Bloom Dynamics of the Red Tide Dinoflagellate Alexandrium Fundyense in the Gulf of Maine: a Synthesis and Progress Towards a Forecasting Capability
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Assessing Allelopathic Effects of Alexandrium Fundyense on Thalassiosira SP
The University of Maine DigitalCommons@UMaine Electronic Theses and Dissertations Fogler Library 12-2012 Assessing Allelopathic Effects of Alexandrium Fundyense on Thalassiosira SP. Emily R. Lyczkowski Follow this and additional works at: http://digitalcommons.library.umaine.edu/etd Part of the Oceanography Commons Recommended Citation Lyczkowski, Emily R., "Assessing Allelopathic Effects of Alexandrium Fundyense on Thalassiosira SP." (2012). Electronic Theses and Dissertations. 1861. http://digitalcommons.library.umaine.edu/etd/1861 This Open-Access Thesis is brought to you for free and open access by DigitalCommons@UMaine. It has been accepted for inclusion in Electronic Theses and Dissertations by an authorized administrator of DigitalCommons@UMaine. ASSESSING ALLELOPATHIC EFFECTS OF ALEXANDRIUM FUNDYENSE ON THALASSIOSIRA SP. By Emily R. Lyczkowski B.A. Colby College, 2008 A THESIS Submitted in Partial Fulfillment of the Requirements for the Degree of Master of Science (in Oceanography) The Graduate School The University of Maine December, 2012 Advisory Committee: Lee Karp-Boss, Associate Research Professor of Marine Sciences, Advisor Mary-Jane Perry, Professor of Marine Sciences David Townsend, Professor of Oceanography Mark Wells, Professor of Marine Sciences i ASSESSMENT OF ALLELOPATHIC EFFECTS OF ALEXANDRIUM FUNDYENSE ON THALASSIOSIRA SP. By Emily R. Lyczkowski Thesis Advisor: Dr. Lee Karp-Boss An Abstract of the Thesis Presented in Partial Fulfillment of the Requirements for the Degree of Master of Science (in Oceanography) December, 2012 Production of allelopathic chemicals by the toxic dinoflagellate Alexandrium fundyense is one suggested mechanism by which this relatively slow grower outcompetes other phytoplankton, particularly diatoms. Despite well documented allelopathic potential of Alexandrium spp., the potency is variable. -
Alexandrium Fundyense and A. Catenella) Have Minimal Apparent Evects on Oyster Hemocytes
Mar Biol (2007) 152:441–447 DOI 10.1007/s00227-007-0703-3 RESEARCH ARTICLE Toxic dinoXagellates (Alexandrium fundyense and A. catenella) have minimal apparent eVects on oyster hemocytes Hélène Hégaret · Gary H. Wikfors · Philippe Soudant · Christophe Lambert · Sandra E. Shumway · Jean Baptiste Bérard · Patrick Lassus Received: 1 August 2005 / Accepted: 9 April 2007 / Published online: 8 May 2007 © Springer-Verlag 2007 Abstract The possible eVect of Alexandrium spp. con- in C. virginica and measured toxin accumulation in C. taining paralytic shellWsh poisoning (PSP) toxins on the gigas. The only signiWcant correlation found was between hemocytes of oysters was tested experimentally. In one toxin accumulation at one temperature and higher numbers trial, eastern oysters, Crassostrea virginica Gmelin, were of circulating live and dead hemocytes in C. gigas. The PSP exposed to bloom concentrations of the sympatric dinoXa- toxins are known to interfere speciWcally with sodium- gellate, Alexandrium fundyense Balech, alone and in a channel function; therefore, the Wnding that the toxins had mixture with a non-toxic diatom, Thalassiosira weissXogii no eVect on measured hemocyte functions suggests that (Grun) Fryxell et Hasle. Subsequently, another experiment sodium-channel physiology is not important in these hemo- exposed PaciWc oysters, Crassostrea gigas Thunberg, to a cyte functions. Finally, because oysters were exposed to the mixed suspension of the sympatric, toxic species Alexand- living algae, not puriWed toxins, there was no evidence of rium catenella (Whedon et Kofoid) Balech, with T. bioactive compounds other than PSP toxins aVecting hemo- weissXogii. Measurements of numbers of oyster hemocytes, cytes in the two species of Alexandrium studied. -
Global Transcriptional Profiling of the Toxic Dinoflagellate Alexandrium
BMC Genomics BioMed Central Research article Open Access Global transcriptional profiling of the toxic dinoflagellate Alexandrium fundyense using Massively Parallel Signature Sequencing Deana L Erdner*1 and Donald M Anderson2 Address: 1Marine Science Institute, University of Texas at Austin, Port Aransas, Texas 78373, USA and 2Biology Department, Woods Hole Oceanographic Institution, Woods Hole MA 02543, USA Email: Deana L Erdner* - [email protected]; Donald M Anderson - [email protected] * Corresponding author Published: 25 April 2006 Received: 13 December 2005 Accepted: 25 April 2006 BMC Genomics 2006, 7:88 doi:10.1186/1471-2164-7-88 This article is available from: http://www.biomedcentral.com/1471-2164/7/88 © 2006 Erdner and Anderson; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: Dinoflagellates are one of the most important classes of marine and freshwater algae, notable both for their functional diversity and ecological significance. They occur naturally as free-living cells, as endosymbionts of marine invertebrates and are well known for their involvement in "red tides". Dinoflagellates are also notable for their unusual genome content and structure, which suggests that the organization and regulation of dinoflagellate genes may be very different from that of most eukaryotes. To investigate the content and regulation of the dinoflagellate genome, we performed a global analysis of the transcriptome of the toxic dinoflagellate Alexandrium fundyense under nitrate- and phosphate-limited conditions using Massively Parallel Signature Sequencing (MPSS). -
1 Alexandrium Fundyense Cyst Viability and Germling Survival in Light Vs
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Woods Hole Open Access Server 1 Alexandrium fundyense cyst viability and germling survival in light vs. dark at a constant low 2 temperature 3 Emil Vahtera1*, Bibiana G. Crespo1, Dennis J. McGillicuddy Jr.1, Kalle Olli2 and Donald M. Anderson1 4 1Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA 5 2Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, 51005 Tartu Estonia 6 7 Abstract 8 Both observations and models suggest that large-scale coastal blooms of Alexandrium fundyense in the 9 Gulf of Maine are seeded by deep-bottom cyst accumulation zones (“seed beds”) where cysts 10 germinate from the sediment surface or the overlying near-bottom nepheloid layers at water depths 11 exceeding 100 m. The germling cells and their vegetative progeny are assumed to be subject to modest 12 mortality while in complete darkness as they swim to illuminated surface waters. To test the validity of 13 this assumption we investigated in the laboratory cyst viability and the survival of the germling cells 14 and their vegetative progeny during prolonged exposure to darkness at a temperature of 6 °C, 15 simulating the conditions in deep Gulf of Maine waters. We isolated cysts from bottom sediments 16 collected in the Gulf of Maine under low red light and incubated them in 96-well tissue culture-plates 17 in culture medium under a 10:14h light: dark cycle and under complete darkness. Cyst viability was 18 high, with excystment frequency reaching 90% in the illuminated treatment after 30 days and in the 19 dark treatment after 50 days. -
The Windblown: Possible Explanations for Dinophyte DNA
bioRxiv preprint doi: https://doi.org/10.1101/2020.08.07.242388; this version posted August 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. The windblown: possible explanations for dinophyte DNA in forest soils Marc Gottschlinga, Lucas Czechb,c, Frédéric Mahéd,e, Sina Adlf, Micah Dunthorng,h,* a Department Biologie, Systematische Botanik und Mykologie, GeoBio-Center, Ludwig- Maximilians-Universität München, D-80638 Munich, Germany b Computational Molecular Evolution Group, Heidelberg Institute for Theoretical Studies, D- 69118 Heidelberg, Germany c Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA d CIRAD, UMR BGPI, F-34398, Montpellier, France e BGPI, Université de Montpellier, CIRAD, IRD, Montpellier SupAgro, Montpellier, France f Department of Soil Sciences, College of Agriculture and Bioresources, University of Saskatchewan, Saskatoon, S7N 5A8, SK, Canada g Eukaryotic Microbiology, Faculty of Biology, Universität Duisburg-Essen, D-45141 Essen, Germany h Centre for Water and Environmental Research (ZWU), Universität Duisburg-Essen, D- 45141 Essen, Germany Running title: Dinophytes in soils Correspondence M. Dunthorn, Eukaryotic Microbiology, Faculty of Biology, Universität Duisburg-Essen, Universitätsstrasse 5, D-45141 Essen, Germany Telephone number: +49-(0)-201-183-2453; email: [email protected] bioRxiv preprint doi: https://doi.org/10.1101/2020.08.07.242388; this version posted August 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Alexandrium Monilatum in the Lower Chesapeake Bay: Sediment Cyst Distribution and Potential Health Impacts on Crassostrea Virginica
W&M ScholarWorks Dissertations, Theses, and Masters Projects Theses, Dissertations, & Master Projects 2016 Alexandrium Monilatum in the Lower Chesapeake Bay: Sediment Cyst Distribution and Potential Health Impacts on Crassostrea Virginica Sarah Pease College of William and Mary - Virginia Institute of Marine Science, [email protected] Follow this and additional works at: https://scholarworks.wm.edu/etd Part of the Aquaculture and Fisheries Commons, Ecology and Evolutionary Biology Commons, and the Marine Biology Commons Recommended Citation Pease, Sarah, "Alexandrium Monilatum in the Lower Chesapeake Bay: Sediment Cyst Distribution and Potential Health Impacts on Crassostrea Virginica" (2016). Dissertations, Theses, and Masters Projects. Paper 1477068141. http://doi.org/10.21220/V5C30T This Thesis is brought to you for free and open access by the Theses, Dissertations, & Master Projects at W&M ScholarWorks. It has been accepted for inclusion in Dissertations, Theses, and Masters Projects by an authorized administrator of W&M ScholarWorks. For more information, please contact [email protected]. Alexandrium monilatum in the Lower Chesapeake Bay: Sediment Cyst Distribution and Potential Health Impacts on Crassostrea virginica ______________ A Thesis Presented to The Faculty of the School of Marine Science The College of William and Mary in Virginia In Partial Fulfillment of the Requirements for the Degree of Master of Science ______________ by Sarah K. D. Pease 2016 APPROVAL SHEET This thesis is submitted in partial fulfillment of the requirements for the degree of Master of Science _________________________________ Sarah K. D. Pease Approved, by the Committee, August 2016 __________________________________ Kimberly S. Reece, Ph.D. Committee Co-Chairman/Co-Advisor __________________________________ Wolfgang K. Vogelbein, Ph.D. -
Identification and Enumeration of Alexandrium Spp. from the Gulf Of
ARTICLE IN PRESS Deep-Sea Research II 52 (2005) 2467–2490 www.elsevier.com/locate/dsr2 Identification and enumeration of Alexandrium spp. from the Gulf of Maine using molecular probes Donald M. Andersona,Ã, David M. Kulisa, Bruce A. Keafera, Kristin E. Gribblea, Roman Marinb, Christopher A. Scholinb aBiology Department, MS #32, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA bMonterey Bay Aquarium Research Institute, 7700 Sandholdt Road, Moss Landing, CA 95039, USA Accepted 18 June 2005 Abstract Three different molecular methods were used with traditional brightfield microscope techniques to enumerate the toxic dinoflagellate Alexandrium fundyense in samples collected in the Gulf of Maine in 1998, 2000, 2001, and 2003. Two molecular probes were used in fluorescent whole-cell (WC) microscopic assays: a large-subunit ribosomal RNA (LSU rRNA) oligonucleotide probe (NA1) and a monoclonal antibody probe thought to be specific for Alexandrium spp. within the tamarense/catenella/fundyense complex. Cell abundance estimates also were obtained using the NA1 oligonucleotide probe in a semi-quantitative sandwich hybridization assay (SHA) that quantified target rRNA in cell lysates. Here we compare and contrast the specificity and utility of these probe types and assay approaches. WC counts of the 1998 field samples demonstrated that A. fundyense cell densities estimated using the antibody approach were higher than those using either the NA1 oligonucleotide or brightfield microscopy due to the co-occurrence of A. ostenfeldii with A. fundyense, and the inability of the antibody to discriminate between these two species. An approach using cell size and the presence or absence of food vacuoles allowed more accurate immunofluorescent cell counts of both species, but small cells of A. -
Alexandrium Tamarense Species Complex”
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/328938370 A practical guide to new nomenclature for species within the “Alexandrium tamarense species complex” Article · October 2018 CITATIONS READS 0 186 10 authors, including: Richard Wayne Litaker Marina Montresor National Oceanic and Atmospheric Administration Stazione Zoologica Anton Dohrn 159 PUBLICATIONS 4,155 CITATIONS 220 PUBLICATIONS 5,451 CITATIONS SEE PROFILE SEE PROFILE Michael Brosnahan Shauna Murray Woods Hole Oceanographic Institution University of Technology Sydney 21 PUBLICATIONS 408 CITATIONS 233 PUBLICATIONS 2,924 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: LIFEHAB View project Ecological and evolutionary significance of seed banks for the expansion of harmful algae blooms in the Baltic Sea View project All content following this page was uploaded by Richard Wayne Litaker on 14 November 2018. The user has requested enhancement of the downloaded file. A practical guide to new nomenclature designation of the Group I ribotype as A. fundyense. for species within the “Alexandrium The controversy regarding the tamarense species complex” Group I designation centers on whether the cells used for the original A. catenel- la description were from Group I or IV, For several decades, the “Alexandrium ITS2 complementary base pair changes, given that populations of both species tamarense species complex” included saxitoxin production and the presence in the Pacific are known to exhibit the three morphologically defined spe- or absence of a key gene involved in classic “A. catenella” morphotype. Mo- cies, A. catenella, A. fundyense, and A. -
Horizontal Gene Transfer Is a Significant Driver of Gene Innovation in Dinoflagellates
GBE Horizontal Gene Transfer is a Significant Driver of Gene Innovation in Dinoflagellates Jennifer H. Wisecaver1,3,*, Michael L. Brosnahan2, and Jeremiah D. Hackett1 1Department of Ecology and Evolutionary Biology, University of Arizona 2Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA 3Present address: Department of Biological Sciences, Vanderbilt University, Nashville, TN *Corresponding author: E-mail: [email protected]. Accepted: November 12, 2013 Data deposition:TheAlexandrium tamarense Group IV transcriptome assembly described in this article has been deposited at DDBJ/EMBL/ GenBank under the accession GAIQ01000000. Abstract The dinoflagellates are an evolutionarily and ecologically important group of microbial eukaryotes. Previous work suggests that horizontal gene transfer (HGT) is an important source of gene innovation in these organisms. However, dinoflagellate genomes are notoriously large and complex, making genomic investigation of this phenomenon impractical with currently available sequencing technology. Fortunately, de novo transcriptome sequencing and assembly provides an alternative approach for investigating HGT. We sequenced the transcriptome of the dinoflagellate Alexandrium tamarense Group IV to investigate how HGT has contributed to gene innovation in this group. Our comprehensive A. tamarense Group IV gene set was compared with those of 16 other eukaryotic genomes. Ancestral gene content reconstruction of ortholog groups shows that A. tamarense Group IV has the largest number of gene families gained (314–1,563 depending on inference method) relative to all other organisms in the analysis (0–782). Phylogenomic analysis indicates that genes horizontally acquired from bacteria are a significant proportion of this gene influx, as are genes transferred from other eukaryotes either through HGT or endosymbiosis. The dinoflagellates also display curious cases of gene loss associated with mitochondrial metabolism including the entire Complex I of oxidative phosphorylation. -
Environmental Factors Influencing the Distribution and Abundance Of
Harmful Algae 77 (2018) 81–92 Contents lists available at ScienceDirect Harmful Algae journal homepage: www.elsevier.com/locate/hal Environmental factors influencing the distribution and abundance of T Alexandrium catenella in Kachemak bay and lower cook inlet, Alaska ⁎ Mark W. Vanderseaa, , Steven R. Kiblera, Patricia A. Testerb, Kristine Holderiedc, Dominic E. Hondoleroc, Kim Powellc, Steve Bairdd, Angela Doroffe, Darcy Duganf, R. Wayne Litakera a National Oceanographic and Atmospheric Administration, National Ocean Service, Centers for Coastal Ocean Science, Stressor Detection and Impacts Division, Beaufort Laboratory, Beaufort, NC 28516, USA b Ocean Tester, LLC, 381 Gillikin Road, Beaufort, NC 28516, USA c National Oceanographic and Atmospheric Administration, National Ocean Service, Centers for Coastal Ocean Science, Kasitsna Bay Laboratory, Homer, AK, USA d Kachemak Bay National Estuarine Research Reserve, Homer, AK, USA e South Slough National Estuarine Research Reserve, Charleston, OR, USA f Alaska Ocean Observing System, Anchorage, AK, USA ARTICLE INFO ABSTRACT Keywords: Despite the long history of paralytic shellfish poisoning (PSP) events in Alaska, little is known about the seasonal Bloom distribution and abundance of the causative organism, Alexandrium, or the environmental factors that govern Nutrients toxic bloom development. To address this issue, a five year study (2012–2017) was undertaken in Kachemak Bay fi Paralytic shell sh poisoning and lower Cook Inlet Alaska to determine how the occurrence of Alexandrium catenella, the dominant PSP- Salinity causing Alexandrium species, was influenced by temperature, salinity, nutrient concentrations, and other en- Saxitoxin vironmental factors. Cell concentrations from 572 surface water samples were estimated using quantitative PCR. Temperature Dinoflagellate Monthly sampling revealed a seasonal pattern of A. -
Phytoplankton Responses to Marine Climate Change – an Introduction
Phytoplankton Responses to Marine Climate Change – An Introduction Laura Käse and Jana K. Geuer Abstract Introduction Phytoplankton are one of the key players in the ocean and contribute approximately 50% to global primary produc- Phytoplankton are some of the smallest marine organisms. tion. They serve as the basis for marine food webs, drive Still, they are one of the most important players in the marine chemical composition of the global atmosphere and environment. They are the basis of many marine food webs thereby climate. Seasonal environmental changes and and, at the same time, sequester as much carbon dioxide as nutrient availability naturally influence phytoplankton all terrestrial plants together. As such, they are important species composition. Since the industrial era, anthropo- players when it comes to ocean climate change. genic climatic influences have increased noticeably – also In this chapter, the nature of phytoplankton will be inves- within the ocean. Our changing climate, however, affects tigated. Their different taxa will be explored and their eco- the composition of phytoplankton species composition on logical roles in food webs, carbon cycles, and nutrient uptake a long-term basis and requires the organisms to adapt to will be examined. A short introduction on the range of meth- this changing environment, influencing micronutrient odology available for phytoplankton studies is presented. bioavailability and other biogeochemical parameters. At Furthermore, the concept of ocean-related climate change is the same time, phytoplankton themselves can influence introduced. Examples of seasonal plankton variability are the climate with their responses to environmental changes. given, followed by an introduction to time series, an impor- Due to its key role, phytoplankton has been of interest in tant tool to obtain long-term data. -
Alexandrium Catenella Cyst Dynamics in a Coastal Embayment: Temperature Dependence of Dormancy, Germination, and Bloom Initiation
ALEXANDRIUM CATENELLA CYST DYNAMICS IN A COASTAL EMBAYMENT: TEMPERATURE DEPENDENCE OF DORMANCY, GERMINATION, AND BLOOM INITIATION By Alexis Dal Fischer B.A., Wellesley College, 2010 Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy at the MASSACHUSETTS INSTITUTE OF TECHNOLOGY and the WOODS HOLE OCEANOGRAPHIC INSTITUTION June 2017 © 2017 Alexis Dal Fischer All rights reserved. The author hereby grants to MIT and WHOI permission to reproduce and to distribute publicly paper and electronic copies of this thesis document in whole or in part in any medium now known or hereafter created. Signature of Author ______________________________________________________________________________ Joint Program in Oceanography / Applied Ocean Science and Engineering Massachusetts Institute of Technology and Woods Hole Oceanographic Institution May 26, 2017 Certified by ______________________________________________________________________________ Dr. Donald M. Anderson Thesis Supervisor Accepted by ______________________________________________________________________________ Dr. Ann M. Tarrant Chair, Joint Committee for Biological Oceanography Woods Hole Oceanographic Institution 2 Contents Acknowledgements 5 Abstract 7 CHAPTER 1 Introduction 9 CHAPTER 2 Cold exposure controls the duration of dormancy in cysts of the 23 toxic dinoflagellate, Alexandrium catenella CHAPTER 3 Field emergence and laboratory germination of cysts of the toxic 59 dinoflagellate Alexandrium catenella in response to vernal warming CHAPTER 4 Temperature modulation of dormancy transitions, germination, 93 and division as a determinant of Alexandrium catenella bloom initiation CHAPTER 5 Summary and conclusion 137 APPENDIX The persistence of Alexandrium catenella cyst seedbeds in Nauset 151 Marsh 3 4 Acknowledgements These past six years have been an incredible journey, both scientifically and personally. But it would not have been possible without the support and collaboration of many people and groups.