Data Structures Binary Search Trees • Dictionary ADT / Search ADT • Quick Tree Review • Binary Search Trees
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Application of TRIE Data Structure and Corresponding Associative Algorithms for Process Optimization in GRID Environment
Application of TRIE data structure and corresponding associative algorithms for process optimization in GRID environment V. V. Kashanskya, I. L. Kaftannikovb South Ural State University (National Research University), 76, Lenin prospekt, Chelyabinsk, 454080, Russia E-mail: a [email protected], b [email protected] Growing interest around different BOINC powered projects made volunteer GRID model widely used last years, arranging lots of computational resources in different environments. There are many revealed problems of Big Data and horizontally scalable multiuser systems. This paper provides an analysis of TRIE data structure and possibilities of its application in contemporary volunteer GRID networks, including routing (L3 OSI) and spe- cialized key-value storage engine (L7 OSI). The main goal is to show how TRIE mechanisms can influence de- livery process of the corresponding GRID environment resources and services at different layers of networking abstraction. The relevance of the optimization topic is ensured by the fact that with increasing data flow intensi- ty, the latency of the various linear algorithm based subsystems as well increases. This leads to the general ef- fects, such as unacceptably high transmission time and processing instability. Logically paper can be divided into three parts with summary. The first part provides definition of TRIE and asymptotic estimates of corresponding algorithms (searching, deletion, insertion). The second part is devoted to the problem of routing time reduction by applying TRIE data structure. In particular, we analyze Cisco IOS switching services based on Bitwise TRIE and 256 way TRIE data structures. The third part contains general BOINC architecture review and recommenda- tions for highly-loaded projects. -
Trees • Binary Trees • Newer Types of Tree Structures • M-Ary Trees
Data Organization and Processing Hierarchical Indexing (NDBI007) David Hoksza http://siret.ms.mff.cuni.cz/hoksza 1 Outline • Background • prefix tree • graphs • … • search trees • binary trees • Newer types of tree structures • m-ary trees • Typical tree type structures • B-tree • B+-tree • B*-tree 2 Motivation • Similarly as in hashing, the motivation is to find record(s) given a query key using only a few operations • unlike hashing, trees allow to retrieve set of records with keys from given range • Tree structures use “clustering” to efficiently filter out non relevant records from the data set • Tree-based indexes practically implement the index file data organization • for each search key, an indexing structure can be maintained 3 Drawbacks of Index(-Sequential) Organization • Static nature • when inserting a record at the beginning of the file, the whole index needs to be rebuilt • an overflow handling policy can be applied → the performance degrades as the file grows • reorganization can take a lot of time, especially for large tables • not possible for online transactional processing (OLTP) scenarios (as opposed to OLAP – online analytical processing) where many insertions/deletions occur 4 Tree Indexes • Most common dynamic indexing structure for external memory • When inserting/deleting into/from the primary file, the indexing structure(s) residing in the secondary file is modified to accommodate the new key • The modification of a tree is implemented by splitting/merging nodes • Used not only in databases • NTFS directory structure -
CS 106X, Lecture 21 Tries; Graphs
CS 106X, Lecture 21 Tries; Graphs reading: Programming Abstractions in C++, Chapter 18 This document is copyright (C) Stanford Computer Science and Nick Troccoli, licensed under Creative Commons Attribution 2.5 License. All rights reserved. Based on slides created by Keith Schwarz, Julie Zelenski, Jerry Cain, Eric Roberts, Mehran Sahami, Stuart Reges, Cynthia Lee, Marty Stepp, Ashley Taylor and others. Plan For Today • Tries • Announcements • Graphs • Implementing a Graph • Representing Data with Graphs 2 Plan For Today • Tries • Announcements • Graphs • Implementing a Graph • Representing Data with Graphs 3 The Lexicon • Lexicons are good for storing words – contains – containsPrefix – add 4 The Lexicon root the art we all arts you artsy 5 The Lexicon root the contains? art we containsPrefix? add? all arts you artsy 6 The Lexicon S T A R T L I N G S T A R T 7 The Lexicon • We want to model a set of words as a tree of some kind • The tree should be sorted in some way for efficient lookup • The tree should take advantage of words containing each other to save space and time 8 Tries trie ("try"): A tree structure optimized for "prefix" searches struct TrieNode { bool isWord; TrieNode* children[26]; // depends on the alphabet }; 9 Tries isWord: false a b c d e … “” isWord: true a b c d e … “a” isWord: false a b c d e … “ac” isWord: true a b c d e … “ace” 10 Reading Words Yellow = word in the trie A E H S / A E H S A E H S A E H S / / / / / / / / A E H S A E H S A E H S A E H S / / / / / / / / / / / / A E H S A E H S A E H S / / / / / / / -
Amortized Analysis Worst-Case Analysis
Beyond Worst Case Analysis Amortized Analysis Worst-case analysis. ■ Analyze running time as function of worst input of a given size. Average case analysis. ■ Analyze average running time over some distribution of inputs. ■ Ex: quicksort. Amortized analysis. ■ Worst-case bound on sequence of operations. ■ Ex: splay trees, union-find. Competitive analysis. ■ Make quantitative statements about online algorithms. ■ Ex: paging, load balancing. Princeton University • COS 423 • Theory of Algorithms • Spring 2001 • Kevin Wayne 2 Amortized Analysis Dynamic Table Amortized analysis. Dynamic tables. ■ Worst-case bound on sequence of operations. ■ Store items in a table (e.g., for open-address hash table, heap). – no probability involved ■ Items are inserted and deleted. ■ Ex: union-find. – too many items inserted ⇒ copy all items to larger table – sequence of m union and find operations starting with n – too many items deleted ⇒ copy all items to smaller table singleton sets takes O((m+n) α(n)) time. – single union or find operation might be expensive, but only α(n) Amortized analysis. on average ■ Any sequence of n insert / delete operations take O(n) time. ■ Space used is proportional to space required. ■ Note: actual cost of a single insert / delete can be proportional to n if it triggers a table expansion or contraction. Bottleneck operation. ■ We count insertions (or re-insertions) and deletions. ■ Overhead of memory management is dominated by (or proportional to) cost of transferring items. 3 4 Dynamic Table: Insert Dynamic Table: Insert Dynamic Table Insert Accounting method. Initialize table size m = 1. ■ Charge each insert operation $3 (amortized cost). – use $1 to perform immediate insert INSERT(x) – store $2 in with new item IF (number of elements in table = m) ■ When table doubles: Generate new table of size 2m. -
Lecture 26 Fall 2019 Instructors: B&S Administrative Details
CSCI 136 Data Structures & Advanced Programming Lecture 26 Fall 2019 Instructors: B&S Administrative Details • Lab 9: Super Lexicon is online • Partners are permitted this week! • Please fill out the form by tonight at midnight • Lab 6 back 2 2 Today • Lab 9 • Efficient Binary search trees (Ch 14) • AVL Trees • Height is O(log n), so all operations are O(log n) • Red-Black Trees • Different height-balancing idea: height is O(log n) • All operations are O(log n) 3 2 Implementing the Lexicon as a trie There are several different data structures you could use to implement a lexicon— a sorted array, a linked list, a binary search tree, a hashtable, and many others. Each of these offers tradeoffs between the speed of word and prefix lookup, amount of memory required to store the data structure, the ease of writing and debugging the code, performance of add/remove, and so on. The implementation we will use is a special kind of tree called a trie (pronounced "try"), designed for just this purpose. A trie is a letter-tree that efficiently stores strings. A node in a trie represents a letter. A path through the trie traces out a sequence ofLab letters that9 represent : Lexicon a prefix or word in the lexicon. Instead of just two children as in a binary tree, each trie node has potentially 26 child pointers (one for each letter of the alphabet). Whereas searching a binary search tree eliminates half the words with a left or right turn, a search in a trie follows the child pointer for the next letter, which narrows the search• Goal: to just words Build starting a datawith that structure letter. -
Balanced Trees Part One
Balanced Trees Part One Balanced Trees ● Balanced search trees are among the most useful and versatile data structures. ● Many programming languages ship with a balanced tree library. ● C++: std::map / std::set ● Java: TreeMap / TreeSet ● Many advanced data structures are layered on top of balanced trees. ● We’ll see several later in the quarter! Where We're Going ● B-Trees (Today) ● A simple type of balanced tree developed for block storage. ● Red/Black Trees (Today/Thursday) ● The canonical balanced binary search tree. ● Augmented Search Trees (Thursday) ● Adding extra information to balanced trees to supercharge the data structure. Outline for Today ● BST Review ● Refresher on basic BST concepts and runtimes. ● Overview of Red/Black Trees ● What we're building toward. ● B-Trees and 2-3-4 Trees ● Simple balanced trees, in depth. ● Intuiting Red/Black Trees ● A much better feel for red/black trees. A Quick BST Review Binary Search Trees ● A binary search tree is a binary tree with 9 the following properties: 5 13 ● Each node in the BST stores a key, and 1 6 10 14 optionally, some auxiliary information. 3 7 11 15 ● The key of every node in a BST is strictly greater than all keys 2 4 8 12 to its left and strictly smaller than all keys to its right. Binary Search Trees ● The height of a binary search tree is the 9 length of the longest path from the root to a 5 13 leaf, measured in the number of edges. 1 6 10 14 ● A tree with one node has height 0. -
Lecture 04 Linear Structures Sort
Algorithmics (6EAP) MTAT.03.238 Linear structures, sorting, searching, etc Jaak Vilo 2018 Fall Jaak Vilo 1 Big-Oh notation classes Class Informal Intuition Analogy f(n) ∈ ο ( g(n) ) f is dominated by g Strictly below < f(n) ∈ O( g(n) ) Bounded from above Upper bound ≤ f(n) ∈ Θ( g(n) ) Bounded from “equal to” = above and below f(n) ∈ Ω( g(n) ) Bounded from below Lower bound ≥ f(n) ∈ ω( g(n) ) f dominates g Strictly above > Conclusions • Algorithm complexity deals with the behavior in the long-term – worst case -- typical – average case -- quite hard – best case -- bogus, cheating • In practice, long-term sometimes not necessary – E.g. for sorting 20 elements, you dont need fancy algorithms… Linear, sequential, ordered, list … Memory, disk, tape etc – is an ordered sequentially addressed media. Physical ordered list ~ array • Memory /address/ – Garbage collection • Files (character/byte list/lines in text file,…) • Disk – Disk fragmentation Linear data structures: Arrays • Array • Hashed array tree • Bidirectional map • Heightmap • Bit array • Lookup table • Bit field • Matrix • Bitboard • Parallel array • Bitmap • Sorted array • Circular buffer • Sparse array • Control table • Sparse matrix • Image • Iliffe vector • Dynamic array • Variable-length array • Gap buffer Linear data structures: Lists • Doubly linked list • Array list • Xor linked list • Linked list • Zipper • Self-organizing list • Doubly connected edge • Skip list list • Unrolled linked list • Difference list • VList Lists: Array 0 1 size MAX_SIZE-1 3 6 7 5 2 L = int[MAX_SIZE] -
Introduction to Linked List: Review
Introduction to Linked List: Review Source: http://www.geeksforgeeks.org/data-structures/linked-list/ Linked List • Fundamental data structures in C • Like arrays, linked list is a linear data structure • Unlike arrays, linked list elements are not stored at contiguous location, the elements are linked using pointers Array vs Linked List Why Linked List-1 • Advantages over arrays • Dynamic size • Ease of insertion or deletion • Inserting a new element in an array of elements is expensive, because room has to be created for the new elements and to create room existing elements have to be shifted For example, in a system if we maintain a sorted list of IDs in an array id[]. id[] = [1000, 1010, 1050, 2000, 2040] If we want to insert a new ID 1005, then to maintain the sorted order, we have to move all the elements after 1000 • Deletion is also expensive with arrays until unless some special techniques are used. For example, to delete 1010 in id[], everything after 1010 has to be moved Why Linked List-2 • Drawbacks of Linked List • Random access is not allowed. • Need to access elements sequentially starting from the first node. So we cannot do binary search with linked lists • Extra memory space for a pointer is required with each element of the list Representation in C • A linked list is represented by a pointer to the first node of the linked list • The first node is called head • If the linked list is empty, then the value of head is null • Each node in a list consists of at least two parts 1. -
Assignment 3: Kdtree ______Due June 4, 11:59 PM
CS106L Handout #04 Spring 2014 May 15, 2014 Assignment 3: KDTree _________________________________________________________________________________________________________ Due June 4, 11:59 PM Over the past seven weeks, we've explored a wide array of STL container classes. You've seen the linear vector and deque, along with the associative map and set. One property common to all these containers is that they are exact. An element is either in a set or it isn't. A value either ap- pears at a particular position in a vector or it does not. For most applications, this is exactly what we want. However, in some cases we may be interested not in the question “is X in this container,” but rather “what value in the container is X most similar to?” Queries of this sort often arise in data mining, machine learning, and computational geometry. In this assignment, you will implement a special data structure called a kd-tree (short for “k-dimensional tree”) that efficiently supports this operation. At a high level, a kd-tree is a generalization of a binary search tree that stores points in k-dimen- sional space. That is, you could use a kd-tree to store a collection of points in the Cartesian plane, in three-dimensional space, etc. You could also use a kd-tree to store biometric data, for example, by representing the data as an ordered tuple, perhaps (height, weight, blood pressure, cholesterol). However, a kd-tree cannot be used to store collections of other data types, such as strings. Also note that while it's possible to build a kd-tree to hold data of any dimension, all of the data stored in a kd-tree must have the same dimension. -
Advanced Data Structures
Advanced Data Structures PETER BRASS City College of New York CAMBRIDGE UNIVERSITY PRESS Cambridge, New York, Melbourne, Madrid, Cape Town, Singapore, São Paulo Cambridge University Press The Edinburgh Building, Cambridge CB2 8RU, UK Published in the United States of America by Cambridge University Press, New York www.cambridge.org Information on this title: www.cambridge.org/9780521880374 © Peter Brass 2008 This publication is in copyright. Subject to statutory exception and to the provision of relevant collective licensing agreements, no reproduction of any part may take place without the written permission of Cambridge University Press. First published in print format 2008 ISBN-13 978-0-511-43685-7 eBook (EBL) ISBN-13 978-0-521-88037-4 hardback Cambridge University Press has no responsibility for the persistence or accuracy of urls for external or third-party internet websites referred to in this publication, and does not guarantee that any content on such websites is, or will remain, accurate or appropriate. Contents Preface page xi 1 Elementary Structures 1 1.1 Stack 1 1.2 Queue 8 1.3 Double-Ended Queue 16 1.4 Dynamical Allocation of Nodes 16 1.5 Shadow Copies of Array-Based Structures 18 2 Search Trees 23 2.1 Two Models of Search Trees 23 2.2 General Properties and Transformations 26 2.3 Height of a Search Tree 29 2.4 Basic Find, Insert, and Delete 31 2.5ReturningfromLeaftoRoot35 2.6 Dealing with Nonunique Keys 37 2.7 Queries for the Keys in an Interval 38 2.8 Building Optimal Search Trees 40 2.9 Converting Trees into Lists 47 2.10 -
Search Trees
Lecture III Page 1 “Trees are the earth’s endless effort to speak to the listening heaven.” – Rabindranath Tagore, Fireflies, 1928 Alice was walking beside the White Knight in Looking Glass Land. ”You are sad.” the Knight said in an anxious tone: ”let me sing you a song to comfort you.” ”Is it very long?” Alice asked, for she had heard a good deal of poetry that day. ”It’s long.” said the Knight, ”but it’s very, very beautiful. Everybody that hears me sing it - either it brings tears to their eyes, or else -” ”Or else what?” said Alice, for the Knight had made a sudden pause. ”Or else it doesn’t, you know. The name of the song is called ’Haddocks’ Eyes.’” ”Oh, that’s the name of the song, is it?” Alice said, trying to feel interested. ”No, you don’t understand,” the Knight said, looking a little vexed. ”That’s what the name is called. The name really is ’The Aged, Aged Man.’” ”Then I ought to have said ’That’s what the song is called’?” Alice corrected herself. ”No you oughtn’t: that’s another thing. The song is called ’Ways and Means’ but that’s only what it’s called, you know!” ”Well, what is the song then?” said Alice, who was by this time completely bewildered. ”I was coming to that,” the Knight said. ”The song really is ’A-sitting On a Gate’: and the tune’s my own invention.” So saying, he stopped his horse and let the reins fall on its neck: then slowly beating time with one hand, and with a faint smile lighting up his gentle, foolish face, he began.. -
Splay Trees Last Changed: January 28, 2017
15-451/651: Design & Analysis of Algorithms January 26, 2017 Lecture #4: Splay Trees last changed: January 28, 2017 In today's lecture, we will discuss: • binary search trees in general • definition of splay trees • analysis of splay trees The analysis of splay trees uses the potential function approach we discussed in the previous lecture. It seems to be required. 1 Binary Search Trees These lecture notes assume that you have seen binary search trees (BSTs) before. They do not contain much expository or backtround material on the basics of BSTs. Binary search trees is a class of data structures where: 1. Each node stores a piece of data 2. Each node has two pointers to two other binary search trees 3. The overall structure of the pointers is a tree (there's a root, it's acyclic, and every node is reachable from the root.) Binary search trees are a way to store and update a set of items, where there is an ordering on the items. I know this is rather vague. But there is not a precise way to define the gamut of applications of search trees. In general, there are two classes of applications. Those where each item has a key value from a totally ordered universe, and those where the tree is used as an efficient way to represent an ordered list of items. Some applications of binary search trees: • Storing a set of names, and being able to lookup based on a prefix of the name. (Used in internet routers.) • Storing a path in a graph, and being able to reverse any subsection of the path in O(log n) time.