Abbreviations
Total Page:16
File Type:pdf, Size:1020Kb
Abbreviations AfDD Acriflavine direct detection AODC Acridine orange direct count ARA Arachidonic acid BPE Bleach plant effluent Bya Billion years ago CFU Colony forming unit DGGE Denaturing gradient gel electrophoresis DHA Docosahexaenoic acid DOC Dissolved organic carbon DOM Dissolved organic matter DSE Dark septate endophyte EN Ectoplasmic net EPA Eicosapentaenoic acid FITC Fluorescein isothiocyanate GPP Gross primary production ITS Internal transcribed spacer LDE Lignin-degrading enzyme LSU Large subunit MAA Mycosporine-like amino acid MBSF Metres below surface Mpa Megapascal MPN Most probable number MSW Molasses spent wash MUFA Monounsaturated fatty acid Mya Million years ago NPP Net primary production OMZ Oxygen minimum zone OUT Operational taxonomic unit PAH Polyaromatic hydrocarbon PCR Polymerase chain reaction © Springer International Publishing AG 2017 345 S. Raghukumar, Fungi in Coastal and Oceanic Marine Ecosystems, DOI 10.1007/978-3-319-54304-8 346 Abbreviations POC Particulate organic carbon POM Particulate organic matter PP Primary production Ppt Parts per thousand PUFA Polyunsaturated fatty acid QPX Quahog parasite unknown SAR Stramenopile Alveolate Rhizaria SFA Saturated fatty acid SSU Small subunit TEPS Transparent Extracellular Polysaccharides References Abdel-Waheb MA, El-Sharouny HM (2002) Ecology of subtropical mangrove fungi with empha- sis on Kandelia candel mycota. In: Kevin D (ed) Fungi in marine environments. Fungal Diversity Press, Hong Kong, pp 247–265 Abe F, Miura T, Nagahama T (2001) Isolation of highly copper-tolerant yeast, Cryptococcus sp., from the Japan Trench and the induction of superoxide dismutase activity by Cu2+. Biotechnol Lett 23:2027–2034 Abe F, Minegishi H, Miura T, Nagahama T, Usami R, Horikoshi K (2006) Characterization of cold- and high-pressure-active polygalacturonases from a deep-sea yeast, Cryptococcus liquefaciens strain N6. Biosci Biotechnol Biochem 70:296–299 Addepalli MK, Fumita Y (2002) Regulatory role of external calcium on Pythium porphyrae (Oomycota) zoospore release, development and infection in causing red rot disease of Porphyra yezoensis (Rhodophyta). FEMS Microbiol Lett 21:253–257 Adl SM, Simpson AGB, Lane CE et al (2012) The revised classification of eukaryotes. J Eukaryot Microbiol 59:429–493 Agarwal PK, Shukla PS, Gupta K, Jha B (2013) Bioengineering for salinity tolerance in plants: State of the Art. Mol Biotechnol 54:102–123 Aki T, Hachida K, Yoshinaga M, Katai Y, Yamasaki T et al (2003) Thraustochytrid as a potential source of carotenoids. J Am Oil Chem Soc 80:789–794 Alexander E, Stock A, Breiner H-W, Behnke A, Bunge J, Yakimov MM, Stoeck T (2009) Microbial eukaryotes in the hypersaline anoxic L’Atalante deep-sea basin. Environ Microbiol 11:360–381 Alias SA, Jones EBG (2000) Vertical distribution of marine fungi in Rhizophora apiculata at Morib mangrove, Selangor, Malaysia. Mycoscience 41:431–436 Alker AP, Smith GW, Kim K (2001) Characterization of Aspergillus sydowii (Thom et Church), a fungal pathogen of Caribbean sea fan corals. Hydrobiologia 460:105–111 Alldredge K, Youngbluth M (1995) The significance of macroscopic aggregates (marine snow) as sites for heterotrophic bacterial production in the mesopelagic zone of the subtropical Atlantic. Deep Sea Res Part A 32:1445–1456 Al-Nasrawi HG, Hughes AR (2012) Fungal Diversity associated with salt marsh plants Spartina alterniflora and Juncus roemerianus in Florida. Jordan J Biol Sci 5:247–254 Alva P, McKenzie EHC, Pointing SB, Pena-Muralla R, Hyde KD (2002) Do seagrasses harbour endophytes? In: Hyde KD (ed) Fungi in marine environment, Fungal Diversity Research series, vol 7. Fungal Diversity Press, Hong Kong, pp 167–178 Amann R, Fuchs BM (2008) Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques. Nat Rev Microbiol 6:339–348 © Springer International Publishing AG 2017 347 S. Raghukumar, Fungi in Coastal and Oceanic Marine Ecosystems, DOI 10.1007/978-3-319-54304-8 348 References Amend AS, Barshis DJ, Oliver TA (2012) Coral-associated marine fungi form novel lineages and heterogeneous assemblages. ISME J 6:1291–1301 Amon JP (1978) Thraustochytrids and labyrinthulids of terrestrial, aquatic and hypersaline environments of the Great Salt Lake, USA. Mycologia 70:1299–1301 Amon JP (1984) Rhizophydium littoreum: a chytrid from siphonaceous marine algae—an ultra- structural examination. Mycologia 76:132–139 Anahid S, Yaghmaei S, Ghobadinejad Z (2011) Heavy metal tolerance of fungi. Sci Iran C 18:502–508 Ananda K, Sridhar KR (2004) Diversity of filamentous fungi on decomposing leaf and woody litter of mangrove forests of southwest coast of India. Curr Sci 87:1431–1437 Ananda K, Prasannarai K, Sridhar KR (1998) Occurrence of higher marine fungi on marine animal substrates of some beaches along the west coast of India. Indian J Mar Sci 27:233–236 Ananda K, Sridhar KR, Raviraja NS, Ba¨rlocher F (2008) Breakdown of fresh and dried Rhizophora mucronata leaves in a mangrove of Southwest India. Wetl Ecol Manag 16:1–9 Apt KE (1988) Galls and tumor-like growths on marine macroalgae. Dis Aquat Org 4:211–217 Arfi Y, Marchand C, Wartel M, Record E (2012) Fungal diversity in anoxic-sulfidic sediments in a mangrove soil. Fungal Ecol 5:282–285 Armenta RE, Burja A, Radianingtyas H, Barrow CJ (2006) Critical assessment of various techniques for the extraction of carotenoids and co-enzyme Q10 from the thraustochytrid strain ONC-T18. J Agric Food Chem 54:9752–9758 Arotsker L, Kramarsky-Winter E, Kushmaro A (2011) Coral-associated heterotrophic protists. In: Rosenberg E, Gophna U (eds) Beneficial organisms in multicellular life forms. Springer, Berlin, Heidelberg, pp 151–161 Asmaniadou A, Lipiatou E (eds) (2000) Extreme marine environments. European Commission Community Research Report, Luxembourg Babich H, Stotzky G (1983) Nickel toxicity to estuarine marine fungi and its amelioration by magnesium in sea water. Water Air Soil Pollut 19:193–202 Bahnweg G (1979a) Studies on the physiology of thraustochytriales I. Growth requirements and nitrogen nutrition of Thraustochytrium spp., Schizochytrium sp., Japonochytrium sp., Ulkenia spp., and Labyrinthuloides spp. Veroff€ Inst Meeresforsch Bremerh 17:245–268 Bahnweg G (1979b) Studies on the physiology of thraustochytriales 2. Carbon nutrition of Thraustochytrium spp., Schizochytrium sp., Japonochytrium sp., Ulkenia spp., and Labyrinthuloides spp. Veroff€ Inst Meeresforsch Bremerh 17:269–273 Bahnweg G, Bland CE (1980) Comparative physiology and nutrition of Lagenidium callinectes and Haliphthoros milfordensis, fungal parasites of marine crustaceans. Bot Mar 23:689–698 Bahnweg G, Gotelli D (1980) Physiology and nutrition of Lagenidium callinectes, fungal parasites of the blue crab (Callinectes sapidus). Bot Mar 23:219–225 Bahnweg G, Sparrow FK (1974a) Four new species of Thraustochytrium from Antaractic regions, with notes on the distribution of zoosporic fungi in the Antarctic marine ecosystems. Am J Bot 61:754–766 Bahnweg G, Sparrow FK (1974b) Occurrence, distribution and kinds of zoosporic fungi in Subantarctic and Antarctic waters. Veroff€ Inst Meeresforsch Bremerh Suppl 5:149–157 Bak RPM, Laane RWPM (1987) Annual black bands in skeletons of reef corals (Scleractinia). Mar Ecol Prog Ser 38:169–175 Balabanova LK, Pivkin MV, Rasskazov VA (2012) The distribution and substrate specificity of extracellular nuclease activity in marine fungi. Open J Mar Sci 2:188–195 Barata M (2002) Fungi on the halophyte Spartina maritima in salt marshes. In: Hyde KD (ed) Fungi in marine environments. Fungal Diversity Press, Hong Kong, pp 179–193 Barclay W, Weaver C, Metz J, Hansen J (2010) Development of a docosahexaenoic acid production technology using Schizochytrium: historical perspective and update. In: Cohen Z, Ratledge C (eds) Single cell oils: microbial and algal oils. AOCS Press, Urbana, pp 75–96 Barghoorn ES, Linder DH (1944) Marine fungi: their taxonomy and biology. Farlowia 1:395–467 Ba¨rlocher F, Newell SY (1994) Growth of the saltmarsh periwinkle Littoraria irrorata on fungal and cordgrass diets. Mar Biol 118:109–114 References 349 Ba¨rlocher F, Newell SY, Arsuffi TL (1989) Digestion of Spartina alterniflora Loisel material with and without fungal constitutes by the periwinkle Littorina irrorata Say (Mollusca: Gastropoda). J Exp Mar Biol Ecol 130:45–53 Barr DJS (1992) Evolution and kingdoms of organisms from the perspective of a mycologist. Mycologia 84:1–8 Bass D, Howe A, Brown N, Barton H, Demidova M, Michelle H, Li L, Sanders H, Watkinson SCC, Willcock S, Richards TAA (2007) Yeast forms dominate fungal diversity in the deep oceans. Proc R Soc B 274:3069–3077 Bayne A-CV, Boltz D, Owen C, Betz Y, Maia G (2013) Vaccination against influenza with recombinant hemagglutinin expressed by Schizochytrium sp. confers protective immunity. PLoS One 8:e61790 Beakes GW, Honda D, Thines M (2014) Systematics of the straminipila: labyrinthulomycota, hyphochytriomycota, and oomycota. In: McLaughlin DJ, Spatafora JW (eds) The Mycota VII. Part A. Systematics and evolution, 2nd edn. Springer, Berlin, Heidelberg, pp 39–96 Benner R, Hodgson RE (1985) Microbial degradation of the leachable and lignocellulosic com- ponents of leaves and wood Rhizophora mangle in a tropical mangrove swamp. Mar Ecol Prog Ser 23:221–230 Bentis CJ, Kaufman L, Golubic S (2000) Endolithic fungi in reef-building corals (Order: Scleractinia) are common, cosmopolitan and potentially pathogenic. Biol Bull 198:254–260 Berbee ML, Taylor JW (1993) Dating the evolutionary radiations of the true fungi.