The Bull-Kelp Durvillaea Antarctica (Chamisso) Hariot
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New Zealand's Genetic Diversity
1.13 NEW ZEALAND’S GENETIC DIVERSITY NEW ZEALAND’S GENETIC DIVERSITY Dennis P. Gordon National Institute of Water and Atmospheric Research, Private Bag 14901, Kilbirnie, Wellington 6022, New Zealand ABSTRACT: The known genetic diversity represented by the New Zealand biota is reviewed and summarised, largely based on a recently published New Zealand inventory of biodiversity. All kingdoms and eukaryote phyla are covered, updated to refl ect the latest phylogenetic view of Eukaryota. The total known biota comprises a nominal 57 406 species (c. 48 640 described). Subtraction of the 4889 naturalised-alien species gives a biota of 52 517 native species. A minimum (the status of a number of the unnamed species is uncertain) of 27 380 (52%) of these species are endemic (cf. 26% for Fungi, 38% for all marine species, 46% for marine Animalia, 68% for all Animalia, 78% for vascular plants and 91% for terrestrial Animalia). In passing, examples are given both of the roles of the major taxa in providing ecosystem services and of the use of genetic resources in the New Zealand economy. Key words: Animalia, Chromista, freshwater, Fungi, genetic diversity, marine, New Zealand, Prokaryota, Protozoa, terrestrial. INTRODUCTION Article 10b of the CBD calls for signatories to ‘Adopt The original brief for this chapter was to review New Zealand’s measures relating to the use of biological resources [i.e. genetic genetic resources. The OECD defi nition of genetic resources resources] to avoid or minimize adverse impacts on biological is ‘genetic material of plants, animals or micro-organisms of diversity [e.g. genetic diversity]’ (my parentheses). -
Akatore Study Published in Earth and Planetary
Earth and Planetary Science Letters 520 (2019) 18–25 Contents lists available at ScienceDirect Earth and Planetary Science Letters www.elsevier.com/locate/epsl Kelp DNA records late Holocene paleoseismic uplift of coastline, southeastern New Zealand ∗ Elahe Parvizi a, Dave Craw b, , Jonathan M. Waters a a Zoology Department, University of Otago, PO Box 56, Dunedin 9054, New Zealand b Geology Department, University of Otago, PO Box 56, Dunedin 9054, New Zealand a r t i c l e i n f o a b s t r a c t Article history: Holocene paleoseismic activity on the Akatore Fault zone, southeastern New Zealand, has caused uplift Received 20 January 2019 of a 23 km section of coastline by several metres. Prominent relict shoreline terraces are preserved at Received in revised form 4 May 2019 6 m and 3 m above the present sea level, and the latter terrace was formed 1000-1400 yrs BP. The Accepted 22 May 2019 main fault strand farther inland has 6 mof late Holocene vertical offset, but the relationships between Available online xxxx coastal offsets and fault offsets are not understood. There is no preserved geological evidence on the Editor: J.-P. Avouac coastline to distinguish between incremental uplift (e.g., numerous centimetre-scale events) and major, Keywords: metre-scale, uplift events: a distinction that is important for evaluating regional paleoseismicity. We have paleoseismology used genetic characterisation of populations of live kelp, Durvillaea antarctica growing along the shoreline neotectonics to investigate whether or not there has been a catastrophic uplift event, greater than the two metre tidal fault range, that was sufficient to extirpate intertidal kelp populations. -
Rare Phytomyxid Infection on the Alien Seagrass Halophila Stipulacea In
Research Article Mediterranean Marine Science Indexed in WoS (Web of Science, ISI Thomson) and SCOPUS The journal is available on line at http://www.medit-mar-sc.net DOI: http://dx.doi.org/10.12681/mms.14053 Rare phytomyxid infection on the alien seagrass Halophila stipulacea in the southeast Aegean Sea MARTIN VOHNÍK1,2, ONDŘEJ BOROVEC1,2, ELIF ÖZGÜR ÖZBEK3 and EMINE ŞÜKRAN OKUDAN ASLAN4 1 Department of Mycorrhizal Symbioses, Institute of Botany, Czech Academy of Sciences, Průhonice, 25243 Czech Republic 2 Department of Plant Experimental Biology, Faculty of Science, Charles University, Prague, 12844 Czech Republic 3 Marine Biology Museum, Antalya Metropolitan Municipality, Antalya, Turkey 4 Department of Marine Biology, Faculty of Fisheries, Akdeniz University, Antalya, Turkey Corresponding author: [email protected] Handling Editor: Athanasios Athanasiadis Received: 31 May 2017; Accepted: 9 October 2017; Published on line: 8 December 2017 Abstract Phytomyxids (Phytomyxea) are obligate endosymbionts of many organisms such as algae, diatoms, oomycetes and higher plants including seagrasses. Despite their supposed significant roles in the marine ecosystem, our knowledge of their marine diversity and distribution as well as their life cycles is rather limited. Here we describe the anatomy and morphology of several developmental stages of a phytomyxid symbiosis recently discovered on the petioles of the alien seagrass Halophila stipulacea at a locality in the southeast Aegean Sea. Its earliest stage appeared as whitish spots already on the youngest leaves at the apex of the newly formed rhizomes. The infected host cells grew in volume being filled with plasmodia which resulted in the formation of characteristic macroscopic galls. -
Protist Phylogeny and the High-Level Classification of Protozoa
Europ. J. Protistol. 39, 338–348 (2003) © Urban & Fischer Verlag http://www.urbanfischer.de/journals/ejp Protist phylogeny and the high-level classification of Protozoa Thomas Cavalier-Smith Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK; E-mail: [email protected] Received 1 September 2003; 29 September 2003. Accepted: 29 September 2003 Protist large-scale phylogeny is briefly reviewed and a revised higher classification of the kingdom Pro- tozoa into 11 phyla presented. Complementary gene fusions reveal a fundamental bifurcation among eu- karyotes between two major clades: the ancestrally uniciliate (often unicentriolar) unikonts and the an- cestrally biciliate bikonts, which undergo ciliary transformation by converting a younger anterior cilium into a dissimilar older posterior cilium. Unikonts comprise the ancestrally unikont protozoan phylum Amoebozoa and the opisthokonts (kingdom Animalia, phylum Choanozoa, their sisters or ancestors; and kingdom Fungi). They share a derived triple-gene fusion, absent from bikonts. Bikonts contrastingly share a derived gene fusion between dihydrofolate reductase and thymidylate synthase and include plants and all other protists, comprising the protozoan infrakingdoms Rhizaria [phyla Cercozoa and Re- taria (Radiozoa, Foraminifera)] and Excavata (phyla Loukozoa, Metamonada, Euglenozoa, Percolozoa), plus the kingdom Plantae [Viridaeplantae, Rhodophyta (sisters); Glaucophyta], the chromalveolate clade, and the protozoan phylum Apusozoa (Thecomonadea, Diphylleida). Chromalveolates comprise kingdom Chromista (Cryptista, Heterokonta, Haptophyta) and the protozoan infrakingdom Alveolata [phyla Cilio- phora and Miozoa (= Protalveolata, Dinozoa, Apicomplexa)], which diverged from a common ancestor that enslaved a red alga and evolved novel plastid protein-targeting machinery via the host rough ER and the enslaved algal plasma membrane (periplastid membrane). -
A Comprehensive Kelp Phylogeny Sheds Light on the Evolution of an T Ecosystem ⁎ Samuel Starkoa,B,C, , Marybel Soto Gomeza, Hayley Darbya, Kyle W
Molecular Phylogenetics and Evolution 136 (2019) 138–150 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A comprehensive kelp phylogeny sheds light on the evolution of an T ecosystem ⁎ Samuel Starkoa,b,c, , Marybel Soto Gomeza, Hayley Darbya, Kyle W. Demesd, Hiroshi Kawaie, Norishige Yotsukuraf, Sandra C. Lindstroma, Patrick J. Keelinga,d, Sean W. Grahama, Patrick T. Martonea,b,c a Department of Botany & Biodiversity Research Centre, The University of British Columbia, 6270 University Blvd., Vancouver V6T 1Z4, Canada b Bamfield Marine Sciences Centre, 100 Pachena Rd., Bamfield V0R 1B0, Canada c Hakai Institute, Heriot Bay, Quadra Island, Canada d Department of Zoology, The University of British Columbia, 6270 University Blvd., Vancouver V6T 1Z4, Canada e Department of Biology, Kobe University, Rokkodaicho 657-8501, Japan f Field Science Center for Northern Biosphere, Hokkaido University, Sapporo 060-0809, Japan ARTICLE INFO ABSTRACT Keywords: Reconstructing phylogenetic topologies and divergence times is essential for inferring the timing of radiations, Adaptive radiation the appearance of adaptations, and the historical biogeography of key lineages. In temperate marine ecosystems, Speciation kelps (Laminariales) drive productivity and form essential habitat but an incomplete understanding of their Kelp phylogeny has limited our ability to infer their evolutionary origins and the spatial and temporal patterns of their Laminariales diversification. Here, we -
The Halogenated Metabolism of Brown Algae
The Halogenated Metabolism of Brown Algae (Phaeophyta), Its Biological Importance and Its Environmental Significance Stéphane La Barre, Philippe Potin, Catherine Leblanc, Ludovic Delage To cite this version: Stéphane La Barre, Philippe Potin, Catherine Leblanc, Ludovic Delage. The Halogenated Metabolism of Brown Algae (Phaeophyta), Its Biological Importance and Its Environmental Significance. Marine drugs, MDPI, 2010, 8, pp.988. hal-00987044 HAL Id: hal-00987044 https://hal.archives-ouvertes.fr/hal-00987044 Submitted on 5 May 2014 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Mar. Drugs 2010, 8, 988-1010; doi:10.3390/md8040988 OPEN ACCESS Marine Drugs ISSN 1660-3397 www.mdpi.com/journal/marinedrugs Review The Halogenated Metabolism of Brown Algae (Phaeophyta), Its Biological Importance and Its Environmental Significance Stéphane La Barre 1,2,*, Philippe Potin 1,2, Catherine Leblanc 1,2 and Ludovic Delage 1,2 1 Université Pierre et Marie Curie-Paris 6, UMR 7139 Végétaux marins et Biomolécules, Station Biologique F-29682, Roscoff, France; E-Mails: [email protected] (P.P.); [email protected] (C.L.); [email protected] (L.D.) 2 CNRS, UMR 7139 Végétaux marins et Biomolécules, Station Biologique F-29682, Roscoff, France * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +33-298-292-361; Fax: +33-298-292-385. -
Plasmodiophora Brassicae
Bi et al. Phytopathology Research (2019) 1:12 https://doi.org/10.1186/s42483-019-0018-6 Phytopathology Research RESEARCH Open Access Comparative genomics reveals the unique evolutionary status of Plasmodiophora brassicae and the essential role of GPCR signaling pathways Kai Bi1,2, Tao Chen2, Zhangchao He1,2, Zhixiao Gao1,2, Ying Zhao1,2, Huiquan Liu3, Yanping Fu2, Jiatao Xie1,2, Jiasen Cheng1,2 and Daohong Jiang1,2* Abstract Plasmodiophora brassicae is an important biotrophic eukaryotic plant pathogen and a member of the rhizarian protists. This biotrophic pathogen causes clubroot in cruciferous plants via novel intracellular mechanisms that are markedly different from those of other biotrophic organisms. To date, genomes from six single spore isolates of P. brassicae have been sequenced. An accurate description of the evolutionary status of this biotrophic protist, however, remains lacking. Here, we determined the draft genome of the P. brassicae ZJ-1 strain. A total of 10,951 protein-coding genes were identified from a 24.1 Mb genome sequence. We applied a comparative genomics approach to prove the Rhizaria supergroup is an independent branch in the eukaryotic evolutionary tree. We also found that the GPCR signaling pathway, the versatile signal transduction to multiple intracellular signaling cascades in response to extracellular signals in eukaryotes, is significantly enriched in P. brassicae-expanded and P. brassicae-specific gene sets. Additionally, treatment with a GPCR inhibitor relieved the symptoms of clubroot and significantly suppressed the development of plasmodia. Our findings suggest that GPCR signal transduction pathways play important roles in the growth, development, and pathogenicity of P. brassicae. -
Division: Ochrophyta- 16,999 Species Order Laminariales: Class: Phaeophyceae – 2,060 Species 1
4/28/2015 Division: Ochrophyta- 16,999 species Order Laminariales: Class: Phaeophyceae – 2,060 species 1. Life History and Reproduction Order: 6. Laminariales- 148 species - Saxicolous - Sporangia always unilocular 2. Macrothallus Construction: - Most have sieve cells/elements - Pheromone released by female gametes lamoxirene Genus: Macrocystis 3. Growth Nereocystis Pterogophora Egregia Postelsia Alaria 2 14 Microscopic gametophytes Life History of Laminariales Diplohaplontic Alternation of Generations: organism having a separate multicellular diploid sporophyte and haploid gametophyte stage 3 4 1 4/28/2015 General Morphology: All baby kelps look alike 6 Intercalary growth Meristodermal growth Meristoderm/outer cortex – outermost cells (similar to cambia in land plants) Inner cortex – unpigmented cells Medulla – contains specialized cells (sieve elements/hyphae) Meristodermal growth gives thallus girth (mostly) “transition zone” Periclinal vs. Anticlinal cell division: • Periclinal = cell division parallel to the plane of the meristoderm girth •Anticlinal = cell division • Growth in both directions away from meristem • Usually between stipe and blade (or blade and pneumatocyst) perpendicular to the plane of the 7 meristoderm height 8 2 4/28/2015 Phaeophyceae Morphology of intercellular connections Anticlinal Pattern of cell division perpendicular to surface of algae. Only alga to transport sugar/photosynthate in sieve elements Periclinal Cell division parallel to surface of plant. Plasmodesmata = connections between adjacent cells, -
Gas Composition of Developing Pneumatocysts in Bull Kelp Nereocystis Luetkeana (Phaeophyceae)1
J. Phycol. 56, 1367–1372 (2020) © 2020 Phycological Society of America DOI: 10.1111/jpy.13037-19-219 NOTE GAS COMPOSITION OF DEVELOPING PNEUMATOCYSTS IN BULL KELP NEREOCYSTIS LUETKEANA (PHAEOPHYCEAE)1 Lauran M. Liggan ,2 and Patrick T. Martone Department of Botany and Biodiversity Research Centre, University of British Columbia, 3529-6270 University Blvd, Vancouver, BC V6T 1Z4, Canada The subtidal kelp Nereocystis luetkeana (hereafter The bull kelp Nereocystis luetkeana (hereafter Nereo- Nereocystis) maintains an upright stature by producing a cystis) builds unique subtidal forests in the Northeast single gas-filled float (pneumatocyst) that provides Pacific by having a singular gas-filled float called a buoyancy. The ability of Nereocystis pneumatocysts to pneumatocyst, which enables the kelp’s flexible thal- inflate with gas underwater is peculiar, and the gas lus to remain upright and vertical in the water col- composition of pneumatocysts has been the topic of umn (Arzee et al. 1985). The ability of this seaweed several studies over the last 100 years. Past studies of to create an air-tight reservoir and inflate underwa- pneumatocyst gases only examined large sporophytes, ter is remarkable, and the gas composition of Nereo- leaving open questions about the origins of these gases cystis pneumatocysts has been the topic of several and how gas composition may change during studies during the first half of the 20th century (Frye development. In this study, we use developmental time et al. 1915, Langdon 1917, Langdon and Gailey as a means to understand the origin and physiological 1920, Rigg and Henry 1935, Rigg and Swain 1941). mechanisms that give rise to different gases within Past studies found that 20–25% of gas sampled from ~ Nereocystis pneumatocysts. -
Keynote and Oral Papers1. Algal Diversity and Species Delimitation
European Journal of Phycology ISSN: 0967-0262 (Print) 1469-4433 (Online) Journal homepage: http://www.tandfonline.com/loi/tejp20 Keynote and Oral Papers To cite this article: (2015) Keynote and Oral Papers, European Journal of Phycology, 50:sup1, 22-120, DOI: 10.1080/09670262.2015.1069489 To link to this article: http://dx.doi.org/10.1080/09670262.2015.1069489 Published online: 20 Aug 2015. Submit your article to this journal Article views: 76 View related articles View Crossmark data Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=tejp20 Download by: [University of Kiel] Date: 22 September 2015, At: 02:13 Keynote and Oral Papers 1. Algal diversity and species delimitation: new tools, new insights 1KN.1 1KN.2 HOW COMPLEMENTARY BARCODING AND GENERATING THE DIVERSITY - POPULATION GENETICS ANALYSES CAN UNCOVERING THE SPECIATION HELP SOLVE TAXONOMIC QUESTIONS AT MECHANISMS IN FRESHWATER AND SHORT PHYLOGENETIC DISTANCES: THE TERRESTRIAL MICROALGAE EXAMPLE OF THE BROWN ALGA Š PYLAIELLA LITTORALIS Pavel kaloud ([email protected]) Christophe Destombe1 ([email protected]), Department of Botany, Charles Univrsity in Prague, Alexandre Geoffroy1 ([email protected]), Prague 12801, Czech Republic Line Le Gall2 ([email protected]), Stéphane Mauger3 ([email protected]) and Myriam Valero4 Species are one of the fundamental units of biology, ([email protected]) comparable to genes or cells. Understanding the general patterns and processes of speciation can facilitate the 1Station Biologique de Roscoff, Sorbonne Universités, formulation and testing of hypotheses in the most impor- Université Pierre et Marie Curie, CNRS, Roscoff tant questions facing biology today, including the fitof 29688, France; 2Institut de Systématique, Evolution, organisms to their environment and the dynamics and Biodiversité, UMR 7205 CNRS-EPHE-MNHN-UPMC, patterns of organismal diversity. -
The Ecology of Chemical Defence in a Filamentous
THE ECOLOGY OF CHEMICAL DEFENCE IN A FILAMENTOUS MARINE RED ALGA NICHOLAS A. PAUL A thesis submitted to the University of New South Wales for the degree of Doctor of Philosophy July 2006 i ACKNOWLEDGEMENTS··························································································································· iii CHAPTER 1. GENERAL INTRODUCTION ..........................................................................1 NATURAL PRODUCTS CHEMISTRY OF MACROALGAE ...............................................................2 THE RED ALGAE ........................................................................................................................2 ECOLOGICAL ROLES OF SECONDARY METABOLITES ................................................................3 i) Chemical mediation of interactions with herbivores ........................................................3 ii) Chemical mediation of interactions with fouling organisms ............................................4 ULTRASTRUCTURE OF SPECIALISED CELLS AND STRUCTURES.................................................5 RESOURCE ALLOCATION TO SECONDARY METABOLITE PRODUCTION.....................................6 THESIS AIMS ..............................................................................................................................7 CHAPTER 2. CHEMICAL DEFENCE AGAINST BACTERIA IN ASPARAGOPSIS ARMATA: LINKING STRUCTURE WITH FUNCTION.......................................................9 INTRODUCTION ..........................................................................................................................9 -
Populations of a New Morphotype of Corrugate Lessonia Bory in the Beagle Channel, Sub-Antarctic Magellanic Ecoregion: a Possible Case of On-Going Speciation
cryptogamie Algologie 2020 ● 41 ● 11 DIRECTEUR DE LA PUBLICATION / PUBLICATION DIRECTOR : Bruno DAVID Président du Muséum national d’Histoire naturelle RÉDACTRICE EN CHEF / EDITOR-IN-CHIEF : Line LE GALL Muséum national d’Histoire naturelle ASSISTANTE DE RÉDACTION / ASSISTANT EDITOR : Audrina NEVEU ([email protected]) MISE EN PAGE / PAGE LAYOUT : Audrina NEVEU RÉDACTEURS ASSOCIÉS / ASSOCIATE EDITORS Ecoevolutionary dynamics of algae in a changing world Stacy KRUEGER-HADFIELD Department of Biology, University of Alabama, 1300 University Blvd, Birmingham, AL 35294 (United States) Jana KULICHOVA Department of Botany, Charles University, Prague (Czech Repubwlic) Cecilia TOTTI Dipartimento di Scienze della Vita e dell’Ambiente, Università Politecnica delle Marche, Via Brecce Bianche, 60131 Ancona (Italy) Phylogenetic systematics, species delimitation & genetics of speciation Sylvain FAUGERON UMI3614 Evolutionary Biology and Ecology of Algae, Departamento de Ecología, Facultad de Ciencias Biologicas, Pontificia Universidad Catolica de Chile, Av. Bernardo O’Higgins 340, Santiago (Chile) Marie-Laure GUILLEMIN Instituto de Ciencias Ambientales y Evolutivas, Universidad Austral de Chile, Valdivia (Chile) Diana SARNO Department of Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Napoli (Italy) Comparative evolutionary genomics of algae Nicolas BLOUIN Department of Molecular Biology, University of Wyoming, Dept. 3944, 1000 E University Ave, Laramie, WY 82071 (United States) Heroen VERBRUGGEN School of BioSciences,