Population Dynamics of Meloidogyne Spp. on Tomato and Cucumber and Biologically-Based Management Strategies
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Biology and Recent Developments in the Systematics of Phoma, a Complex Genus of Major Quarantine Significance Reviews, Critiques
Fungal Diversity Reviews, Critiques and New Technologies Reviews, Critiques and New Technologies Biology and recent developments in the systematics of Phoma, a complex genus of major quarantine significance Aveskamp, M.M.1*, De Gruyter, J.1, 2 and Crous, P.W.1 1CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands 2Plant Protection Service (PD), P.O. Box 9102, 6700 HC Wageningen, The Netherlands Aveskamp, M.M., De Gruyter, J. and Crous, P.W. (2008). Biology and recent developments in the systematics of Phoma, a complex genus of major quarantine significance. Fungal Diversity 31: 1-18. Species of the coelomycetous genus Phoma are ubiquitously present in the environment, and occupy numerous ecological niches. More than 220 species are currently recognised, but the actual number of taxa within this genus is probably much higher, as only a fraction of the thousands of species described in literature have been verified in vitro. For as long as the genus exists, identification has posed problems to taxonomists due to the asexual nature of most species, the high morphological variability in vivo, and the vague generic circumscription according to the Saccardoan system. In recent years the genus was revised in a series of papers by Gerhard Boerema and co-workers, using culturing techniques and morphological data. This resulted in an extensive handbook, the “Phoma Identification Manual” which was published in 2004. The present review discusses the taxonomic revision of Phoma and its teleomorphs, with a special focus on its molecular biology and papers published in the post-Boerema era. Key words: coelomycetes, Phoma, systematics, taxonomy. -
Biodiversity and Chemotaxonomy of Preussia Isolates from the Iberian Peninsula
Mycol Progress DOI 10.1007/s11557-017-1305-1 ORIGINAL ARTICLE Biodiversity and chemotaxonomy of Preussia isolates from the Iberian Peninsula Víctor Gonzalez-Menendez1 & Jesus Martin1 & Jose A. Siles2 & M. Reyes Gonzalez-Tejero3 & Fernando Reyes1 & Gonzalo Platas1 & Jose R. Tormo1 & Olga Genilloud1 Received: 7 September 2016 /Revised: 17 April 2017 /Accepted: 24 April 2017 # German Mycological Society and Springer-Verlag Berlin Heidelberg 2017 Abstract This work documents 32 new Preussia isolates great richness in flora and fauna, where endemic and singular from the Iberian Peninsula, including endophytic and saprobic plants are likely to be present. Although more than strains. The morphological study of the teleomorphs and 10,000 fungal species have been described in Spain anamorphs was combined with a molecular phylogenetic (Moreno-Arroyo 2004), most of them were mushrooms, leav- analysis based on sequences of the ribosomal rDNA gene ing this environment open to other exhaustive fungal studies. cluster and chemotaxonomic studies based on liquid chroma- Very few examples of fungal endophytes have been described tography coupled to electrospray mass spectrometry. Sixteen from the Iberian Peninsula, suggesting that a large number of natural compounds were identified. On the basis of combined new fungal species will be discovered (Collado et al. 2002; analyses, 11 chemotypes are inferred. Oberwinkler et al. 2006; Bills et al. 2012). Members of the Sporormiaceae are widespread and, de- Keywords Preussia . Chemotypes . Mass spectrometry . spite that they are most commonly found on various types of Secondary metabolites animal dung, they can also be isolated from soil, wood, and plant debris. Fungi of Sporormiaceae form dark brown, sep- tate spores with germ slits, and include approximately 100 Introduction species divided into ten genera, including the recently de- scribed genera Forliomyces and Sparticola (Phukhamsakda et al. -
Diversity, Phylogeny, Characterization and Diagnostics of Root-Knot and Lesion Nematodes
Diversity, phylogeny, characterization and diagnostics of root-knot and lesion nematodes Toon Janssen Promotors: Prof. Dr. Wim Bert Prof. Dr. Gerrit Karssen Thesis submitted to obtain the degree of doctor in Sciences, Biology Proefschrift voorgelegd tot het bekomen van de graad van doctor in de Wetenschappen, Biologie 1 Table of contents Acknowledgements Chapter 1: general introduction 1 Organisms under study: plant-parasitic nematodes .................................................... 11 1.1 Pratylenchus: root-lesion nematodes ..................................................................................... 13 1.2 Meloidogyne: root-knot nematodes ....................................................................................... 15 2 Economic importance ..................................................................................................... 17 3 Identification of plant-parasitic nematodes .................................................................. 19 4 Variability in reproduction strategies and genome evolution ..................................... 22 5 Aims .................................................................................................................................. 24 6 Outline of this study ........................................................................................................ 25 Chapter 2: Mitochondrial coding genome analysis of tropical root-knot nematodes (Meloidogyne) supports haplotype based diagnostics and reveals evidence of recent reticulate evolution. 1 Abstract -
433 Among Other Nematodes, Root-Knot Specimens Were Collected from Wheat Ro.Ots Var. Capeiti, C38290. They Were Identified As M
SHORT COMMUNICATIONS 433 Among other nematodes, root-knot specimens were collected from wheat ro.ots var. Capeiti, C38290. They were identified as M. artiellia Franklin, 1961. This root-knot nematode was first reported and described from England on cabbage grown in sandy loam in Norfolk. Other hosts noted by Franklin are oats, barley, wheat, kale, lucerne, pea, ciover and broad bean. All stages off the nematode were found. Second stage larvae were collected from soil samples and from egg masses. Males were found partly or completely within root tissue producing small knots of abnormal, dark coloured cells (Fig. 3), and were .often seen near or around the partly embedded females. The mature females were flask or pear-shaped with neck tapering t.o a small head, and smooth, rounded posterior part with terminal vulva and annulated region around the tail. The perineal patterns were similar to those described by Franklin (1961) and Whitehead (1968) for artiellia (Figs. 1, 2). Measurements. 5 Q Q: L = 640 p (611-675); width = 432 JL (357-458), dorsal oesophageal gland orifice 4.6 a behind stylet base; vulva = 21 p (20-22). Stylet = 14.3 JL. 10 eggs = 95 JL (90-99) X 40 p (40-40.3). 8 8 : L = 872-1090 ,u; width = 27.25-30.6 p. a = 32.3-35; b = 11-14.3; c = 80-83; stylet = 21.8-23.2 it; spicules 25-27 ,a; dorsal oesophageal gland orifice 5.2 p behind stylet base. Many mature females were found only partly embedded in the root and covered completely by the gelatinous sac even before the eggs are laid. -
For Studying Dynamics of the Bacterial Community and Metabolome in Rumen Fluid and the Effects of a Challenge with Clostridium Perfringens
RESEARCH ARTICLE The application of rumen simulation technique (RUSITEC) for studying dynamics of the bacterial community and metabolome in rumen fluid and the effects of a challenge with Clostridium perfringens Stefanie U. Wetzels1☯, Melanie Eger2☯, Marion Burmester2, Lothar Kreienbrock3, Amir Abdulmawjood4, Beate Pinior5, Martin Wagner1, Gerhard Breves2*, Evelyne Mann1* a1111111111 a1111111111 1 Institute for Milk Hygiene, Milk Technology and Food Science, Department for Farm Animals and Veterinary Public Health, University of Veterinary Medicine Vienna, Vienna, Austria, 2 Institute for Physiology, University a1111111111 of Veterinary Medicine Hannover, Hannover, Germany, 3 Institute for Biometry, Epidemiology and a1111111111 Information Processing, University of Veterinary Medicine Hannover, Hannover, Germany, 4 Institute for a1111111111 Food Quality and Food Safety, Research Center for Emerging Infections and Zoonoses (RIZ), University of Veterinary Medicine Hannover, Hannover, Germany, 5 Institute for Veterinary Public Health, Department for Farm Animals and Veterinary Public Health, University of Veterinary Medicine Vienna, Vienna, Austria ☯ These authors contributed equally to this work. * [email protected] (GB); [email protected] (EM) OPEN ACCESS Citation: Wetzels SU, Eger M, Burmester M, Kreienbrock L, Abdulmawjood A, Pinior B, et al. (2018) The application of rumen simulation Abstract technique (RUSITEC) for studying dynamics of the The rumen simulation technique (RUSITEC) is a well-established semicontinuous in vitro bacterial community and metabolome in rumen fluid and the effects of a challenge with Clostridium model for investigating ruminal fermentation; however, information on the stability of the perfringens. PLoS ONE 13(2): e0192256. https:// ruminal bacterial microbiota and metabolome in the RUSITEC system is rarely available. doi.org/10.1371/journal.pone.0192256 The availability of high resolution methods, such as high-throughput sequencing and meta- Editor: Michel R. -
A Polyphasic Approach to Characterise Phoma and Related Pleosporalean Genera
available online at www.studiesinmycology.org StudieS in Mycology 65: 1–60. 2010. doi:10.3114/sim.2010.65.01 Highlights of the Didymellaceae: A polyphasic approach to characterise Phoma and related pleosporalean genera M.M. Aveskamp1, 3*#, J. de Gruyter1, 2, J.H.C. Woudenberg1, G.J.M. Verkley1 and P.W. Crous1, 3 1CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands; 2Dutch Plant Protection Service (PD), Geertjesweg 15, 6706 EA Wageningen, The Netherlands; 3Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands *Correspondence: Maikel M. Aveskamp, [email protected] #Current address: Mycolim BV, Veld Oostenrijk 13, 5961 NV Horst, The Netherlands Abstract: Fungal taxonomists routinely encounter problems when dealing with asexual fungal species due to poly- and paraphyletic generic phylogenies, and unclear species boundaries. These problems are aptly illustrated in the genus Phoma. This phytopathologically significant fungal genus is currently subdivided into nine sections which are mainly based on a single or just a few morphological characters. However, this subdivision is ambiguous as several of the section-specific characters can occur within a single species. In addition, many teleomorph genera have been linked to Phoma, three of which are recognised here. In this study it is attempted to delineate generic boundaries, and to come to a generic circumscription which is more correct from an evolutionary point of view by means of multilocus sequence typing. Therefore, multiple analyses were conducted utilising sequences obtained from 28S nrDNA (Large Subunit - LSU), 18S nrDNA (Small Subunit - SSU), the Internal Transcribed Spacer regions 1 & 2 and 5.8S nrDNA (ITS), and part of the β-tubulin (TUB) gene region. -
Diagnostic Methods for Identification of Root-Knot Nematodes Species from Brazil
Ciência Rural, Santa Maria,Diagnostic v.48: methods 02, e20170449, for identification 2018 of root-knot nematodes specieshttp://dx.doi.org/10.1590/0103-8478cr20170449 from Brazil. 1 ISSNe 1678-4596 CROP PROTECTION Diagnostic methods for identification of root-knot nematodes species from Brazil Tiago Garcia da Cunha1 Liliane Evangelista Visôtto2* Everaldo Antônio Lopes1 Claúdio Marcelo Gonçalves Oliveira3 Pedro Ivo Vieira Good God1 1Instituto de Ciências Agrárias, Universidade Federal de Viçosa (UFV), Campus Rio Paranaíba, Rio Paranaíba, MG, Brasil. 2Instituto de Ciências Biológicas e da Saúde, Universidade Federal de Viçosa (UFV), Campus Rio Paranaíba, 38810-000, Rio Paranaíba, MG, Brasil. E-mail: [email protected]. *Corresponding author. 3Instituto Biológico, Campinas, SP, Brasil. ABSTRACT: The accurate identification of root-knot nematode (RKN) species (Meloidogyne spp.) is essential for implementing management strategies. Methods based on the morphology of adults, isozymes phenotypes and DNA analysis can be used for the diagnosis of RKN. Traditionally, RKN species are identified by the analysis of the perineal patterns and esterase phenotypes. For both procedures, mature females are required. Over the last few decades, accurate and rapid molecular techniques have been validated for RKN diagnosis, including eggs, juveniles and adults as DNA sources. Here, we emphasized the methods used for diagnosis of RKN, including emerging molecular techniques, focusing on the major species reported in Brazil. Key words: DNA, esterase, Meloidogyne, molecular biology, morphological pattern. Métodos diagnósticos usados na identificação de espécies do nematoide das galhas do Brasil RESUMO: A identificação acurada de espécies do nematoide das galhas (NG) (Meloidogyne spp.) é essencial para a implementação de estratégias de manejo. -
Utilization of Phylogenetic Systematics, Molecular Evolution, and Comparative Transcriptomics to Address Aspects of Nematode and Bacterial Evolution
Brigham Young University BYU ScholarsArchive Theses and Dissertations 2010-06-18 Utilization of Phylogenetic Systematics, Molecular Evolution, and Comparative Transcriptomics to Address Aspects of Nematode and Bacterial Evolution Scott M. Peat Brigham Young University - Provo Follow this and additional works at: https://scholarsarchive.byu.edu/etd Part of the Biology Commons BYU ScholarsArchive Citation Peat, Scott M., "Utilization of Phylogenetic Systematics, Molecular Evolution, and Comparative Transcriptomics to Address Aspects of Nematode and Bacterial Evolution" (2010). Theses and Dissertations. 2535. https://scholarsarchive.byu.edu/etd/2535 This Dissertation is brought to you for free and open access by BYU ScholarsArchive. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of BYU ScholarsArchive. For more information, please contact [email protected], [email protected]. Utilization of Phylogenetic Systematics, Molecular Evolution, and Comparative Transcriptomics to Address Aspects of Nematode and Bacterial Evolution Scott M. Peat A dissertation submitted to the faculty of Brigham Young University In partial fulfillment of the requirements for the degree of Doctor of Philosophy Byron J. Adams Keith A. Crandall Michael F. Whiting Alan R. Harker George O. Poinar Department of Biology Brigham Young University August 2010 Copyright © 2010 Scott M. Peat All Rights Reserved ABSTRACT Utilization of Phylogenetic Systematics, Molecular Evolution, and Comparative Transcriptomics to Address Aspects of Nematode and Bacterial Evolution Scott M. Peat Department of Biology Doctor of Philosophy Both insect parasitic/entomopathogenic nematodes and plant parasitic nematodes are of great economic importance. Insect parasitic/entomopathogenic nematodes provide an environmentally safe and effective method to control numerous insect pests worldwide. Alternatively, plant parasitic nematodes cause billions of dollars in crop loss worldwide. -
Phylogenetic Relationships and an Assessment of Traditionally Used
Systematics and Biodiversity ISSN: 1477-2000 (Print) 1478-0933 (Online) Journal homepage: https://www.tandfonline.com/loi/tsab20 Phylogenetic relationships and an assessment of traditionally used taxonomic characters in the Sporormiaceae (Pleosporales, Dothideomycetes, Ascomycota), utilising multi‐gene phylogenies Asa Kruys & Mats Wedin To cite this article: Asa Kruys & Mats Wedin (2009) Phylogenetic relationships and an assessment of traditionally used taxonomic characters in the Sporormiaceae (Pleosporales, Dothideomycetes, Ascomycota), utilising multi‐gene phylogenies, Systematics and Biodiversity, 7:4, 465-478, DOI: 10.1017/S1477200009990119 To link to this article: https://doi.org/10.1017/S1477200009990119 Published online: 11 Mar 2010. Submit your article to this journal Article views: 192 View related articles Citing articles: 29 View citing articles Full Terms & Conditions of access and use can be found at https://www.tandfonline.com/action/journalInformation?journalCode=tsab20 Systematics and Biodiversity 7 (4): 465-478 Issued 1 December 2009 doi:io.ioi7/Si4772oooo999OU9 © The Natural History Museum Phylogenetic relationships and an assessment of traditionally used taxonomic characters in the Sporormiaceae (Pleosporales, Dothideomycetes, Ascomycota), utilising multi-gene phylogenies Asa Kruys1,* & Mats Wedin2 1Department of Systematic Biology, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, SE-752 36 Uppsala, Sweden 2Department of Cryptogamic Botany, Swedish Museum of Natural History, Box 50007, SE-104 05 Stockholm, Sweden submitted February 2009 accepted June 2009 Contents Abstract 465 Introduction 466 Materials and methods 467 Results 469 Discussion 469 Conclusions and suggestions for the future 475 Taxonomy 476 Preussia alloiomera comb. nov. 476 Preussia antarctica comb. nov. 476 Preussia bipartis comb. nov 476 Preussia borealis comb. nov 476 Preussia dubia comb. -
Effect of Azoxystrobin on Turfgrass Phyllosphere
EFFECT OF AZOXYSTROBIN ON TURFGRASS PHYLLOSPHERE MICROBIAL POPULATIONS AND DISEASE ENHANCEMENT A Thesis Presented to The Faculty of Graduate Studies of The University of Guelph by DANIEL BENEDETTO In partial fulfilment of requirements for the degree of Master of Science January, 2008 © Daniel Benedetto, 2008 Library and Bibliotheque et 1*1 Archives Canada Archives Canada Published Heritage Direction du Branch Patrimoine de I'edition 395 Wellington Street 395, rue Wellington Ottawa ON K1A0N4 Ottawa ON K1A0N4 Canada Canada Your file Votre reference ISBN: 978-0-494-41797-3 Our file Notre reference ISBN: 978-0-494-41797-3 NOTICE: AVIS: The author has granted a non L'auteur a accorde une licence non exclusive exclusive license allowing Library permettant a la Bibliotheque et Archives and Archives Canada to reproduce, Canada de reproduire, publier, archiver, publish, archive, preserve, conserve, sauvegarder, conserver, transmettre au public communicate to the public by par telecommunication ou par Plntemet, prefer, telecommunication or on the Internet, distribuer et vendre des theses partout dans loan, distribute and sell theses le monde, a des fins commerciales ou autres, worldwide, for commercial or non sur support microforme, papier, electronique commercial purposes, in microform, et/ou autres formats. paper, electronic and/or any other formats. The author retains copyright L'auteur conserve la propriete du droit d'auteur ownership and moral rights in et des droits moraux qui protege cette these. this thesis. Neither the thesis Ni la these ni des extraits substantiels de nor substantial extracts from it celle-ci ne doivent etre imprimes ou autrement may be printed or otherwise reproduits sans son autorisation. -
1 Meloidogyne Species - a Diverse Group of Novel and Important Plant Parasites
1 Meloidogyne Species - a Diverse Group of Novel and Important Plant Parasites Maurice Moens1, Roland N. Perry2 and James L. Starr3 1 Institute for Agricultural and Fisheries Research, Merelbeke, Belgium and Ghent University, Ghent, Belgium; 2 Rothamsted Research, Harpenden, Hertfordshire, UK and Ghent University, Ghent, Belgium; 3 Texas A&M University, College Station, Texas, USA 1.1 Introduction I 1.2 Impact 2 1.3 History of the Genus 2 1.4 Current Trends in Species Identification 2 1.5 Life Cycle 3 1.6 Diversity in Biology 6 1.7 Major and Emerging Species 8 1.8 Interactions with Other Plant Pathogens 11 1.9 Management and Control 11 1.10 Conclusions and Future Directions 12 1.11 References 13 1.1 Introduction out showing external symptoms on the harvested products, e.g. symptomless potato tubers. The Root-knot nematodes are members or the genus rapid rate of developmem and reproduction on Meloidogyne (Gbldi, 1892), Meloidogyne is of Greek good hosts results, in the majority or species, in origin and means 'apple-shaped female'. They are several generations during one cropping season, an economically important polyphagous group or leading to severe crop damage. Damage may highly adapted obligate plant parasites, are dis• consist of various degrees of stunting, lack or vig• tributed worldwide and parasitize ncarly every our, and wilting under moisture stress. Secondary species of higher plant. Typically thcy reproduce infection by other pathogens often results in and feed on modified living plant cells within extensive decay of nematode-inlected tissues. The plant roots, where they induce small to large galls common explanation for these above-ground or root-knots, hence their vernacular name. -
Columnaris Disease of Fishes
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln US Fish & Wildlife Publications US Fish & Wildlife Service 1986 COLUMNARIS DISEASE OF FISHES G. L. Bullock u.s. Fish and Wildlife Service T. C. Hsu University of Georgia E. B. Shotts Jr. University of Georgia Follow this and additional works at: https://digitalcommons.unl.edu/usfwspubs Part of the Aquaculture and Fisheries Commons Bullock, G. L.; Hsu, T. C.; and Shotts, E. B. Jr., "COLUMNARIS DISEASE OF FISHES" (1986). US Fish & Wildlife Publications. 129. https://digitalcommons.unl.edu/usfwspubs/129 This Article is brought to you for free and open access by the US Fish & Wildlife Service at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in US Fish & Wildlife Publications by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. COLUMNARIS DISEASE OF FISHESl G. L. Bullock u.s. Fish and Wildlife Service National Fisheries Center-Leetown National Fish Health Research Laboratory Box 700, Kearneysville, West Virginia 25430 T. C. Hsu and E. B. Shotts. Jr. Department of Medical Microbiology College of Veterinary Medicine University of Georgia Athens, Georgia 30602 FISH DISEASE LEAFLET 72 UNITED STATES DEPARTMENT OF THE INTERIOR Fish and Wildlife Service Division of Fisheries and Wetlands Research Washington, D.C. 20240 1986 lR " eVISlOn of Fish Disease Leaflet 45 (1976), same title. by S. F. Snieszko and G. L. Bullock. Introduction bacteria penetrate the dermis and cause necrosis of muscle fibers and destruction of capillaries. Both in Pacific salmonids and in warmwater Columnaris disease is an acute to chronic bac pondfishes, columnaris commonly causes exten terial infection that affects anadromous salmonids sive gill necrosis, which starts at the margins of and virtually all species of warmwater fishes.