sified ed_Actinobac Root;rootrank;Bacteria;domain;"Tenericutes