Port of Nelson Second Baseline Survey for Non-Indigenous Marine Species (Research Project ZBS2000-04)
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Invertebrate Responses to Large-Scale Change: Impacts of Eutrophication and Cataclysmic Earthquake Events in a Southern New Zealand Estuary
Invertebrate Responses to Large-Scale Change: Impacts of Eutrophication and Cataclysmic Earthquake Events in a Southern New Zealand Estuary A thesis submitted in partial fulfilment of the requirements for the degree of Doctorate of Philosophy in Ecology at the University of Canterbury, New Zealand Jennifer Erin Skilton 2013 Abstract Abstract Environmental stress and disturbance can affect the structure and functioning of marine ecosystems by altering their physical, chemical and biological features. In estuaries, benthic invertebrate communities play important roles in structuring sediments, influencing primary production and biogeochemical flux, and occupying key food web positions. Stress and disturbance can reduce species diversity, richness and abundance, with ecological theory predicting that biodiversity will be at its lowest soon after a disturbance with assemblages dominated by opportunistic species. The Avon-Heathcote Estuary in Christchurch New Zealand has provided a novel opportunity to examine the effects of stress, in the form of eutrophication, and disturbance, in the form of cataclysmic earthquake events, on the structure and functioning of an estuarine ecosystem. For more than 50 years, large quantities (up to 500,000m3/day) of treated wastewater were released into this estuary but in March 2010 this was diverted to an ocean outfall, thereby reducing the nutrient loading by around 90% to the estuary. This study was therefore initially focussed on the reversal of eutrophication and consequent effects on food web structure in the estuary as it responded to lower nutrients. In 2011, however, Christchurch was struck with a series of large earthquakes that greatly changed the estuary. Massive amounts of liquefied sediments, covering up to 65% of the estuary floor, were forced up from deep below the estuary, the estuary was tilted by up to a 50cm rise on one side and a corresponding drop on the other, and large quantities of raw sewage from broken wastewater infrastructure entered the estuary for up to nine months. -
An Annotated Checklist of the Marine Macroinvertebrates of Alaska David T
NOAA Professional Paper NMFS 19 An annotated checklist of the marine macroinvertebrates of Alaska David T. Drumm • Katherine P. Maslenikov Robert Van Syoc • James W. Orr • Robert R. Lauth Duane E. Stevenson • Theodore W. Pietsch November 2016 U.S. Department of Commerce NOAA Professional Penny Pritzker Secretary of Commerce National Oceanic Papers NMFS and Atmospheric Administration Kathryn D. Sullivan Scientific Editor* Administrator Richard Langton National Marine National Marine Fisheries Service Fisheries Service Northeast Fisheries Science Center Maine Field Station Eileen Sobeck 17 Godfrey Drive, Suite 1 Assistant Administrator Orono, Maine 04473 for Fisheries Associate Editor Kathryn Dennis National Marine Fisheries Service Office of Science and Technology Economics and Social Analysis Division 1845 Wasp Blvd., Bldg. 178 Honolulu, Hawaii 96818 Managing Editor Shelley Arenas National Marine Fisheries Service Scientific Publications Office 7600 Sand Point Way NE Seattle, Washington 98115 Editorial Committee Ann C. Matarese National Marine Fisheries Service James W. Orr National Marine Fisheries Service The NOAA Professional Paper NMFS (ISSN 1931-4590) series is pub- lished by the Scientific Publications Of- *Bruce Mundy (PIFSC) was Scientific Editor during the fice, National Marine Fisheries Service, scientific editing and preparation of this report. NOAA, 7600 Sand Point Way NE, Seattle, WA 98115. The Secretary of Commerce has The NOAA Professional Paper NMFS series carries peer-reviewed, lengthy original determined that the publication of research reports, taxonomic keys, species synopses, flora and fauna studies, and data- this series is necessary in the transac- intensive reports on investigations in fishery science, engineering, and economics. tion of the public business required by law of this Department. -
UC Santa Barbara Dissertation Template
UNIVERSITY OF CALIFORNIA Santa Barbara Social organization in trematode parasitic flatworms A dissertation submitted in partial satisfaction of the requirements for the degree Doctor of Philosophy in Ecology, Evolution and Marine Biology by Ana Elisa Garcia Vedrenne Committee in charge: Professor Armand M. Kuris, Chair Professor Kathleen R. Foltz Professor Ryan F. Hechinger Professor Todd H. Oakley March 2018 The dissertation of Ana Elisa Garcia Vedrenne is approved. _____________________________________ Ryan F. Hechinger _____________________________________ Kathleen R. Foltz _____________________________________ Todd H. Oakley _____________________________________ Armand M. Kuris, Committee Chair March 2018 ii Social organization in trematode parasitic flatworms Copyright © 2018 by Ana Elisa Garcia Vedrenne iii Acknowledgements As I wrap up my PhD and reflect on all the people that have been involved in this process, I am happy to see that the list goes on and on. I hope I’ve expressed my gratitude adequately along the way– I find it easier to express these feeling with a big hug than with awkward words. Nonetheless, the time has come to put these acknowledgements in writing. Gracias, gracias, gracias! I would first like to thank everyone on my committee. I’ve been lucky to have a committee that gave me freedom to roam free while always being there to help when I got stuck. Armand Kuris, thank you for being the advisor that says yes to adventures, for always having your door open, and for encouraging me to speak my mind. Thanks for letting Gaby and me join your lab years ago and inviting us back as PhD students. Kathy Foltz, it is impossible to think of a better role model: caring, patient, generous and incredibly smart. -
Parasite Effects on Growth of the Mud Whelk, Cominella
PARASITE EFFECTS ON GROWTH OF THE MUD WHELK, COMINELLA GLANDIFORMIS (REEVE,. 1874). A thesis submitted in partial fulfilment of the requirements for the degree of Master of Science in Zoology. By Brett ~.esney t;"''' University of Canterbury, 1989. Some specimens of the mud whelk, Cominella glandiformis, pictured with the principal means of dissection. TABLE OF CONTENTS. Abstract Page 1 General Introduction Page 2 Chapter 1 - A field study of Comine77a g7andiformis and its parasite fauna from the Avon-Heathcote estuary, with emphasis on the relationship between host size and parasite prevalence Page 12 Chapter 2 - General histology, and anthelmintic elimination of parasite infection in Comine77a g7andiformis Page 29 Chapter 3 - A brief description of Urosporidium sp., hyperparasite of a trematode from Comine77a g7 andiformi s Page 50 Chapter 4 - A comparison of laboratory growth rates for infected and non-infected Comine77a g7andiformis Page 59 General Discussion and Conclusion Page 72 Acknowledgements Page 81 References Page 82 Appendix - Scatterplots and correlation statistics for Comine77a g7andiformi.s collected from the field Page 88 1. ABSTRACT. The mud whelk, Comine77a glandiformis, from the Avon-Heathcote estuary in Christchurch, is infected by three species of larval digenean parasite. The prevalence of infection in C. g7andiformis was found to increase with snail length for each parasite species. This introduced the possibility that gigantism could be occurring, and investigation of this formed the study basis. Differences were apparent between sexes of snail, and juvenile and adult individuals, with respect to both infection and position on the shore. For the analyses used, a combination of length and shell weight was found to be the most effective measure of snail size, but wet and dry tissue weights could also be used. -
Equal Partnership: Two Trematode Species, Not One, Manipulate the Burrowing Behaviour of the New Zealand Cockle, Austrovenus Stutchburyi
Journal of Helminthology (2004) 78, 195–199 DOI: 10.1079/JOH2003231 Equal partnership: two trematode species, not one, manipulate the burrowing behaviour of the New Zealand cockle, Austrovenus stutchburyi C. Babirat, K.N. Mouritsen and R. Poulin* Department of Zoology, University of Otago, PO Box 56, Dunedin, New Zealand Abstract Metacercariae of the trematode Curtuteria australis (Echinostomatidae) accumulate in the foot of the New Zealand cockle Austrovenus stutchburyi, severely impairing the cockle’s ability to burrow under the sediments. This results in increased predation by birds on cockles, and thus enhanced transmission rates of the parasite to its bird definitive hosts. This host manipulation by the trematode is costly: fish regularly crop the tip of the foot of cockles stranded on the sediment surface, killing any metacercariae they ingest. A second, previously undetected trematode species (characterized by 23 collar spines) co-existing with C. australis, has been found in the foot of cockles in the Otago Harbour, South Island, New Zealand. The relative abundance of the two species varies among localities, with the identity of the numerically dominant species also changing from one locality to the next. Both C. australis and the new species have a strong preference for encysting in the tip of the cockle’s foot, where their impact on the burrowing ability of the host is greatest, and where they both face the risk of cropping by fish. Results indicate that these two species are ecological equivalents, and their combined numbers determine -
Prerequisites for Flying Snails: External Transport Potential of Aquatic Snails by Waterbirds Author(S): C
Prerequisites for flying snails: external transport potential of aquatic snails by waterbirds Author(s): C. H. A. van Leeuwen and G. van der Velde Source: Freshwater Science, 31(3):963-972. 2012. Published By: The Society for Freshwater Science URL: http://www.bioone.org/doi/full/10.1899/12-023.1 BioOne (www.bioone.org) is a nonprofit, online aggregation of core research in the biological, ecological, and environmental sciences. BioOne provides a sustainable online platform for over 170 journals and books published by nonprofit societies, associations, museums, institutions, and presses. Your use of this PDF, the BioOne Web site, and all posted and associated content indicates your acceptance of BioOne’s Terms of Use, available at www.bioone.org/page/terms_of_use. Usage of BioOne content is strictly limited to personal, educational, and non-commercial use. Commercial inquiries or rights and permissions requests should be directed to the individual publisher as copyright holder. BioOne sees sustainable scholarly publishing as an inherently collaborative enterprise connecting authors, nonprofit publishers, academic institutions, research libraries, and research funders in the common goal of maximizing access to critical research. Freshwater Science, 2012, 31(3):963–972 ’ 2012 by The Society for Freshwater Science DOI: 10.1899/12-023.1 Published online: 17 July 2012 Prerequisites for flying snails: external transport potential of aquatic snails by waterbirds 1,2,3,5 2,4,6 C. H. A. van Leeuwen AND G. van der Velde 1 Department of Aquatic -
Benthic Flora and Fauna of the Patea Shoals Region, South Taranaki Bight
Benthic flora and fauna of the Patea Shoals region, South Taranaki Bight Prepared for Trans-Tasman Resources Ltd October 2013 (Updated November 2015) Authors/Contributors: J. Beaumont, T.J. Anderson, A.B. MacDiarmid For any information regarding this report please contact: Tara J. Anderson NIWA Nelson +64-3-545 7746 National Institute of Water & Atmospheric Research Ltd 301 Evans Bay Parade, Greta Point Wellington 6021 Private Bag 14901, Kilbirnie Wellington 6241 New Zealand Phone +64-4-386 0300 Fax +64-4-386 0574 NIWA Client Report No: WLG2012-55 Report date: October 2013 NIWA Project: TTR11301 © All rights reserved. This publication may not be reproduced or copied in any form without the permission of the copyright owner(s). Such permission is only to be given in accordance with the terms of the client’s contract with NIWA. This copyright extends to all forms of copying and any storage of material in any kind of information retrieval system. Whilst NIWA has used all reasonable endeavours to ensure that the information contained in this document is accurate, NIWA does not give any express or implied warranty as to the completeness of the information contained herein, or that it will be suitable for any purpose(s) other than those specifically contemplated during the Project or agreed by NIWA and the Client. 30 November 2015 12.33 p.m. Contents Executive summary ............................................................................................................. 9 1 Introduction ............................................................................................................ 12 1.1 Background ............................................................................................................. 12 1.1.1 Iron ore and seabed extraction ............................................................... 12 1.2 Previous research on the benthic fauna of the South Taranaki Bight .................... 13 1.3 NIWA’s brief ........................................................................................................... -
Sepkoski, J.J. 1992. Compendium of Fossil Marine Animal Families
MILWAUKEE PUBLIC MUSEUM Contributions . In BIOLOGY and GEOLOGY Number 83 March 1,1992 A Compendium of Fossil Marine Animal Families 2nd edition J. John Sepkoski, Jr. MILWAUKEE PUBLIC MUSEUM Contributions . In BIOLOGY and GEOLOGY Number 83 March 1,1992 A Compendium of Fossil Marine Animal Families 2nd edition J. John Sepkoski, Jr. Department of the Geophysical Sciences University of Chicago Chicago, Illinois 60637 Milwaukee Public Museum Contributions in Biology and Geology Rodney Watkins, Editor (Reviewer for this paper was P.M. Sheehan) This publication is priced at $25.00 and may be obtained by writing to the Museum Gift Shop, Milwaukee Public Museum, 800 West Wells Street, Milwaukee, WI 53233. Orders must also include $3.00 for shipping and handling ($4.00 for foreign destinations) and must be accompanied by money order or check drawn on U.S. bank. Money orders or checks should be made payable to the Milwaukee Public Museum. Wisconsin residents please add 5% sales tax. In addition, a diskette in ASCII format (DOS) containing the data in this publication is priced at $25.00. Diskettes should be ordered from the Geology Section, Milwaukee Public Museum, 800 West Wells Street, Milwaukee, WI 53233. Specify 3Y. inch or 5Y. inch diskette size when ordering. Checks or money orders for diskettes should be made payable to "GeologySection, Milwaukee Public Museum," and fees for shipping and handling included as stated above. Profits support the research effort of the GeologySection. ISBN 0-89326-168-8 ©1992Milwaukee Public Museum Sponsored by Milwaukee County Contents Abstract ....... 1 Introduction.. ... 2 Stratigraphic codes. 8 The Compendium 14 Actinopoda. -
Appendix S3: TMO References
Appendix S3: TMO References Abbott, M. B. (1973). Seasonal diversity and density in bryozoan populations of Block Island Sound (New York, U.S.A.). In G. P. Larwood (Ed.), Living and Fossil Bryozoa (pp. 37–51). London: Academic Press. Abdelsalam, K. M. (2014). Benthic bryozoan fauna from the northern Egyptian coast. Egyptian Journal of Aquatic Research, 40, 269–282. Abdelsalam, K. M. (2016a). Fouling bryozoan fauna from Hurghada, Red Sea, Egypt. I. Erect species. International Journal of Environmental Science and Engineering, 7, 59–70. Abdelsalam, K. M. (2016b). Fouling bryozoan fauna from Hurghada, Red Sea, Egypt. II. Encrusting species. Egyptian Journal of Aquatic Research, 42, 427–436. Abdelsalam, K. M., & Ramadan, S. E. (2008a). Fouling Bryozoa from some Alexandria harbours, Egypt. (I) Erect species. Mediterranean Marine Science, 9(1), 31–47. Abdelsalam, K. M., & Ramadan, S. E. (2008b). Fouling Bryozoa from some Alexandria harbours, Egypt. (II) Encrusting species. Mediterranean Marine Science, 9(2), 5–20. Abdelsalam, K. M., Taylor, P. D., & Dorgham, M. M. (2017). A new species of Calyp- totheca (Bryozoa: Cheilostomata) from Alexandria, Egypt, southeastern Mediterranean. Zootaxa, 4276(4), 582–590. Alder, J. (1864). Descriptions of new British Polyzoa, with remarks on some imperfectly known species. Quarterly Journal of Microscopical Science, 4, 95–109. Almeida, A. C. S., Alves, O., Peso-Aguiar, M., Dominguez, J., & Souza, F. (2015). Gym- nolaemata bryozoans of Bahia State, Brazil. Marine Biodiversity Records, 8. Almeida, A. C., & Souza, F. B. (2014). Two new species of cheilostome bryozoans from the South Atlantic Ocean. Zootaxa, 3753(3), 283–290. Almeida, A. C., Souza, F. B., & Vieira, L. -
Genetic Structure and Shell Shape Variation Within a Rocky Shore Whelk Suggest Both Diverging and Constraining Selection with Gene Flow
Biological Journal of the Linnean Society, 2018, XX, 1–17. With 4 figures. Downloaded from https://academic.oup.com/biolinnean/advance-article-abstract/doi/10.1093/biolinnean/bly142/5139735 by Massey University user on 25 October 2018 Genetic structure and shell shape variation within a rocky shore whelk suggest both diverging and constraining selection with gene flow MICHAEL R. GEMMELL1, STEVEN A. TREWICK1, JAMES S. CRAMPTON2,3, FELIX VAUX1, SIMON F. K. HILLS1, ELIZABETH E. DALY1, BRUCE A. MARSHALL4, ALAN G. BEU2, and MARY MORGAN-RICHARDS1*, 1Ecology Group, College of Sciences, Massey University, Palmerston North, New Zealand 2GNS Science, PO Box 30-368, Lower Hutt, New Zealand 3School of Geography, Environment & Earth Sciences, Victoria University, Victoria University of Wellington, PO Box 600, Wellington, New Zealand 4Museum of New Zealand Te Papa Tongarewa, Wellington, New Zealand Received 26 June 2018; revised 26 August 2018; accepted for publication 27 August 2018 Variation in snail shell shape has provided evolutionary biologists with excellent material for the study of local adaptation to local environments. However, the assumption that shell shape variation is evidence of distinct lineages (species) might have led to taxonomic inflation within some gastropod lineages. Here, we compare shell shape variation and genetic structure of two independent lineages of New Zealand rocky shore whelks in order to understand the process that leads to an unusual disjunct distribution. We examined the Buccinulum vittatum complex (three subspecies plus Buccinulum colensoi) using mitochondrial DNA sequences, 849 single nucleotide polymorphisms and geometric morphometric data on shell shape. Specimens within the range of B. colensoi shared nuclear markers and mitochondrial DNA haplotypes with the southern subspecies Buccinulum vittatum littorinoides, whereas the northern samples (Buccinulum vittatum vittatum) had distinct genotypes. -
Genome Statistics and Phylogenetic Reconstructions for Southern Hemisphere Whelks (Gastropoda: Buccinulidae)
Data in Brief 16 (2018) 172–181 Contents lists available at ScienceDirect Data in Brief journal homepage: www.elsevier.com/locate/dib Data Article Genome statistics and phylogenetic reconstructions for Southern Hemisphere whelks (Gastropoda: Buccinulidae) Felix Vaux a,n,1, Simon F.K. Hills a, Bruce A. Marshall b, Steve A. Trewick a, Mary Morgan-Richards a a Ecology Group, Institute of Agriculture and Environment, Massey University, Palmerston North, New Zealand b Museum of New Zealand Te Papa Tongarewa, Wellington, New Zealand article info abstract Article history: This data article provides genome statistics, phylogenetic networks Received 29 June 2017 and trees for a phylogenetic study of Southern Hemisphere Buc- Received in revised form cinulidae marine snails [1]. We present alternative phylogenetic 1 November 2017 reconstructions using mitochondrial genomic and 45S nuclear Accepted 3 November 2017 ribosomal cassette DNA sequence data, as well as trees based on Available online 7 November 2017 short-length DNA sequence data. We also investigate the propor- tion of variable sites per sequence length for a set of mitochondrial and nuclear ribosomal genes, in order to examine the phylogenetic information provided by different DNA markers. Sequence align- ment files used for phylogenetic reconstructions in the main text and this article are provided here. & 2017 The Authors. Published by Elsevier Inc. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). DOI of original article: https://doi.org/10.1016/j.ympev.2017.06.018 ⁎ Corresponding author. E-mail address: [email protected] (F. Vaux). 1 Ecology Group, Institute of Agriculture and Environment, Massey University, Palmerston North, New Zealand. -
Dispersal Ability, Habitat Characteristics, and Sea-Surface
Baptista et al. BMC Ecol Evo (2021) 21:128 BMC Ecology and Evolution https://doi.org/10.1186/s12862-021-01862-1 RESEARCH Open Access Dispersal ability, habitat characteristics, and sea-surface circulation shape population structure of Cingula trifasciata (Gastropoda: Rissoidae) in the remote Azores Archipelago L. Baptista1,2,3,4*, H. Meimberg1, S. P. Ávila2,3,4,5, A. M. Santos4,6 and M. Curto1,7 Abstract Background: In the marine realm, dispersal ability is among the major factors shaping the distribution of species. In the Northeast Atlantic Ocean, the Azores Archipelago is home to a multitude of marine invertebrates which, despite their dispersal limitations, maintain gene fow among distant populations, with complex evolutionary and biogeo- graphic implications. The mechanisms and factors underlying the population dynamics and genetic structure of non- planktotrophic gastropods within the Azores Archipelago and related mainland populations are still poorly under- stood. The rissoid Cingula trifasciata is herewith studied to clarify its population structure in the Northeast Atlantic Ocean and factors shaping it, with a special focus in intra-archipelagic dynamics. Results: Coupling microsatellite genotyping by amplicon sequencing (SSR-GBAS) and mitochondrial datasets, our results suggest the diferentiation between insular and continental populations of Cingula trifasciata, supporting previously raised classifcation issues and detecting potential cryptic diversity. The fnding of connectivity between widely separated populations was startling. In unique ways, dispersal ability, habitat type, and small-scale oceano- graphic currents appear to be the key drivers of C. trifasciata’s population structure in the remote Azores Archipelago. Dispersal as non-planktotrophic larvae is unlikely, but its small-size adults easily engage in rafting.