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Fish and Fishery Products Hazards and Controls Guidance Fourth Edition – APRIL 2011
SGR 129 Fish and Fishery Products Hazards and Controls Guidance Fourth Edition – APRIL 2011 DEPARTMENT OF HEALTH AND HUMAN SERVICES PUBLIC HEALTH SERVICE FOOD AND DRUG ADMINISTRATION CENTER FOR FOOD SAFETY AND APPLIED NUTRITION OFFICE OF FOOD SAFETY Fish and Fishery Products Hazards and Controls Guidance Fourth Edition – April 2011 Additional copies may be purchased from: Florida Sea Grant IFAS - Extension Bookstore University of Florida P.O. Box 110011 Gainesville, FL 32611-0011 (800) 226-1764 Or www.ifasbooks.com Or you may download a copy from: http://www.fda.gov/FoodGuidances You may submit electronic or written comments regarding this guidance at any time. Submit electronic comments to http://www.regulations. gov. Submit written comments to the Division of Dockets Management (HFA-305), Food and Drug Administration, 5630 Fishers Lane, Rm. 1061, Rockville, MD 20852. All comments should be identified with the docket number listed in the notice of availability that publishes in the Federal Register. U.S. Department of Health and Human Services Food and Drug Administration Center for Food Safety and Applied Nutrition (240) 402-2300 April 2011 Table of Contents: Fish and Fishery Products Hazards and Controls Guidance • Guidance for the Industry: Fish and Fishery Products Hazards and Controls Guidance ................................ 1 • CHAPTER 1: General Information .......................................................................................................19 • CHAPTER 2: Conducting a Hazard Analysis and Developing a HACCP Plan -
Metabolic and Genetic Basis for Auxotrophies in Gram-Negative Species
Metabolic and genetic basis for auxotrophies in Gram-negative species Yara Seifa,1 , Kumari Sonal Choudharya,1 , Ying Hefnera, Amitesh Ananda , Laurence Yanga,b , and Bernhard O. Palssona,c,2 aSystems Biology Research Group, Department of Bioengineering, University of California San Diego, CA 92122; bDepartment of Chemical Engineering, Queen’s University, Kingston, ON K7L 3N6, Canada; and cNovo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, 2800 Lyngby, Denmark Edited by Ralph R. Isberg, Tufts University School of Medicine, Boston, MA, and approved February 5, 2020 (received for review June 18, 2019) Auxotrophies constrain the interactions of bacteria with their exist in most free-living microorganisms, indicating that they rely environment, but are often difficult to identify. Here, we develop on cross-feeding (25). However, it has been demonstrated that an algorithm (AuxoFind) using genome-scale metabolic recon- amino acid auxotrophies are predicted incorrectly as a result struction to predict auxotrophies and apply it to a series of the insufficient number of known gene paralogs (26). Addi- of available genome sequences of over 1,300 Gram-negative tionally, these methods rely on the identification of pathway strains. We identify 54 auxotrophs, along with the corre- completeness, with a 50% cutoff used to determine auxotrophy sponding metabolic and genetic basis, using a pangenome (25). A mechanistic approach is expected to be more appropriate approach, and highlight auxotrophies conferring a fitness advan- and can be achieved using genome-scale models of metabolism tage in vivo. We show that the metabolic basis of auxotro- (GEMs). For example, requirements can arise by means of a sin- phy is species-dependent and varies with 1) pathway structure, gle deleterious mutation in a conditionally essential gene (CEG), 2) enzyme promiscuity, and 3) network redundancy. -
Salmon Aquaculture Dialogue Working Group Report on Salmon Disease
Salmon Aquaculture Dialogue Working Group Report on Salmon Disease Larry Hammell - Atlantic Veterinary College, University of Prince Edward Island, Canada Craig Stephen- Centre for Coastal Health, University of Calgary, Canada Ian Bricknell- School of Marine Sciences, University of Maine, USA Øystein Evensen- Norwegian School of Veterinary Medicine, Oslo, Norway Patricio Bustos- ADL Diagnostic Chile Ltda., Chile With Contributions by: Ricardo Enriquez- University of Austral, Chile 1 Citation: Hammell, L., Stephen, C., Bricknell, I., Evensen Ø., and P. Bustos. 2009 “Salmon Aquaculture Dialogue Working Group Report on Salmon Disease” commissioned by the Salmon Aquaculture Dialogue, available at http://wwf.worldwildlife.org/site/PageNavigator/SalmonSOIForm Corresponding author: Larry Hammell, email: [email protected] This report was commissioned by the Salmon Aquaculture Dialogue. The Salmon Dialogue is a multi-stakeholder, multi-national group which was initiated by the World Wildlife Fund in 2004. Participants include salmon producers and other members of the market chain, NGOs, researchers, retailers, and government officials from major salmon producing and consuming countries. The goal of the Dialogue is to credibly develop and support the implementation of measurable, performance-based standards that minimize or eliminate the key negative environmental and social impacts of salmon farming, while permitting the industry to remain economically viable The Salmon Aquaculture Dialogue focuses their research and standard development on seven key areas of impact of salmon production including: social; feed; disease; salmon escapes; chemical inputs; benthic impacts and siting; and, nutrient loading and carrying capacity. Funding for this report and other Salmon Aquaculture Dialogue supported work is provided by the members of the Dialogue‘s steering committee and their donors. -
Some Pathological Changes in Trout Organs Caused by Certain Strains of the Genera Cytophaga and Pseudomonas
University of Montana ScholarWorks at University of Montana Graduate Student Theses, Dissertations, & Professional Papers Graduate School 1954 Some pathological changes in trout organs caused by certain strains of the genera Cytophaga and Pseudomonas John W. Jutila The University of Montana Follow this and additional works at: https://scholarworks.umt.edu/etd Let us know how access to this document benefits ou.y Recommended Citation Jutila, John W., "Some pathological changes in trout organs caused by certain strains of the genera Cytophaga and Pseudomonas" (1954). Graduate Student Theses, Dissertations, & Professional Papers. 6983. https://scholarworks.umt.edu/etd/6983 This Thesis is brought to you for free and open access by the Graduate School at ScholarWorks at University of Montana. It has been accepted for inclusion in Graduate Student Theses, Dissertations, & Professional Papers by an authorized administrator of ScholarWorks at University of Montana. For more information, please contact [email protected]. S O m PATHOLOGICAL CHANCES IN TROUT ORGANS CAUSED BY CERTAIN STRAINS OF THE GENERA CYTOPHAGA AND PSEÜDaîOKAS by JOHN WAYNE JUTILA B* A* Montana State University, 1953 Presented in partial fulfillment of the requirements for the degree of Master of Arts MONTANA STATE UNIVERSITY 1954 Approved b Board of JBxamin D^gm, (hrMuate School / Date Reproduced with permission of the copyright owner. Further reproduction prohibited without permission. UMI Number: EP37784 All rights reserved INFORMATION TO ALL USERS The quality of this reproduction is dependent upon the quality of the copy submitted. In the unlikely event that the author did not send a complete manuscript and there are missing pages, these will be noted. -
2019 ASEAN-FEN 9Th International Fisheries Symposium BOOK of ABSTRACTS
2019 ASEAN-FEN 9th International Fisheries Symposium BOOK OF ABSTRACTS A New Horizon in Fisheries and Aquaculture Through Education, Research and Innovation 18-21 November 2019 Seri Pacific Hotel Kuala Lumpur Malaysia Contents Oral Session Location… .................................................................... 1 Poster Session ...................................................................................... 2 Special Session… ................................................................................ 3 Special Session 1: ....................................................................... 4 Special Session 2: ..................................................................... 10 Special Session 3: ..................................................................... 16 Oral Presentation… ......................................................................... 26 Session 1: Fisheries Biology and Resource Management 1 ………………………………………………………………….…...27 Session 2: Fisheries Biology and Resource Management 2 …………………………………………………………...........….…62 Session 3: Nutrition and Feed........................................................ 107 Session 4: Aquatic Animal Health ................................................ 146 Session 5: Fisheries Socio-economies, Gender, Extension and Education… ..................................................................................... 196 Session 6: Information Technology and Engineering .................. 213 Session 7: Postharvest, Fish Products and Food Safety… ......... 219 Session -
Respiratory Disorders of Fish
This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research and education use, including for instruction at the authors institution and sharing with colleagues. Other uses, including reproduction and distribution, or selling or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most cases authors are permitted to post their version of the article (e.g. in Word or Tex form) to their personal website or institutional repository. Authors requiring further information regarding Elsevier’s archiving and manuscript policies are encouraged to visit: http://www.elsevier.com/copyright Author's personal copy Disorders of the Respiratory System in Pet and Ornamental Fish a, b Helen E. Roberts, DVM *, Stephen A. Smith, DVM, PhD KEYWORDS Pet fish Ornamental fish Branchitis Gill Wet mount cytology Hypoxia Respiratory disorders Pathology Living in an aquatic environment where oxygen is in less supply and harder to extract than in a terrestrial one, fish have developed a respiratory system that is much more efficient than terrestrial vertebrates. The gills of fish are a unique organ system and serve several functions including respiration, osmoregulation, excretion of nitroge- nous wastes, and acid-base regulation.1 The gills are the primary site of oxygen exchange in fish and are in intimate contact with the aquatic environment. In most cases, the separation between the water and the tissues of the fish is only a few cell layers thick. Gills are a common target for assault by infectious and noninfectious disease processes.2 Nonlethal diagnostic biopsy of the gills can identify pathologic changes, provide samples for bacterial culture/identification/sensitivity testing, aid in fungal element identification, provide samples for viral testing, and provide parasitic organisms for identification.3–6 This diagnostic test is so important that it should be included as part of every diagnostic workup performed on a fish. -
Detection and Identification of Fish Pathogens: What Is the Future?
The Israeli Journal of Aquaculture – Bamidgeh 60(4), 2008, 213-229. 213 Detection and Identification of Fish Pathogens: What is the Future? A Review I. Frans1,2†, B. Lievens1,2*†, C. Heusdens1,2 and K.A. Willems1,2 1 Scientia Terrae Research Institute, B-2860 Sint-Katelijne-Waver, Belgium 2 Research Group Process Microbial Ecology and Management, Department Microbial and Molecular Systems, Katholieke Universiteit Leuven Association, De Nayer Campus, B-2860 Sint-Katelijne-Waver, Belgium, and Leuven Food Science and Nutrition Research Centre (LfoRCe), Katholieke Universiteit Leuven, B-3001 Heverlee-Leuven, Belgium (Received 1.8.08, Accepted 20.8.08) Key words: biosecurity, diagnosis, DNA array, multiplexing, real-time PCR Abstract Fish diseases pose a universal threat to the ornamental fish industry, aquaculture, and public health. They can be caused by many organisms, including bacteria, fungi, viruses, and protozoa. The lack of rapid, accurate, and reliable means of detecting and identifying fish pathogens is one of the main limitations in fish pathogen diagnosis and disease management and has triggered the search for alternative diagnostic techniques. In this regard, the advent of molecular biology, especially polymerase chain reaction (PCR), provides alternative means for detecting and iden- tifying fish pathogens. Many techniques have been developed, each requiring its own protocol, equipment, and expertise. A major challenge at the moment is the development of multiplex assays that allow accurate detection, identification, and quantification of multiple pathogens in a single assay, even if they belong to different superkingdoms. In this review, recent advances in molecular fish pathogen diagnosis are discussed with an emphasis on nucleic acid-based detec- tion and identification techniques. -
Yersinia Ruckeri Sp. Nov., the Redmouth (RM) Bacterium
0020-7713/78/0028-0037$02-00/0 INTERNATIONALJOURNAL OF SYSTEMATICBACTERIOLOGY, Jan. 1978, p. 37-44 Vol. 28, No. 1 Copyright 0 1978 International Association of Microbiological Societies Printed in U.S. A. Yersinia ruckeri sp. nov., the Redmouth (RM) Bacterium W. H. EWING,? A. J. ROSS,?t DON J. BRENNER,??? AND G. R. FANNING Division of Biochemistry, Walter Reed Army Institute of Research, Washington, D.C. 20012 Cultures of the redmouth (RM) bacterium, one of the etiological agents of redmouth disease in rainbow trout (Salmo gairdneri) and certain other fishes, were characterized by means of their biochemical reactions, by deoxyribonucleic acid (DNA) hybridization, and by determination of guanine-plus-cytosine(G+C) ratios in DNA. The DNA relatedness studies confirmed the fact that the RM bacteria are members of the family Enterobacteriaceae and that they comprise a single species that is not closely related to any other species of Enterobacteri- aceae. They are about 30% related to species of both Serratia and Yersinia. A comparison of the biochemical reactions of RM bacteria and serratiae indicated that there are many differences between these organisms and that biochemically the RM bacteria are most closely related to yersiniae. The G+C ratios of RM bacteria were approximated to be between 47.5 and 48.5% These values are similar to those of yersiniae but markedly different from those of serratiae. On the basis of their biochemical reactions and their G+C ratios, the RM bacteria are considered to be a new species of Yersinia, for which the name Yersinia ruckeri is proposed. -
A Review of Fish Vaccine Development Strategies: Conventional Methods and Modern Biotechnological Approaches
microorganisms Review A Review of Fish Vaccine Development Strategies: Conventional Methods and Modern Biotechnological Approaches Jie Ma 1,2 , Timothy J. Bruce 1,2 , Evan M. Jones 1,2 and Kenneth D. Cain 1,2,* 1 Department of Fish and Wildlife Sciences, College of Natural Resources, University of Idaho, Moscow, ID 83844, USA; [email protected] (J.M.); [email protected] (T.J.B.); [email protected] (E.M.J.) 2 Aquaculture Research Institute, University of Idaho, Moscow, ID 83844, USA * Correspondence: [email protected] Received: 25 October 2019; Accepted: 14 November 2019; Published: 16 November 2019 Abstract: Fish immunization has been carried out for over 50 years and is generally accepted as an effective method for preventing a wide range of bacterial and viral diseases. Vaccination efforts contribute to environmental, social, and economic sustainability in global aquaculture. Most licensed fish vaccines have traditionally been inactivated microorganisms that were formulated with adjuvants and delivered through immersion or injection routes. Live vaccines are more efficacious, as they mimic natural pathogen infection and generate a strong antibody response, thus having a greater potential to be administered via oral or immersion routes. Modern vaccine technology has targeted specific pathogen components, and vaccines developed using such approaches may include subunit, or recombinant, DNA/RNA particle vaccines. These advanced technologies have been developed globally and appear to induce greater levels of immunity than traditional fish vaccines. Advanced technologies have shown great promise for the future of aquaculture vaccines and will provide health benefits and enhanced economic potential for producers. This review describes the use of conventional aquaculture vaccines and provides an overview of current molecular approaches and strategies that are promising for new aquaculture vaccine development. -
Mouse Anti-Bacteria Yersinia Ruckeri Monoclonal Antibody, Clone 8G6/G7 (DMAB6804) This Product Is for Research Use Only and Is Not Intended for Diagnostic Use
Mouse anti-Bacteria Yersinia Ruckeri Monoclonal antibody, clone 8G6/G7 (DMAB6804) This product is for research use only and is not intended for diagnostic use. PRODUCT INFORMATION Product Overview Mouse anti-bacteria yersinia ruckeri monoclonal antibody. Yersinia Ruckeri IgG fraction obtained by immunizing mice with five Chilean isolates of Yersinia ruckeri (whole bacterial cells). The IgG fraction was purified using Protein G-Sepharose. Antigen Description Y. ruckeri is a Gram-negative, rod-shaped bacterium that shows a variable motility due to the presence of flagella. These flagella are not always observed. It is the causative agent of enteric redmouth disease (ERM) which is characterized by a chronic or acute enterosepticemia with high morbidity and mortality rates in salmonids and non-salmonids species. Six serovars have been described according to whole-cell serological typing. Isotype IgG2b Source/Host Mouse Clone 8G6/G7 Conjugate Unconjugated Applications ELISA, WB, IF Stability Stable at least one year at -20oC. Avoid repeated freezing and thawing. Format Solution at 1.0 mg/ml in PBS. Size 100 μg Preservative None Storage Store at -20ºC. BACKGROUND Introduction Yersinia is a genus of bacteria in the family Enterobacteriaceae. Yersinia are Gram-negative rod shaped bacteria, a few micrometers long and fractions of a micrometer in diameter, and are facultative anaerobes. Some members of Yersinia are pathogenic in humans; in particular, Y. 45-1 Ramsey Road, Shirley, NY 11967, USA Email: [email protected] Tel: 1-631-624-4882 Fax: 1-631-938-8221 1 © Creative Diagnostics All Rights Reserved pestis is the causative agent of the plague. -
Cytophaga Aquatilis Sp
INTERNATIONAL JOURNALOF SYSTEMATIC BACTERIOLOGY, Apr. 1978, p. 293-303 Vol. 28, No. 2 0020-7713/78/0028-0293$02.00/0 Copyright 0 1978 International Association of Microbiological Societies Printed in U.S.A. Cytophaga aquatilis sp. nov., a Facultative Anaerobe Isolated from the Gills of Freshwater Fish WILLIAM R. STROHLT AND LARRY R. TAITtt Department of Biology, Central Michigan University, Mt. Pleasant, Michigan 48859 A facultatively anaerobic, gram-negative, gliding bacterium was isolated from the gills of freshwater fish. Its deoxyribonucleic acid base composition (33.7 mol% guanine plus cytosine), lack of microcysts or fruiting bodies, cell size (0.5 by 8.0 pm), and hydrolysis of carboxymethylcellulose and chitin place it in the genus Cytophaga. This aquatic cytophaga is differentiated from other cytophagas by its fermentation of carbohydrates, proteolytic capabilities, and a number of addi- tional physiological and biochemical tests. The organism was compared to other similar isolates reported from fish, and it appears to belong to a new species, for which the name Cytophaga aquatilis is proposed. The type strain of C. aquatilis, N, has been deposited with the American Type Culture Collection under the accession number 29551. Borg (3) described four strains of facultatively isolates are similar to those strains of faculta- anaerobic cytophagas isolated from salmon at tively anaerobic cytophagas described by Borg the Skagit Fish Hatchery near Seattle, Wash. (3), Pacha and Porter (14), Anderson and Con- He associated those strains with -
For Studying Dynamics of the Bacterial Community and Metabolome in Rumen Fluid and the Effects of a Challenge with Clostridium Perfringens
RESEARCH ARTICLE The application of rumen simulation technique (RUSITEC) for studying dynamics of the bacterial community and metabolome in rumen fluid and the effects of a challenge with Clostridium perfringens Stefanie U. Wetzels1☯, Melanie Eger2☯, Marion Burmester2, Lothar Kreienbrock3, Amir Abdulmawjood4, Beate Pinior5, Martin Wagner1, Gerhard Breves2*, Evelyne Mann1* a1111111111 a1111111111 1 Institute for Milk Hygiene, Milk Technology and Food Science, Department for Farm Animals and Veterinary Public Health, University of Veterinary Medicine Vienna, Vienna, Austria, 2 Institute for Physiology, University a1111111111 of Veterinary Medicine Hannover, Hannover, Germany, 3 Institute for Biometry, Epidemiology and a1111111111 Information Processing, University of Veterinary Medicine Hannover, Hannover, Germany, 4 Institute for a1111111111 Food Quality and Food Safety, Research Center for Emerging Infections and Zoonoses (RIZ), University of Veterinary Medicine Hannover, Hannover, Germany, 5 Institute for Veterinary Public Health, Department for Farm Animals and Veterinary Public Health, University of Veterinary Medicine Vienna, Vienna, Austria ☯ These authors contributed equally to this work. * [email protected] (GB); [email protected] (EM) OPEN ACCESS Citation: Wetzels SU, Eger M, Burmester M, Kreienbrock L, Abdulmawjood A, Pinior B, et al. (2018) The application of rumen simulation Abstract technique (RUSITEC) for studying dynamics of the The rumen simulation technique (RUSITEC) is a well-established semicontinuous in vitro bacterial community and metabolome in rumen fluid and the effects of a challenge with Clostridium model for investigating ruminal fermentation; however, information on the stability of the perfringens. PLoS ONE 13(2): e0192256. https:// ruminal bacterial microbiota and metabolome in the RUSITEC system is rarely available. doi.org/10.1371/journal.pone.0192256 The availability of high resolution methods, such as high-throughput sequencing and meta- Editor: Michel R.