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The Planktonic Protist Interactome: Where Do We Stand After a Century of Research?
bioRxiv preprint doi: https://doi.org/10.1101/587352; this version posted May 2, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Bjorbækmo et al., 23.03.2019 – preprint copy - BioRxiv The planktonic protist interactome: where do we stand after a century of research? Marit F. Markussen Bjorbækmo1*, Andreas Evenstad1* and Line Lieblein Røsæg1*, Anders K. Krabberød1**, and Ramiro Logares2,1** 1 University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N- 0316 Oslo, Norway 2 Institut de Ciències del Mar (CSIC), Passeig Marítim de la Barceloneta, 37-49, ES-08003, Barcelona, Catalonia, Spain * The three authors contributed equally ** Corresponding authors: Ramiro Logares: Institute of Marine Sciences (ICM-CSIC), Passeig Marítim de la Barceloneta 37-49, 08003, Barcelona, Catalonia, Spain. Phone: 34-93-2309500; Fax: 34-93-2309555. [email protected] Anders K. Krabberød: University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N-0316 Oslo, Norway. Phone +47 22845986, Fax: +47 22854726. [email protected] Abstract Microbial interactions are crucial for Earth ecosystem function, yet our knowledge about them is limited and has so far mainly existed as scattered records. Here, we have surveyed the literature involving planktonic protist interactions and gathered the information in a manually curated Protist Interaction DAtabase (PIDA). In total, we have registered ~2,500 ecological interactions from ~500 publications, spanning the last 150 years. -
Differentiating Two Closely Related Alexandrium Species Using Comparative Quantitative Proteomics
toxins Article Differentiating Two Closely Related Alexandrium Species Using Comparative Quantitative Proteomics Bryan John J. Subong 1,2,* , Arturo O. Lluisma 1, Rhodora V. Azanza 1 and Lilibeth A. Salvador-Reyes 1,* 1 Marine Science Institute, University of the Philippines- Diliman, Velasquez Street, Quezon City 1101, Philippines; [email protected] (A.O.L.); [email protected] (R.V.A.) 2 Department of Chemistry, The University of Tokyo, 7-3-1 Hongo, Bunkyo City, Tokyo 113-8654, Japan * Correspondence: [email protected] (B.J.J.S.); [email protected] (L.A.S.-R.) Abstract: Alexandrium minutum and Alexandrium tamutum are two closely related harmful algal bloom (HAB)-causing species with different toxicity. Using isobaric tags for relative and absolute quantita- tion (iTRAQ)-based quantitative proteomics and two-dimensional differential gel electrophoresis (2D-DIGE), a comprehensive characterization of the proteomes of A. minutum and A. tamutum was performed to identify the cellular and molecular underpinnings for the dissimilarity between these two species. A total of 1436 proteins and 420 protein spots were identified using iTRAQ-based proteomics and 2D-DIGE, respectively. Both methods revealed little difference (10–12%) between the proteomes of A. minutum and A. tamutum, highlighting that these organisms follow similar cellular and biological processes at the exponential stage. Toxin biosynthetic enzymes were present in both organisms. However, the gonyautoxin-producing A. minutum showed higher levels of osmotic growth proteins, Zn-dependent alcohol dehydrogenase and type-I polyketide synthase compared to the non-toxic A. tamutum. Further, A. tamutum had increased S-adenosylmethionine transferase that may potentially have a negative feedback mechanism to toxin biosynthesis. -
Assessing Allelopathic Effects of Alexandrium Fundyense on Thalassiosira SP
The University of Maine DigitalCommons@UMaine Electronic Theses and Dissertations Fogler Library 12-2012 Assessing Allelopathic Effects of Alexandrium Fundyense on Thalassiosira SP. Emily R. Lyczkowski Follow this and additional works at: http://digitalcommons.library.umaine.edu/etd Part of the Oceanography Commons Recommended Citation Lyczkowski, Emily R., "Assessing Allelopathic Effects of Alexandrium Fundyense on Thalassiosira SP." (2012). Electronic Theses and Dissertations. 1861. http://digitalcommons.library.umaine.edu/etd/1861 This Open-Access Thesis is brought to you for free and open access by DigitalCommons@UMaine. It has been accepted for inclusion in Electronic Theses and Dissertations by an authorized administrator of DigitalCommons@UMaine. ASSESSING ALLELOPATHIC EFFECTS OF ALEXANDRIUM FUNDYENSE ON THALASSIOSIRA SP. By Emily R. Lyczkowski B.A. Colby College, 2008 A THESIS Submitted in Partial Fulfillment of the Requirements for the Degree of Master of Science (in Oceanography) The Graduate School The University of Maine December, 2012 Advisory Committee: Lee Karp-Boss, Associate Research Professor of Marine Sciences, Advisor Mary-Jane Perry, Professor of Marine Sciences David Townsend, Professor of Oceanography Mark Wells, Professor of Marine Sciences i ASSESSMENT OF ALLELOPATHIC EFFECTS OF ALEXANDRIUM FUNDYENSE ON THALASSIOSIRA SP. By Emily R. Lyczkowski Thesis Advisor: Dr. Lee Karp-Boss An Abstract of the Thesis Presented in Partial Fulfillment of the Requirements for the Degree of Master of Science (in Oceanography) December, 2012 Production of allelopathic chemicals by the toxic dinoflagellate Alexandrium fundyense is one suggested mechanism by which this relatively slow grower outcompetes other phytoplankton, particularly diatoms. Despite well documented allelopathic potential of Alexandrium spp., the potency is variable. -
Alexandrium Fundyense and A. Catenella) Have Minimal Apparent Evects on Oyster Hemocytes
Mar Biol (2007) 152:441–447 DOI 10.1007/s00227-007-0703-3 RESEARCH ARTICLE Toxic dinoXagellates (Alexandrium fundyense and A. catenella) have minimal apparent eVects on oyster hemocytes Hélène Hégaret · Gary H. Wikfors · Philippe Soudant · Christophe Lambert · Sandra E. Shumway · Jean Baptiste Bérard · Patrick Lassus Received: 1 August 2005 / Accepted: 9 April 2007 / Published online: 8 May 2007 © Springer-Verlag 2007 Abstract The possible eVect of Alexandrium spp. con- in C. virginica and measured toxin accumulation in C. taining paralytic shellWsh poisoning (PSP) toxins on the gigas. The only signiWcant correlation found was between hemocytes of oysters was tested experimentally. In one toxin accumulation at one temperature and higher numbers trial, eastern oysters, Crassostrea virginica Gmelin, were of circulating live and dead hemocytes in C. gigas. The PSP exposed to bloom concentrations of the sympatric dinoXa- toxins are known to interfere speciWcally with sodium- gellate, Alexandrium fundyense Balech, alone and in a channel function; therefore, the Wnding that the toxins had mixture with a non-toxic diatom, Thalassiosira weissXogii no eVect on measured hemocyte functions suggests that (Grun) Fryxell et Hasle. Subsequently, another experiment sodium-channel physiology is not important in these hemo- exposed PaciWc oysters, Crassostrea gigas Thunberg, to a cyte functions. Finally, because oysters were exposed to the mixed suspension of the sympatric, toxic species Alexand- living algae, not puriWed toxins, there was no evidence of rium catenella (Whedon et Kofoid) Balech, with T. bioactive compounds other than PSP toxins aVecting hemo- weissXogii. Measurements of numbers of oyster hemocytes, cytes in the two species of Alexandrium studied. -
Global Transcriptional Profiling of the Toxic Dinoflagellate Alexandrium
BMC Genomics BioMed Central Research article Open Access Global transcriptional profiling of the toxic dinoflagellate Alexandrium fundyense using Massively Parallel Signature Sequencing Deana L Erdner*1 and Donald M Anderson2 Address: 1Marine Science Institute, University of Texas at Austin, Port Aransas, Texas 78373, USA and 2Biology Department, Woods Hole Oceanographic Institution, Woods Hole MA 02543, USA Email: Deana L Erdner* - [email protected]; Donald M Anderson - [email protected] * Corresponding author Published: 25 April 2006 Received: 13 December 2005 Accepted: 25 April 2006 BMC Genomics 2006, 7:88 doi:10.1186/1471-2164-7-88 This article is available from: http://www.biomedcentral.com/1471-2164/7/88 © 2006 Erdner and Anderson; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: Dinoflagellates are one of the most important classes of marine and freshwater algae, notable both for their functional diversity and ecological significance. They occur naturally as free-living cells, as endosymbionts of marine invertebrates and are well known for their involvement in "red tides". Dinoflagellates are also notable for their unusual genome content and structure, which suggests that the organization and regulation of dinoflagellate genes may be very different from that of most eukaryotes. To investigate the content and regulation of the dinoflagellate genome, we performed a global analysis of the transcriptome of the toxic dinoflagellate Alexandrium fundyense under nitrate- and phosphate-limited conditions using Massively Parallel Signature Sequencing (MPSS). -
Insights Into Alexandrium Minutum Nutrient Acquisition, Metabolism and Saxitoxin Biosynthesis Through Comprehensive Transcriptome Survey
biology Article Insights into Alexandrium minutum Nutrient Acquisition, Metabolism and Saxitoxin Biosynthesis through Comprehensive Transcriptome Survey Muhamad Afiq Akbar 1, Nurul Yuziana Mohd Yusof 2 , Fathul Karim Sahrani 2, Gires Usup 2, Asmat Ahmad 1, Syarul Nataqain Baharum 3 , Nor Azlan Nor Muhammad 3 and Hamidun Bunawan 3,* 1 Department of Biological Sciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi 43600, Malaysia; muhdafi[email protected] (M.A.A.); [email protected] (A.A.) 2 Department of Earth Science and Environment, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi 43600, Malaysia; [email protected] (N.Y.M.Y.); [email protected] (F.K.S.); [email protected] (G.U.) 3 Institute of System Biology, Universiti Kebangsaan Malaysia, Bangi 43600, Malaysia; [email protected] (S.N.B.); [email protected] (N.A.N.M.) * Correspondence: [email protected]; Tel.: +60-389-214-570 Simple Summary: Alexandrium minutum is one of the causing organisms for the occurrence of harmful algae bloom (HABs) in marine ecosystems. This species produces saxitoxin, one of the deadliest neurotoxins which can cause human mortality. However, molecular information such as genes and proteins catalog on this species is still lacking. Therefore, this study has successfully Citation: Akbar, M.A.; Yusof, N.Y.M.; characterized several new molecular mechanisms regarding A. minutum environmental adaptation Sahrani, F.K.; Usup, G.; Ahmad, A.; and saxitoxin biosynthesis. Ultimately, this study provides a valuable resource for facilitating future Baharum, S.N.; Muhammad, N.A.N.; dinoflagellates’ molecular response to environmental changes. -
1 Alexandrium Fundyense Cyst Viability and Germling Survival in Light Vs
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Woods Hole Open Access Server 1 Alexandrium fundyense cyst viability and germling survival in light vs. dark at a constant low 2 temperature 3 Emil Vahtera1*, Bibiana G. Crespo1, Dennis J. McGillicuddy Jr.1, Kalle Olli2 and Donald M. Anderson1 4 1Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA 5 2Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, 51005 Tartu Estonia 6 7 Abstract 8 Both observations and models suggest that large-scale coastal blooms of Alexandrium fundyense in the 9 Gulf of Maine are seeded by deep-bottom cyst accumulation zones (“seed beds”) where cysts 10 germinate from the sediment surface or the overlying near-bottom nepheloid layers at water depths 11 exceeding 100 m. The germling cells and their vegetative progeny are assumed to be subject to modest 12 mortality while in complete darkness as they swim to illuminated surface waters. To test the validity of 13 this assumption we investigated in the laboratory cyst viability and the survival of the germling cells 14 and their vegetative progeny during prolonged exposure to darkness at a temperature of 6 °C, 15 simulating the conditions in deep Gulf of Maine waters. We isolated cysts from bottom sediments 16 collected in the Gulf of Maine under low red light and incubated them in 96-well tissue culture-plates 17 in culture medium under a 10:14h light: dark cycle and under complete darkness. Cyst viability was 18 high, with excystment frequency reaching 90% in the illuminated treatment after 30 days and in the 19 dark treatment after 50 days. -
The Windblown: Possible Explanations for Dinophyte DNA
bioRxiv preprint doi: https://doi.org/10.1101/2020.08.07.242388; this version posted August 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. The windblown: possible explanations for dinophyte DNA in forest soils Marc Gottschlinga, Lucas Czechb,c, Frédéric Mahéd,e, Sina Adlf, Micah Dunthorng,h,* a Department Biologie, Systematische Botanik und Mykologie, GeoBio-Center, Ludwig- Maximilians-Universität München, D-80638 Munich, Germany b Computational Molecular Evolution Group, Heidelberg Institute for Theoretical Studies, D- 69118 Heidelberg, Germany c Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA d CIRAD, UMR BGPI, F-34398, Montpellier, France e BGPI, Université de Montpellier, CIRAD, IRD, Montpellier SupAgro, Montpellier, France f Department of Soil Sciences, College of Agriculture and Bioresources, University of Saskatchewan, Saskatoon, S7N 5A8, SK, Canada g Eukaryotic Microbiology, Faculty of Biology, Universität Duisburg-Essen, D-45141 Essen, Germany h Centre for Water and Environmental Research (ZWU), Universität Duisburg-Essen, D- 45141 Essen, Germany Running title: Dinophytes in soils Correspondence M. Dunthorn, Eukaryotic Microbiology, Faculty of Biology, Universität Duisburg-Essen, Universitätsstrasse 5, D-45141 Essen, Germany Telephone number: +49-(0)-201-183-2453; email: [email protected] bioRxiv preprint doi: https://doi.org/10.1101/2020.08.07.242388; this version posted August 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Alexandrium Monilatum in the Lower Chesapeake Bay: Sediment Cyst Distribution and Potential Health Impacts on Crassostrea Virginica
W&M ScholarWorks Dissertations, Theses, and Masters Projects Theses, Dissertations, & Master Projects 2016 Alexandrium Monilatum in the Lower Chesapeake Bay: Sediment Cyst Distribution and Potential Health Impacts on Crassostrea Virginica Sarah Pease College of William and Mary - Virginia Institute of Marine Science, [email protected] Follow this and additional works at: https://scholarworks.wm.edu/etd Part of the Aquaculture and Fisheries Commons, Ecology and Evolutionary Biology Commons, and the Marine Biology Commons Recommended Citation Pease, Sarah, "Alexandrium Monilatum in the Lower Chesapeake Bay: Sediment Cyst Distribution and Potential Health Impacts on Crassostrea Virginica" (2016). Dissertations, Theses, and Masters Projects. Paper 1477068141. http://doi.org/10.21220/V5C30T This Thesis is brought to you for free and open access by the Theses, Dissertations, & Master Projects at W&M ScholarWorks. It has been accepted for inclusion in Dissertations, Theses, and Masters Projects by an authorized administrator of W&M ScholarWorks. For more information, please contact [email protected]. Alexandrium monilatum in the Lower Chesapeake Bay: Sediment Cyst Distribution and Potential Health Impacts on Crassostrea virginica ______________ A Thesis Presented to The Faculty of the School of Marine Science The College of William and Mary in Virginia In Partial Fulfillment of the Requirements for the Degree of Master of Science ______________ by Sarah K. D. Pease 2016 APPROVAL SHEET This thesis is submitted in partial fulfillment of the requirements for the degree of Master of Science _________________________________ Sarah K. D. Pease Approved, by the Committee, August 2016 __________________________________ Kimberly S. Reece, Ph.D. Committee Co-Chairman/Co-Advisor __________________________________ Wolfgang K. Vogelbein, Ph.D. -
Effects of Increasing Temperature and Acidification on the Growth And
The University of Maine DigitalCommons@UMaine Electronic Theses and Dissertations Fogler Library Winter 12-27-2018 Effects of Increasing Temperature and Acidification on the Growth and Competitive Success of Alexandrium Catenella from the Gulf of Maine Drajad Seto University of Maine, [email protected] Follow this and additional works at: https://digitalcommons.library.umaine.edu/etd Part of the Environmental Sciences Commons, and the Marine Biology Commons Recommended Citation Seto, Drajad, "Effects of Increasing Temperature and Acidification on the Growth and Competitive Success of Alexandrium Catenella from the Gulf of Maine" (2018). Electronic Theses and Dissertations. 3006. https://digitalcommons.library.umaine.edu/etd/3006 This Open-Access Thesis is brought to you for free and open access by DigitalCommons@UMaine. It has been accepted for inclusion in Electronic Theses and Dissertations by an authorized administrator of DigitalCommons@UMaine. For more information, please contact [email protected]. EFFECTS OF INCREASING TEMPERATURE AND ACIDIFICATION ON THE GROWTH AND COMPETITIVE SUCCESS OF ALEXANDRIUM CATENELLA FROM THE GULF OF MAINE By Drajad Seto S.Pi. Universitas Gadjah Mada, 2014 A THESIS Submitted in Partial Fulfillment of the Requirements for the Degree of Master of Science (in Marine Biology) The Graduate School The University of Maine December 2018 Advisory Committee: Mark L. Wells, Professor of Oceanography, Co-Advisor Lee Karp-Boss, Associate Professor of Oceanography, Co-Advisor David W. Townsend, Professor of Oceanography Lawrence M. Mayer, Professor of Oceanography EFFECTS OF INCREASING TEMPERATURE AND ACIDIFICATION ON THE GROWTH AND COMPETITIVE SUCCESS OF ALEXANDRIUM CATENELLA FROM THE GULF OF MAINE By Drajad S. -
Biosecurity Monitoring of Harmful Algal Bloom (HAB) Species in Western Australian Waters: First Confirmed Record of Alexandrium Catenella (Dinophyceae)
BioInvasions Records (2015) Volume 4, Issue 4: 233–241 Open Access doi: http://dx.doi.org/10.3391/bir.2015.4.4.01 © 2015 The Author(s). Journal compilation © 2015 REABIC Rapid Communication Biosecurity monitoring of Harmful Algal Bloom (HAB) species in Western Australian waters: first confirmed record of Alexandrium catenella (Dinophyceae) 1,2 1 3,4 1 P. Joana Dias *, Julieta Muñoz , John M. Huisman and Justin I. McDonald 1Department of Fisheries, Government of Western Australia, PO Box 20 North Beach 6920 Western Australia 2School of Animal Biology, University of Western Australia, 35 Stirling Highway, Crawley 6009 Western Australia 3Western Australian Herbarium, Science Division, Department of Parks and Wildlife, Bentley Delivery Centre, Bentley 6983 Western Australia 4School of Veterinary and Life Sciences, Murdoch University, Murdoch 6150 Western Australia E-mail: [email protected] (PJD), [email protected] (JM), [email protected] (JMH), [email protected] (JIM) *Corresponding author Received: 6 March 2015 / Accepted: 8 June 2015 / Published online: 23 June 2015 Handling editor: Sarah Bailey Abstract The Australian National System for the Prevention and Management of Introduced Marine Pest Incursions has identified seven Harmful Algal Bloom (HAB) toxic dinoflagellate species as target species of concern. Alexandrium minutum Halim, 1960, and Alexandrium cf. tamarense (Lebour) Balech, 1995, are currently known to occur in south-western estuaries and coastal waters but with no documented impact on the seafood industry or human health. Monitoring of these species is challenging, time-consuming, expensive, and often relies on traditional morphotaxonomy. This reports the first confirmed detection of another HAB species, Alexandrium catenella (Whedon and Kofoid) Balech, 1995, in Western Australia (WA), using both microscopic and molecular methods. -
Identification and Enumeration of Alexandrium Spp. from the Gulf Of
ARTICLE IN PRESS Deep-Sea Research II 52 (2005) 2467–2490 www.elsevier.com/locate/dsr2 Identification and enumeration of Alexandrium spp. from the Gulf of Maine using molecular probes Donald M. Andersona,Ã, David M. Kulisa, Bruce A. Keafera, Kristin E. Gribblea, Roman Marinb, Christopher A. Scholinb aBiology Department, MS #32, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA bMonterey Bay Aquarium Research Institute, 7700 Sandholdt Road, Moss Landing, CA 95039, USA Accepted 18 June 2005 Abstract Three different molecular methods were used with traditional brightfield microscope techniques to enumerate the toxic dinoflagellate Alexandrium fundyense in samples collected in the Gulf of Maine in 1998, 2000, 2001, and 2003. Two molecular probes were used in fluorescent whole-cell (WC) microscopic assays: a large-subunit ribosomal RNA (LSU rRNA) oligonucleotide probe (NA1) and a monoclonal antibody probe thought to be specific for Alexandrium spp. within the tamarense/catenella/fundyense complex. Cell abundance estimates also were obtained using the NA1 oligonucleotide probe in a semi-quantitative sandwich hybridization assay (SHA) that quantified target rRNA in cell lysates. Here we compare and contrast the specificity and utility of these probe types and assay approaches. WC counts of the 1998 field samples demonstrated that A. fundyense cell densities estimated using the antibody approach were higher than those using either the NA1 oligonucleotide or brightfield microscopy due to the co-occurrence of A. ostenfeldii with A. fundyense, and the inability of the antibody to discriminate between these two species. An approach using cell size and the presence or absence of food vacuoles allowed more accurate immunofluorescent cell counts of both species, but small cells of A.