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Comparative Analysis and Implications of the Chloroplast Genomes of Three Thistles (Carduus L., Asteraceae)
Comparative analysis and implications of the chloroplast genomes of three thistles (Carduus L., Asteraceae) Joonhyung Jung1,*, Hoang Dang Khoa Do1,2,*, JongYoung Hyun1, Changkyun Kim1 and Joo-Hwan Kim1 1 Department of Life Science, Gachon University, Seongnam, Gyeonggi, Korea 2 Nguyen Tat Thanh Hi-Tech Institute, Nguyen Tat Thanh University, Ho Chi Minh City, Vietnam * These authors contributed equally to this work. ABSTRACT Background. Carduus, commonly known as plumeless thistles, is a genus in the Asteraceae family that exhibits both medicinal value and invasive tendencies. However, the genomic data of Carduus (i.e., complete chloroplast genomes) have not been sequenced. Methods. We sequenced and assembled the chloroplast genome (cpDNA) sequences of three Carduus species using the Illumina Miseq sequencing system and Geneious Prime. Phylogenetic relationships between Carduus and related taxa were reconstructed using Maximum Likelihood and Bayesian Inference analyses. In addition, we used a single nucleotide polymorphism (SNP) in the protein coding region of the matK gene to develop molecular markers to distinguish C. crispus from C. acanthoides and C. tenuiflorus. Results. The cpDNA sequences of C. crispus, C. acanthoides, and C. tenuiflorus ranged from 152,342 bp to 152,617 bp in length. Comparative genomic analysis revealed high conservation in terms of gene content (including 80 protein-coding, 30 tRNA, and four rRNA genes) and gene order within the three focal species and members of subfamily Carduoideae. Despite their high similarity, the three species differed with respect to the number and content of repeats in the chloroplast genome. Additionally, eight Submitted 28 February 2020 hotspot regions, including psbI-trnS_GCU, trnE_UUC-rpoB, trnR_UCU-trnG_UCC, Accepted 11 December 2020 Published 14 January 2021 psbC-trnS_UGA, trnT_UGU-trnL_UAA, psbT-psbN, petD-rpoA, and rpl16-rps3, were identified in the study species. -
Early Evolution of the Angiosperm Clade Asteraceae in the Cretaceous of Antarctica
Early evolution of the angiosperm clade Asteraceae in the Cretaceous of Antarctica Viviana D. Barredaa,1,2, Luis Palazzesia,b,1, Maria C. Telleríac, Eduardo B. Oliverod, J. Ian Rainee, and Félix Forestb aDivisión Paleobotánica, Museo Argentino de Ciencias Naturales “Bernardino Rivadavia,” Consejo Nacional de Investigaciones Cientificas y Técnicas, Buenos Aires C1405DJR, Argentina; bJodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3DS, United Kingdom; cLaboratorio de Sistemática y Biología Evolutiva, Museo de La Plata, La Plata B1900FWA, Argentina; dCentro Austral de Investigaciones Científicas, Consejo Nacional de Investigaciones Cientificas y Técnicas, 9410 Ushuaia, Tierra del Fuego, Argentina; and eDepartment of Palaeontology, GNS Science, Lower Hutt 5040, New Zealand Edited by Michael J. Donoghue, Yale University, New Haven, CT, and approved July 15, 2015 (received for review December 10, 2014) The Asteraceae (sunflowers and daisies) are the most diverse Here we report fossil pollen evidence from exposed Campanian/ family of flowering plants. Despite their prominent role in extant Maastrichtian sediments from the Antarctic Peninsula (Fig. 1, Fig. S1, terrestrial ecosystems, the early evolutionary history of this family and SI Materials and Methods, Fossiliferous Localities)(7)thatradi- remains poorly understood. Here we report the discovery of a cally changes our understanding of the early evolution of Asteraceae. number of fossil pollen grains preserved in dinosaur-bearing deposits from the Late Cretaceous of Antarctica that drastically pushes back Results and Discussion the timing of assumed origin of the family. Reliably dated to ∼76–66 The pollen grains reported here and discovered in the Late Cre- Mya, these specimens are about 20 million years older than previ- taceous of Antarctica are tricolporate, microechinate, with long ously known records for the Asteraceae. -
Suitability of Root and Rhizome Anatomy for Taxonomic
Scientia Pharmaceutica Article Suitability of Root and Rhizome Anatomy for Taxonomic Classification and Reconstruction of Phylogenetic Relationships in the Tribes Cardueae and Cichorieae (Asteraceae) Elisabeth Ginko 1,*, Christoph Dobeš 1,2,* and Johannes Saukel 1,* 1 Department of Pharmacognosy, Pharmacobotany, University of Vienna, Althanstrasse 14, Vienna A-1090, Austria 2 Department of Forest Genetics, Research Centre for Forests, Seckendorff-Gudent-Weg 8, Vienna A-1131, Austria * Correspondence: [email protected] (E.G.); [email protected] (C.D.); [email protected] (J.S.); Tel.: +43-1-878-38-1265 (C.D.); +43-1-4277-55273 (J.S.) Academic Editor: Reinhard Länger Received: 18 August 2015; Accepted: 27 May 2016; Published: 27 May 2016 Abstract: The value of root and rhizome anatomy for the taxonomic characterisation of 59 species classified into 34 genera and 12 subtribes from the Asteraceae tribes Cardueae and Cichorieae was assessed. In addition, the evolutionary history of anatomical characters was reconstructed using a nuclear ribosomal DNA sequence-based phylogeny of the Cichorieae. Taxa were selected with a focus on pharmaceutically relevant species. A binary decision tree was constructed and discriminant function analyses were performed to extract taxonomically relevant anatomical characters and to infer the separability of infratribal taxa, respectively. The binary decision tree distinguished 33 species and two subspecies, but only five of the genera (sampled for at least two species) by a unique combination of hierarchically arranged characters. Accessions were discriminated—except for one sample worthy of discussion—according to their subtribal affiliation in the discriminant function analyses (DFA). However, constantly expressed subtribe-specific characters were almost missing and even in combination, did not discriminate the subtribes. -
3 Tribo Mutisieae Cass
3 Tribo Mutisieae Cass. Eduardo Pasini SciELO Books / SciELO Livros / SciELO Libros PAINI, E. Tribo Mutisieae Cass. In: ROQUE, N. TELES, A.M., and NAKAJIMA, J.N., comp. A família Asteraceae no Brasil: classificação e diversidade [online]. Salvador: EDUFBA, 2017, pp. 43-50. ISBN: 978-85-232-1999-4. https://doi.org/10.7476/9788523219994.0005. All the contents of this work, except where otherwise noted, is licensed under a Creative Commons Attribution 4.0 International license. Todo o conteúdo deste trabalho, exceto quando houver ressalva, é publicado sob a licença Creative Commons Atribição 4.0. Todo el contenido de esta obra, excepto donde se indique lo contrario, está bajo licencia de la licencia Creative Commons Reconocimento 4.0. 3 TRIBO MUTISIEAE CASS. Eduardo Pasini A compreensão da tribo Mutisieae s.l. é essencial para elucidar a radia- ção evolutiva e as relações de parentesco entre as Asteraceae basais (FUNK et al., 2009), além de proporcionar o entendimento de gêneros muito pecu- liares e isolados (BREMER, 1994). Cabrera (1977) realizou o estudo mais completo e global envolvendo a tribo Mutisieae, cuja classificação serviu de subsídio até a descoberta da subtribo Barnadesiinae Benth. & Hook como grupo irmão para o resto da família (JANSEN; PALMER, 1987). Estudos revisivos e cladísticos, como de Cabrera (1977), Hansen (1991), Karis, Kallersjoån e Bremer (1992), Bremer e Jansen 1992 e Bremer (1994, 1996), invariavelmente, concluíram que a tribo Mutisieae (sensu Cabrera) era parafilética e necessitava ser desmembrada. Contudo, esses estudos não apresentaram um consenso para a obtenção de uma classificação estável para o grupo, de modo que conclusões sobre a sua circunscrição eram ainda contraditórias. -
The Origin of the Bifurcating Style in Asteraceae (Compositae)
Annals of Botany 117: 1009–1021, 2016 doi:10.1093/aob/mcw033, available online at www.aob.oxfordjournals.org The origin of the bifurcating style in Asteraceae (Compositae) Liliana Katinas1,2,*, Marcelo P. Hernandez 2, Ana M. Arambarri2 and Vicki A. Funk3 1Division Plantas Vasculares, Museo de La Plata, La Plata, Argentina, 2Laboratorio de Morfologıa Comparada de Espermatofitas (LAMCE), Facultad de Ciencias Agrarias y Forestales, Universidad Nacional de La Plata, La Plata, Argentina and 3Department of Botany, NMNH, Smithsonian Institution, Washington D.C., USA *For correspondence. E-mail [email protected] Received: 20 November 2015 Returned for revision: 22 December 2015 Accepted: 8 January 2016 Published electronically: 20 April 2016 Background and Aims The plant family Asteraceae (Compositae) exhibits remarkable morphological variation in the styles of its members. Lack of studies on the styles of the sister families to Asteraceae, Goodeniaceae and Calyceraceae, obscures our understanding of the origin and evolution of this reproductive feature in these groups. The aim of this work was to perform a comparative study of style morphology and to discuss the relevance of im- portant features in the evolution of Asteraceae and its sister families. Methods The histochemistry, venation and general morphology of the styles of members of Goodeniaceae, Calyceraceae and early branching lineages of Asteraceae were analysed and put in a phylogenetic framework to dis- cuss the relevance of style features in the evolution of these families. Key Results The location of lipophilic substances allowed differentiation of receptive from non-receptive style papillae, and the style venation in Goodeniaceae and Calyceraceae proved to be distinctive. -
Nuclear and Plastid DNA Phylogeny of the Tribe Cardueae (Compositae
1 Nuclear and plastid DNA phylogeny of the tribe Cardueae 2 (Compositae) with Hyb-Seq data: A new subtribal classification and a 3 temporal framework for the origin of the tribe and the subtribes 4 5 Sonia Herrando-Morairaa,*, Juan Antonio Callejab, Mercè Galbany-Casalsb, Núria Garcia-Jacasa, Jian- 6 Quan Liuc, Javier López-Alvaradob, Jordi López-Pujola, Jennifer R. Mandeld, Noemí Montes-Morenoa, 7 Cristina Roquetb,e, Llorenç Sáezb, Alexander Sennikovf, Alfonso Susannaa, Roser Vilatersanaa 8 9 a Botanic Institute of Barcelona (IBB, CSIC-ICUB), Pg. del Migdia, s.n., 08038 Barcelona, Spain 10 b Systematics and Evolution of Vascular Plants (UAB) – Associated Unit to CSIC, Departament de 11 Biologia Animal, Biologia Vegetal i Ecologia, Facultat de Biociències, Universitat Autònoma de 12 Barcelona, ES-08193 Bellaterra, Spain 13 c Key Laboratory for Bio-Resources and Eco-Environment, College of Life Sciences, Sichuan University, 14 Chengdu, China 15 d Department of Biological Sciences, University of Memphis, Memphis, TN 38152, USA 16 e Univ. Grenoble Alpes, Univ. Savoie Mont Blanc, CNRS, LECA (Laboratoire d’Ecologie Alpine), FR- 17 38000 Grenoble, France 18 f Botanical Museum, Finnish Museum of Natural History, PO Box 7, FI-00014 University of Helsinki, 19 Finland; and Herbarium, Komarov Botanical Institute of Russian Academy of Sciences, Prof. Popov str. 20 2, 197376 St. Petersburg, Russia 21 22 *Corresponding author at: Botanic Institute of Barcelona (IBB, CSIC-ICUB), Pg. del Migdia, s. n., ES- 23 08038 Barcelona, Spain. E-mail address: [email protected] (S. Herrando-Moraira). 24 25 Abstract 26 Classification of the tribe Cardueae in natural subtribes has always been a challenge due to the lack of 27 support of some critical branches in previous phylogenies based on traditional Sanger markers. -
Morphological Characters Add Support for Some Members of the Basal Grade of Asteraceae
bs_bs_banner Botanical Journal of the Linnean Society, 2013, 171, 568–586. With 9 figures Morphological characters add support for some members of the basal grade of Asteraceae NÁDIA ROQUE1* and VICKI A. FUNK2 1Instituto de Biologia, Universidade Federal da Bahia, Campus Universitário de Ondina, Salvador, Bahia 40170-110, Brazil 2US National Herbarium, Department of Botany, National Museum of Natural History, Smithsonian Institution MRC 166, Washington DC, 20013-7012, USA Received 17 November 2011; revised 3 April 2012; accepted for publication 1 October 2012 Recent molecular studies in Asteraceae have divided tribe Mutisieae (sensu Cabrera) into 13 tribes and eight subfamilies. Each of the major clades is well supported but the relationships among them are not always clear. Some of the new taxa are easily characterized by morphological data but others are not, chief among the latter being three subfamilies (Stifftioideae, Wunderlichioideae and Gochnatioideae) and the tribe Hyalideae. To under- stand evolution in the family it is critical to investigate potential morphological characters that can help to evaluate the basal lineages of the Asteraceae. The data for this study were taken from 52 species in 24 genera representing the basal groups in the family. Many characters were examined but most of the useful ones were from reproductive structures. Several apomorphies supported a few of the clades. For instance, members of subfamily Wunderlichioideae (Hyalideae and Wunderlichieae) share predominantly ten-ribbed achenes and members of Wunderlichioideae + Stifftioideae share two synapomorphies: 100–150 (200) pappus elements, arranged in (three) four or five series. These apomorphies can be viewed as an indication of a sister-group relationship between the two subfamilies as the placement of Stifftieae was not well resolved by the molecular data. -
Phylogeny and Phylogenetic Nomenclature of the Campanulidae Based on an Expanded Sample of Genes and Taxa
Systematic Botany (2010), 35(2): pp. 425–441 © Copyright 2010 by the American Society of Plant Taxonomists Phylogeny and Phylogenetic Nomenclature of the Campanulidae based on an Expanded Sample of Genes and Taxa David C. Tank 1,2,3 and Michael J. Donoghue 1 1 Peabody Museum of Natural History & Department of Ecology & Evolutionary Biology, Yale University, P. O. Box 208106, New Haven, Connecticut 06520 U. S. A. 2 Department of Forest Resources & Stillinger Herbarium, College of Natural Resources, University of Idaho, P. O. Box 441133, Moscow, Idaho 83844-1133 U. S. A. 3 Author for correspondence ( [email protected] ) Communicating Editor: Javier Francisco-Ortega Abstract— Previous attempts to resolve relationships among the primary lineages of Campanulidae (e.g. Apiales, Asterales, Dipsacales) have mostly been unconvincing, and the placement of a number of smaller groups (e.g. Bruniaceae, Columelliaceae, Escalloniaceae) remains uncertain. Here we build on a recent analysis of an incomplete data set that was assembled from the literature for a set of 50 campanulid taxa. To this data set we first added newly generated DNA sequence data for the same set of genes and taxa. Second, we sequenced three additional cpDNA coding regions (ca. 8,000 bp) for the same set of 50 campanulid taxa. Finally, we assembled the most comprehensive sample of cam- panulid diversity to date, including ca. 17,000 bp of cpDNA for 122 campanulid taxa and five outgroups. Simply filling in missing data in the 50-taxon data set (rendering it 94% complete) resulted in a topology that was similar to earlier studies, but with little additional resolution or confidence. -
Early Evolution of the Angiosperm Clade Asteraceae in the Cretaceous of Antarctica
Early evolution of the angiosperm clade Asteraceae in the Cretaceous of Antarctica Viviana D. Barredaa,1,2, Luis Palazzesia,b,1, Maria C. Telleríac, Eduardo B. Oliverod, J. Ian Rainee, and Félix Forestb aDivisión Paleobotánica, Museo Argentino de Ciencias Naturales “Bernardino Rivadavia,” Consejo Nacional de Investigaciones Cientificas y Técnicas, Buenos Aires C1405DJR, Argentina; bJodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3DS, United Kingdom; cLaboratorio de Sistemática y Biología Evolutiva, Museo de La Plata, La Plata B1900FWA, Argentina; dCentro Austral de Investigaciones Científicas, Consejo Nacional de Investigaciones Cientificas y Técnicas, 9410 Ushuaia, Tierra del Fuego, Argentina; and eDepartment of Palaeontology, GNS Science, Lower Hutt 5040, New Zealand Edited by Michael J. Donoghue, Yale University, New Haven, CT, and approved July 15, 2015 (received for review December 10, 2014) The Asteraceae (sunflowers and daisies) are the most diverse Here we report fossil pollen evidence from exposed Campanian/ family of flowering plants. Despite their prominent role in extant Maastrichtian sediments from the Antarctic Peninsula (Fig. 1, Fig. S1, terrestrial ecosystems, the early evolutionary history of this family and SI Materials and Methods, Fossiliferous Localities)(7)thatradi- remains poorly understood. Here we report the discovery of a cally changes our understanding of the early evolution of Asteraceae. number of fossil pollen grains preserved in dinosaur-bearing deposits from the Late Cretaceous of Antarctica that drastically pushes back Results and Discussion the timing of assumed origin of the family. Reliably dated to ∼76–66 The pollen grains reported here and discovered in the Late Cre- Mya, these specimens are about 20 million years older than previ- taceous of Antarctica are tricolporate, microechinate, with long ously known records for the Asteraceae. -
Asteraceae): Additions to the Genus Acilepis from Southern Asia
PROCEEDINGS OF THE BIOLOGICAL SOCIETY OF WASHINGTON 122(2):131–145. 2009. Studies on the Paleotropical Vernonieae (Asteraceae): additions to the genus Acilepis from southern Asia Harold Robinson* and John J. Skvarla (HR) Department of Botany, MRC-166, National Museum of Natural History, P.O. Box 37012, Smithsonian Institution, Washington, D.C. 20013-7012, U.S.A., e-mail: [email protected]; (JJS) Department of Botany and Microbiology, and Oklahoma Biological Survey, University of Oklahoma, Norman, Oklahoma 73019-6131, U.S.A., e-mail: [email protected] Abstract.—Thirty-three species are recognized in the genus Acilepis with new combinations provided for A. attenuata, A. chiangdaoensis, A. divergens, A. doichangensis, A. fysonii, A. gardneri, A. heynei, A. kingii, A. lobbii, A. namnaoensis, A. nayarii, A. nemoralis, A. ngaoensis, A. ornata, A. peguensis, A. peninsularis, A. principis, A. pseudosutepensis, A. setigera, A. sutepensis, A. thwaitesii, A. tonkinensis,andA. virgata. Acilepis belcheri is described as new. The rhizomiform structure of the pollen muri is discussed and compared with other Vernonieae in Old World Erlangeinae and in New World Lepidaploinae with similar muri. This study continues a series of papers ceous species in Asia under the name by the senior author aimed at delimiting Vernonia were insufficiently known at monophyletic genera within the tribe that time to determine their proper Vernonieae (Asteraceae), broadly sum- placement with regard to Acilepis, includ- marized by Robinson (1999a, 1999b, ing Vernonia attenuata DC. and V. 2007). The principal result has been the divergens (Roxb.) Edgew. These two disintegration of the extremely broad and species, widespread in southern Asia from aphyletic concept of the genus Vernonia India to China, were reviewed but left Schreb. -
6 Tribo Stifftieae D. Don
6 Tribo Stifftieae D. Don Lúcia Moura Conti Nádia Roque SciELO Books / SciELO Livros / SciELO Libros CONTI, L.M., and ROQUE, N. Tribo Stifftieae D. Don. In: ROQUE, N. TELES, A.M., and NAKAJIMA, J.N., comp. A família Asteraceae no Brasil: classificação e diversidade [online]. Salvador: EDUFBA, 2017, pp. 61-65. ISBN: 978-85-232-1999-4. https://doi.org/10.7476/9788523219994.0008. All the contents of this work, except where otherwise noted, is licensed under a Creative Commons Attribution 4.0 International license. Todo o conteúdo deste trabalho, exceto quando houver ressalva, é publicado sob a licença Creative Commons Atribição 4.0. Todo el contenido de esta obra, excepto donde se indique lo contrario, está bajo licencia de la licencia Creative Commons Reconocimento 4.0. 6 TRIBO STIFFTIEAE D. DON Lúcia Moura Conti Nádia Roque A tribo Stifftieae foi descrita por Don (1830) para incluir espécies de Stifftia J.C. Mikan, Anastraphia D. Don e Pentaphorus D. Don. Para o autor, a tribo poderia ser reconhecida pelas flores bissexuais, corola tubulosa, receptáculo epaleáceo, estames insertos na corola, anteras sagitadas e estig- ma papiloso. Posteriormente, diversos autores (CABRERA, 1977; MAGUIRE et al., 1957, PRUSKI, 1991) consideraram as espécies com corola actinomor- fa de Stifftia e outros gêneros centrados nos tepuis (Guianas e Venezuela), como representantes da tribo Mutisieae. Em seguida, Pruski (2004) e Jeffrey (2004), acompanhados por Katinas e colaboradores (2008), recircunscreve- ram a tribo Stifftieae para incluir 6 gêneros (Chimantaea Maguire, Steyerm. & Wurdack, Quelchia N.E. Br., Stenopadus S.F. Blake Stifftia, Stomatochaeta Maguire & Wurdack e Wunderlichia Riedel ex Benth.) e 48 espécies, com base nos capítulos discoides e ramos do estilete rugosos a papilosos dorsalmente. -
Complete List of Literature Cited* Compiled by Franz Stadler
AppendixE Complete list of literature cited* Compiled by Franz Stadler Aa, A.J. van der 1859. Francq Van Berkhey (Johanes Le). Pp. Proceedings of the National Academy of Sciences of the United States 194–201 in: Biographisch Woordenboek der Nederlanden, vol. 6. of America 100: 4649–4654. Van Brederode, Haarlem. Adams, K.L. & Wendel, J.F. 2005. Polyploidy and genome Abdel Aal, M., Bohlmann, F., Sarg, T., El-Domiaty, M. & evolution in plants. Current Opinion in Plant Biology 8: 135– Nordenstam, B. 1988. Oplopane derivatives from Acrisione 141. denticulata. Phytochemistry 27: 2599–2602. Adanson, M. 1757. Histoire naturelle du Sénégal. Bauche, Paris. Abegaz, B.M., Keige, A.W., Diaz, J.D. & Herz, W. 1994. Adanson, M. 1763. Familles des Plantes. Vincent, Paris. Sesquiterpene lactones and other constituents of Vernonia spe- Adeboye, O.D., Ajayi, S.A., Baidu-Forson, J.J. & Opabode, cies from Ethiopia. Phytochemistry 37: 191–196. J.T. 2005. Seed constraint to cultivation and productivity of Abosi, A.O. & Raseroka, B.H. 2003. In vivo antimalarial ac- African indigenous leaf vegetables. African Journal of Bio tech- tivity of Vernonia amygdalina. British Journal of Biomedical Science nology 4: 1480–1484. 60: 89–91. Adylov, T.A. & Zuckerwanik, T.I. (eds.). 1993. Opredelitel Abrahamson, W.G., Blair, C.P., Eubanks, M.D. & More- rasteniy Srednei Azii, vol. 10. Conspectus fl orae Asiae Mediae, vol. head, S.A. 2003. Sequential radiation of unrelated organ- 10. Isdatelstvo Fan Respubliki Uzbekistan, Tashkent. isms: the gall fl y Eurosta solidaginis and the tumbling fl ower Afolayan, A.J. 2003. Extracts from the shoots of Arctotis arcto- beetle Mordellistena convicta.