Characterization of New Thioacidolysis Products of Sinapyl Aldehyde and Coniferyl Aldehyde
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ABSTRACT SONG, XIAO. Investigating the Role and Structure of Free Radicals in Lignin Biosynthesis
ABSTRACT SONG, XIAO. Investigating the Role and Structure of Free Radicals in Lignin Biosynthesis. (Under the direction of Prof. Tatyana Smirnova). Lignin is the second most abundant biopolymer on earth after cellulose that contributes to the overall viability and sustainability of the plant kingdom. Understanding molecular details of the lignin formation and cross-linking is of fundamental importance to production of biomass streams. Although the processes of monolignols oxidative dehydrogenation, polymerization and cross-linking to cell walls are proposed to occur through a free radical mechanism, the specific details remain elusive. In order to understand molecular mechanisms of these reactions, we investigated formation of radicals during enzyme-catalyzed (HRP or Laccase) oxidative dehydrogenation of twelve monolignols. To characterize short-lived radicals formed during the enzymatic reaction we employed EPR spectroscopy in combination with spin-trapping technique and deduced the structures and spatial conformations of radicals. We also utilized continuous- flow EPR in combination with enzyme surface immobilization to detect the formation of transient monolignol radicals and thus patterned their isotropic hyperfine parameters that allow for the mapping of unpaired electron distribution. Polymerized radicals formed as a result of the coupling of enzyme-generated monolignol radicals. The effective -factors and ∆퐻푃−푃 of EPR spectra of polymerized radicals could be used as a reference to identify the polymeric radicals obtained from monolignols by different methods and paramagnetic species in natural lignin. We further generated a monolignol radical using consecutive enzymatic deglucosidation and oxidative dehydrogenation of a monolignol glucoside. This approach could be used to probe the isotropic hyperfine interactions of radical structures of monolignols with limited solubility in water by continuous-flow EPR method, especially for monolignol hydroxycinnamate conjugate compounds whose isotropic hyperfine component have not been studied yet. -
Metabolomics by UHPLC-Q-TOF Reveals Host Tree-Dependent Phytochemical Variation in Viscum Album L
plants Article Metabolomics by UHPLC-Q-TOF Reveals Host Tree-Dependent Phytochemical Variation in Viscum album L. Tim Jäger 1,2,3,†, Carla Holandino 1,4,* , Michelle Nonato de Oliveira Melo 4,5 , Evelyn Maribel Condori Peñaloza 4,5, Adriana Passos Oliveira 4, Rafael Garrett 5 , Gaétan Glauser 6 , Mirio Grazi 1, Hartmut Ramm 1, Konrad Urech 1 and Stephan Baumgartner 1,3,7,* 1 Society for Cancer Research, Hiscia Institute, Kirschweg 9, 4144 Arlesheim, Switzerland; [email protected] (T.J.); [email protected] (M.G.); [email protected] (H.R.); [email protected] (K.U.) 2 Center for Complementary Medicine, Institute for Infection Prevention and Hospital Epidemiology, Faculty of Medicine, University of Freiburg, Breisacher Str. 115b, 79106 Freiburg, Germany 3 Institute of Integrative Medicine, University of Witten/Herdecke, Gerhard-Kienle-Weg 4, 58313 Herdecke, Germany 4 Laboratório Multidisciplinar de Ciências Farmacêuticas, Pharmacy College, Federal University of Rio de Janeiro, Rio de Janeiro 21941-902, Brazil; [email protected] (M.N.d.O.M.); [email protected] (E.M.C.P.); [email protected] (A.P.O.) 5 Metabolomics Laboratory, Chemistry Institute, Federal University of Rio de Janeiro, Rio de Janeiro 21941-598, Brazil; [email protected] 6 Neuchatel Platform of Analytical Chemistry, University of Neuchâtel, Avenue de Bellevaux 51, 2000 Neuchâtel, Switzerland; [email protected] 7 Institute of Complementary and Integrative Medicine, University of Bern, Freiburgstrasse 46, 3010 Bern, Switzerland * Correspondence: [email protected] (C.H.); [email protected] (S.B.) † Deceased 1 March 2019. Citation: Jäger, T.; Holandino, C.; Abstract: Viscum album L., commonly known as European mistletoe, is a hemi-parasitic plant of Melo, M.N.d.O.; Peñaloza, E.M.C.; the Santalaceae family. -
Accumulation and Secretion of Coumarinolignans and Other Coumarins in Arabidopsis Thaliana Roots in Response to Iron Deficiency
Accumulation and Secretion of Coumarinolignans and other Coumarins in Arabidopsis thaliana Roots in Response to Iron Deficiency at High pH Patricia Siso-Terraza, Adrian Luis-Villarroya, Pierre Fourcroy, Jean-Francois Briat, Anunciacion Abadia, Frederic Gaymard, Javier Abadia, Ana Alvarez-Fernandez To cite this version: Patricia Siso-Terraza, Adrian Luis-Villarroya, Pierre Fourcroy, Jean-Francois Briat, Anunciacion Aba- dia, et al.. Accumulation and Secretion of Coumarinolignans and other Coumarins in Arabidopsis thaliana Roots in Response to Iron Deficiency at High pH. Frontiers in Plant Science, Frontiers, 2016, 7, pp.1711. 10.3389/fpls.2016.01711. hal-01417731 HAL Id: hal-01417731 https://hal.archives-ouvertes.fr/hal-01417731 Submitted on 15 Dec 2016 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. fpls-07-01711 November 21, 2016 Time: 15:23 # 1 ORIGINAL RESEARCH published: 23 November 2016 doi: 10.3389/fpls.2016.01711 Accumulation and Secretion of Coumarinolignans and other Coumarins in Arabidopsis thaliana Roots in Response to Iron Deficiency at -
Lignin from Bark As a Resource for Aromatics Production by Hydrothermal Liquefaction
Received: 24 April 2018 | Revised: 25 July 2018 | Accepted: 3 August 2018 DOI: 10.1111/gcbb.12562 ORIGINAL RESEARCH Lignin from bark as a resource for aromatics production by hydrothermal liquefaction Julia Schuler1 | Ursel Hornung1 | Nicolaus Dahmen1 | Jörg Sauer1 Institute for Catalysis Research and Technology, Karlsruhe Institute of Abstract Technology (KIT), Eggenstein‐ Biorefineries, which are using mostly unused side streams of other existing pro- Leopoldshafen, Germany cesses like bark or lignin, have a huge potential to open new resources, for exam- Correspondence ple, chemicals. But with new resources new challenges will be met along the Julia Schuler, Institute for Catalysis way. These challenges must be addressed and discussed to build a solid and far‐ Research and Technology, Karlsruhe sighted process. This work focuses on the formation of monocyclic compounds Institute of Technology (KIT), Eggenstein‐ Leopoldshafen, Germany. like catechol as a valuable product during the hydrothermal liquefaction of beech Email: [email protected] wood bark as well as Kraft lignin from pine wood like Indulin AT. The focus is Funding information to get a better knowledge of the behavior of bark during hydrothermal liquefac- Ministry of Science, Research and the tion for depolymerization aiming at the production of aromatic building blocks Arts of Baden‐Württemberg, Grant/Award for chemicals. Therefore, the influence, for example, of temperature and reaction Number: 200007 time, the chemical reaction pathways, and the therefore necessary analytics need to be understood. Several limitations and challenges of common analytical meth- ods are discussed and compared for bark and Kraft lignin, which is relatively well investigated and can act as a reference material to build a common ground and make it possible to build standards for all bioeconomic processes. -
Global Journal of Research in Engineering
Online ISSN : 2249-4596 Print ISSN : 0975-5861 DOI : 10.17406/GJRE SolarCellApplication GravitySeparationAndLeaching AzaraNassarawaBariteMineralOre WasteWoodfromaParquetFactory VOLUME17ISSUE5VERSION1.0 Global Journal of Researches in Engineering: J General Engineering Global Journal of Researches in Engineering: J General Engineering Volume 17 Issue 5 (Ver. 1.0) Open Association of Research Society Global Journals Inc. © Global Journal of (A Delaware USA Incorporation with “Good Standing”; Reg. Number: 0423089) Sponsors:Open Association of Research Society Researches in Engineering. Open Scientific Standards 2017. All rights reserved. Publisher’s Headquarters office This is a special issue published in version 1.0 ® of “Global Journal of Researches in Global Journals Headquarters Engineering.” By Global Journals Inc. 945th Concord Streets, All articles are open access articles distributed Framingham Massachusetts Pin: 01701, under “Global Journal of Researches in Engineering” United States of America Reading License, which permits restricted use. USA Toll Free: +001-888-839-7392 Entire contents are copyright by of “Global USA Toll Free Fax: +001-888-839-7392 Journal of Researches in Engineering” unless otherwise noted on specific articles. Offset Typesetting No part of this publication may be reproduced or transmitted in any form or by any means, Global Journals Incorporated electronic or mechanical, including photocopy, recording, or any information 2nd, Lansdowne, Lansdowne Rd., Croydon-Surrey, storage and retrieval system, without written Pin: CR9 2ER, United Kingdom permission. The opinions and statements made in this Packaging & Continental Dispatching book are those of the authors concerned. Ultraculture has not verified and neither confirms nor denies any of the foregoing and Global Journals Pvt Ltd no warranty or fitness is implied. -
Biosynthesis of Phenylpropane
Biosynthesis of Phenylpropane David Wang’s Wood Components Synthesis’s Class Phenylpropane n Phenylpropane derivatives are compounds composed of a C6-C3 carbon skeleton comprised of an aromatic ring with a propane side chain. n Phenylpropanoids are considered to be essential for plant life. n Dehydrodiconiferyl alcohol glucoside: dividing plant cells and acts as a cytokinin. n Flavonoid : polar transportation of auxin. n Flavonoids pigments: protect growing meristems against UV. n Isofavonoids and furanocoumarine: antibiotic and phytoalexin and protect plants from diseases. Lignin n Lignin is the second abundant and important organic substance in the plant world. n The incorporation of lignin into the cell walls of plants gave them the chance to conquer the Earth’s land surface. n Lignin increased the mechanical strength properties to such an extent that huge plants such as trees with heights of even more than 100 m can remain upright. Outline of the Biosynthetic Pathway of Phenylpropanoids Phenylpropanoid pathway n Shikimate pathway commonly involved in the biosynthesis of many aromatic compounds. n Biosynthesis of phenylalanine and tyrosine. n General phenylprpanoid pathway to afford 4-coumaroyl-Co-A. n Pathways for lignin and lignans etc. associated with general phenylpropanoid pathway. General Biosynthesis Pathway of Plant Phenolic compounds Malonic acid pathway Acetyl-CoA Phenolic compounds (C6-C3-C6)n D-erythose 4-phosphate C6-C3-C6 Shikimate Cinnamate pathway pathway C6-C1 C6-C3 (C6-C3)2 (C6-C3)n L-Phenylalanine Cinnamic acid Phosphoenol -
Comparative Transcriptional Analysis of Caffeoyl-Coenzyme a 3-O
POJ 5(2):184-193 (2012) ISSN:1836-3644 Comparative transcriptional analysis of caffeoyl-coenzyme A 3-O-methyltransferase from Hibiscus cannabinus L., during developmental stages in various tissues and stress regulation Ritesh Ghosh1, Bo Sung Choi1, Mi-Jeong Jeong2, Dong Won Bae3, Sung Chul Shin4, Sang Un Park5, Hyoun-Sub Lim6, Jongkee Kim7, Hanhong Bae1,* 1School of Biotechnology, Yeungnam University, Gyeongsan 712-749, Korea 2National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, Korea 3Central Laboratory, Gyeongsang National University, Jinju, 660-701, Korea 4Department of Chemistry and Research Institute of Life Science, Gyeongsang National University, Jinju 660- 701, Korea 5Department of Crop Science, Chungnam National University, Daejeon 305-754, Korea 6Department of Applied Biology, Chungnam National University, Daejeon 305-764, Korea 7Department of Applied Plant Science, Chung-Ang University, Anseong 456-756, Korea *Corresponding author: [email protected] Abstract We have cloned a full-length gene, putatively encoding for caffeoyl-coenzyme A 3-O-methyltransferase (CCoAOMT), an important enzyme involved in lignin biosynthesis, from kenaf (Hibiscus cannabinus L.). Herein, we investigated the expression pattern of a CCoAOMT orthologue from various tissues and organs during development, and in response to different environmental cues. The full-length CCoAOMT orthologue of kenaf consists of a 744 bp open reading frame (ORF), encoding for 247 amino acids of 27.91 kDa and an isoelectric point (pI) of 5.43. The deduced amino acids of CCoAOMT evidenced a high degree of identity (up to 84%) with other plant CCoAOMT sequences. Phylogenetic analysis demonstrated its close relationship with the CCoAOMT of Gossypium hirsutum (ACQ59096). -
Accumulation and Secretion of Coumarinolignans and Other Coumarins in Arabidopsis Thaliana Roots in Response to Iron Deficiency at High Ph
fpls-07-01711 November 21, 2016 Time: 15:23 # 1 ORIGINAL RESEARCH published: 23 November 2016 doi: 10.3389/fpls.2016.01711 Accumulation and Secretion of Coumarinolignans and other Coumarins in Arabidopsis thaliana Roots in Response to Iron Deficiency at High pH Patricia Sisó-Terraza1†, Adrián Luis-Villarroya1†, Pierre Fourcroy2‡, Jean-François Briat2, Anunciación Abadía1, Frédéric Gaymard2, Javier Abadía1 and Ana Álvarez-Fernández1* 1 Plant Stress Physiology Group, Department of Plant Nutrition, Aula Dei Experimental Station, Consejo Superior de Investigaciones Científicas, Zaragoza, Spain, 2 Biochimie et Physiologie Moléculaire des Plantes, Centre National de la Edited by: Recherche Scientifique, Institut National de la Recherche Agronomique, Université Montpellier, Montpellier, France Janin Riedelsberger, University of Talca, Chile Root secretion of coumarin-phenolic type compounds has been recently shown to Reviewed by: Stefano Cesco, be related to Arabidopsis thaliana tolerance to Fe deficiency at high pH. Previous Free University of Bozen-Bolzano, Italy studies revealed the identity of a few simple coumarins occurring in roots and exudates Dierk Scheel, of Fe-deficient A. thaliana plants, and left open the possible existence of other Leibniz Institute of Plant Biochemistry, Germany unknown phenolics. We used HPLC-UV/VIS/ESI-MS(TOF), HPLC/ESI-MS(ion trap) and *Correspondence: HPLC/ESI-MS(Q-TOF) to characterize (identify and quantify) phenolic-type compounds Ana Álvarez-Fernández accumulated in roots or secreted into the nutrient solution of A. thaliana plants in [email protected] response to Fe deficiency. Plants grown with or without Fe and using nutrient solutions †These authors have contributed equally to this work. buffered at pH 5.5 or 7.5 enabled to identify an array of phenolics. -
Para-Coumaryl Coniferyl Sinapyl Alcohol Alcohol Alcohol Patent Application Publication Dec
US 2003O226168A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2003/0226168 A1 Carlson (43) Pub. Date: Dec. 4, 2003 (54) PLANT PREPARATIONS Publication Classification (76) Inventor: Peter S. Carlson, Chevy Chase, MD (51) Int. Cl. ............................ A01H 1700; C12N 15/82; (US) C12O 1/18 Correspondence Address: (52) U.S. Cl. .............................................. 800/279; 435/32 FOLEY AND LARDNER SUTE 500 (57) ABSTRACT 3000 KSTREET NW WASHINGTON, DC 20007 (US) The present invention provides methods for slowing down (21) Appl. No.: 10/366,720 the rate at which plant biomaterials, Such as lignin, are degraded, thereby improving the terrestrial Storage of carbon (22) Filed: Feb. 14, 2003 by reducing the amount of gaseous carbon dioxide released Related U.S. Application Data into the atmosphere upon biodegradation. The inventive methods contemplate the modification of plant macromol (60) Provisional application No. 60/403,650, filed on Aug. ecules to make them more resistant to degradation as well as 16, 2002. Provisional application No. 60/356,730, the treatment of living and non-living plants with fungicides filed on Feb. 15, 2002. to prolong the rate of plant breakdown. CH2OH CH2OH CHOH 1. 1. 1 OCH3 H3CO OCH3 OH OH OH para-coumaryl coniferyl sinapyl alcohol alcohol alcohol Patent Application Publication Dec. 4, 2003. Sheet 1 of 4 US 2003/0226168A1 ZHOHO?HOHOZHOHO £HOOOOºH£HOO HOHOHO Patent Application Publication Dec. 4, 2003. Sheet 3 of 4 US 2003/0226168A1 Á??Su??u|6u?u?e?su????OS -0||Á?Sue?u?6u?u?e?su?uô?T-||-------------------------------- uosuno?udp????polN AISueu fuuleS Patent Application Publication Dec. -
HPLC-DAD-ESI-QTOF-MS Determination of Bioactive Compounds and Antioxidant Activity Comparison of the Hydroalcoholic and Water Ex
H OH metabolites OH Article HPLC-DAD-ESI-QTOF-MS Determination of Bioactive Compounds and Antioxidant Activity Comparison of the Hydroalcoholic and Water Extracts from Two Helichrysum italicum Species Katja Kramberger 1,2 , Darja Barliˇc-Maganja 1, Dunja Bandelj 3, Alenka Baruca Arbeiter 3, Kelly Peeters 4,5, Ana MiklavˇciˇcVišnjevec 3,* and Zala Jenko Pražnikar 1,* 1 Faculty of Health Sciences, University of Primorska, 6310 Izola, Slovenia; [email protected] (K.K.); [email protected] (D.B.-M.) 2 Faculty of Medicine, University of Ljubljana, 1000 Ljubljana, Slovenia 3 Faculty of Mathematics, Natural Sciences and Information Technologies, University of Primorska, 6000 Koper, Slovenia; [email protected] (D.B.); [email protected] (A.B.A.) 4 InnoRenew CoE, 6310 Izola, Slovenia; [email protected] 5 Andrej MarušiˇcInstitute, University of Primorska, 6000 Koper, Slovenia * Correspondence: [email protected] (A.M.V.); [email protected] (Z.J.P.); Tel.: +386-05-662-6469 (Z.J.P.) Received: 4 September 2020; Accepted: 8 October 2020; Published: 12 October 2020 Abstract: Mediterranean plant Helichrysum italicum represents a rich source of versatile bioactive compounds with potential benefits for human health. Despite extensive research on the plant’s active constituents, little attention has yet been paid to characterizing the relationship between its intra-specific genetic diversity and metabolite profile. The study aimed to determine metabolic profile of H. italicum ssp. italicum (HII) and ssp. tyrrhenicum (HIT) cultivated on the experimental plantation in Slovenia and to compare the chemical composition of extracts regarding the solvent extraction process. Extracts were prepared upon conventional extract preparation procedures: maceration with 50 % methanol or ethanol and cold or hot water infusion and analyzed using High Performance Liquid Chromatography-Diode Array Detection-Electrospray Ionization-Quadrupole Time-of-Flight-Mass Spectrometry (HPLC-DAD-ESI-QTOF-MS). -
Metabolic Changes of Cholangiocarcinoma Cells in Response to Coniferyl Alcohol Treatment
biomolecules Article Metabolic Changes of Cholangiocarcinoma Cells in Response to Coniferyl Alcohol Treatment Bundit Promraksa 1,2, Praewpan Katrun 3,4, Jutarop Phetcharaburanin 1,2,3,5 , Yingpinyapat Kittirat 1,2, Nisana Namwat 1,2 , Anchalee Techasen 2,6, Jia V. Li 7 and Watcharin Loilome 1,2,* 1 Department of Biochemistry, Faculty of Medicine, Khon Kaen University, Khon Kaen 40002, Thailand; [email protected] (B.P.); [email protected] (J.P.); [email protected] (Y.K.); [email protected] (N.N.) 2 Cholangiocarcinoma Research Institute, Faculty of Medicine, Khon Kaen University, Khon Kaen 40002, Thailand; [email protected] 3 Center of Excellence for Innovation in Chemistry, Faculty of Science, Khon Kaen University, Khon Kaen 40002, Thailand; [email protected] 4 Department of Chemistry, Khon Kaen University, Khon Kaen 40002, Thailand 5 International Phenome Laboratory, Northeastern Science Park, Khon Kaen University, Khon Kaen 40002, Thailand 6 Faculty of Associated Medical Science, Khon Kaen University, Khon Kaen 40002, Thailand 7 Department of Metabolism, Digestion and Reproduction, Faculty of Medicine, Imperial College London, London SW7 2AZ, UK; [email protected] * Correspondence: [email protected] Abstract: Cholangiocarcinoma (CCA) is a major cause of mortality in Northeast Thailand with about 14,000 deaths each year. There is an urgent necessity for novel drug discovery to increase effective Citation: Promraksa, B.; Katrun, P.; treatment possibilities. A recent study reported that lignin derived from Scoparia dulcis can cause Phetcharaburanin, J.; Kittirat, Y.; CCA cell inhibition. However, there is no evidence on the inhibitory effect of coniferyl alcohol (CA), Namwat, N.; Techasen, A.; Li, J.V.; which is recognized as a major monolignol-monomer forming a very complex structure of lignin. -
Wood Based Lignin Reactions Important to the Biorefinery and Pulp and Paper Industries
PEER-REVIEWED REVIEW ARTICLE bioresources.com Wood Based Lignin Reactions Important to the Biorefinery and Pulp and Paper Industries Ricardo B. Santos,a,* Peter W. Hart,a Hasan Jameel,b and Hou-min Chang b The cleavage of lignin bonds in a wood matrix is an important step in the processes employed in both the biorefinery and pulp and paper industries. β-O-4 ether linkages are susceptible to both acidic and alkaline hydrolysis. The cleavage of α-ether linkages rapidly occurs under mildly acidic reaction conditions, resulting in lower molecular weight lignin fragments. Acidic reactions are typically employed in the biorefinery industries, while alkaline reactions are more typically employed in the pulp and paper industries, especially in the kraft pulping process. By better understanding lignin reactions and reaction conditions, it may be possible to improve silvicultural and breeding programs to enhance the formation of easily removable lignin, as opposed to more chemically resistant lignin structures. In hardwood species, the S/G ratio has been successfully correlated to the amount of β-O-4 ether linkages present in the lignin and the ease of pulping reactions. Keywords: Biorefinery; Lignin reactions; Kraft pulping; Cooking; Hardwood; Softwood; Enzymatic hydrolysis; S/G; S/V Contact information: a: MeadWestvaco Corporation, 501 South 5th Street, Richmond, VA, 23219, USA; b: Department of Forest Biomaterials, North Carolina State University, Box 8005, Raleigh, NC 27695-8005 USA; *Corresponding author: [email protected] INTRODUCTION Wood is a naturally occurring mixture of various organic polymers. Cellulose is a partially crystalline polymer that is reasonably chemical-resistant and has the ability to form hydrogen bonds.