Tumor Suppressor P14arf Enhances IFN-Γ–Activated Immune Response
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Supplementary Material DNA Methylation in Inflammatory Pathways Modifies the Association Between BMI and Adult-Onset Non- Atopic
Supplementary Material DNA Methylation in Inflammatory Pathways Modifies the Association between BMI and Adult-Onset Non- Atopic Asthma Ayoung Jeong 1,2, Medea Imboden 1,2, Akram Ghantous 3, Alexei Novoloaca 3, Anne-Elie Carsin 4,5,6, Manolis Kogevinas 4,5,6, Christian Schindler 1,2, Gianfranco Lovison 7, Zdenko Herceg 3, Cyrille Cuenin 3, Roel Vermeulen 8, Deborah Jarvis 9, André F. S. Amaral 9, Florian Kronenberg 10, Paolo Vineis 11,12 and Nicole Probst-Hensch 1,2,* 1 Swiss Tropical and Public Health Institute, 4051 Basel, Switzerland; [email protected] (A.J.); [email protected] (M.I.); [email protected] (C.S.) 2 Department of Public Health, University of Basel, 4001 Basel, Switzerland 3 International Agency for Research on Cancer, 69372 Lyon, France; [email protected] (A.G.); [email protected] (A.N.); [email protected] (Z.H.); [email protected] (C.C.) 4 ISGlobal, Barcelona Institute for Global Health, 08003 Barcelona, Spain; [email protected] (A.-E.C.); [email protected] (M.K.) 5 Universitat Pompeu Fabra (UPF), 08002 Barcelona, Spain 6 CIBER Epidemiología y Salud Pública (CIBERESP), 08005 Barcelona, Spain 7 Department of Economics, Business and Statistics, University of Palermo, 90128 Palermo, Italy; [email protected] 8 Environmental Epidemiology Division, Utrecht University, Institute for Risk Assessment Sciences, 3584CM Utrecht, Netherlands; [email protected] 9 Population Health and Occupational Disease, National Heart and Lung Institute, Imperial College, SW3 6LR London, UK; [email protected] (D.J.); [email protected] (A.F.S.A.) 10 Division of Genetic Epidemiology, Medical University of Innsbruck, 6020 Innsbruck, Austria; [email protected] 11 MRC-PHE Centre for Environment and Health, School of Public Health, Imperial College London, W2 1PG London, UK; [email protected] 12 Italian Institute for Genomic Medicine (IIGM), 10126 Turin, Italy * Correspondence: [email protected]; Tel.: +41-61-284-8378 Int. -
The Conserved Ancient Role of Chordate PIAS As a Multilevel
www.nature.com/scientificreports OPEN The conserved ancient role of chordate PIAS as a multilevel repressor of the NF-κB pathway Received: 14 March 2017 Ruihua Wang1,2, Shengfeng Huang1, Xianan Fu1, Guangrui Huang3, Xinyu Yan1, Zirui Yue1, Accepted: 15 November 2017 Shangwu Chen1, Yingqiu Li1 & Anlong Xu1,3 Published: xx xx xxxx In vertebrates, PIAS genes encode versatile cellular regulators, with functions extremely complex and redundant. Here we try to understand their functions from an evolutionary perspective. we evaluate the sequences, expression and molecular functions of amphioxus PIAS genes and compare them with their vertebrate counterparts. Phylogenetic analysis suggests a single PIAS gene in ancestral chordates, which has been duplicated into four families (PIAS1-4) in vertebrates by 2R-WGD but remained single in a basal chordate (amphioxus). Amphioxus PIAS encodes two variants with and without a Serine/ Threonine-rich tail, which are retained in human PIAS1-3 but lost in PIAS4. We show that amphioxus PIAS binds C-terminus of NF-κB Rel and blocks the DNA binding activity. In humans, such function is retained in PIAS1, altered in PIAS4, and lost in PIAS2-3. Instead, PIAS3 has evolved new ability to inhibit Rel by binding RHD and promoting SUMOylation. We show that amphioxus PIAS also inhibits NF-κB by binding with upstream signalling adaptor TICAM-like and MyD88. Finally, we verify that human PIAS1, 3 and 4, but not 2, were capable of these newly-discovered functions. Our study ofers insight into the sub- and neo-functionalization of PIAS genes and suggests a conserved ancient role for chordate PIAS in NF-κB signalling. -
Modulation of STAT Signaling by STAT-Interacting Proteins
Oncogene (2000) 19, 2638 ± 2644 ã 2000 Macmillan Publishers Ltd All rights reserved 0950 ± 9232/00 $15.00 www.nature.com/onc Modulation of STAT signaling by STAT-interacting proteins K Shuai*,1 1Departments of Medicine and Biological Chemistry, University of California, Los Angeles, California, CA 90095, USA STATs (signal transducer and activator of transcription) play important roles in numerous cellular processes Interaction with non-STAT transcription factors including immune responses, cell growth and dierentia- tion, cell survival and apoptosis, and oncogenesis. In Studies on the promoters of a number of IFN-a- contrast to many other cellular signaling cascades, the induced genes identi®ed a conserved DNA sequence STAT pathway is direct: STATs bind to receptors at the named ISRE (interferon-a stimulated response element) cell surface and translocate into the nucleus where they that mediates IFN-a response (Darnell, 1997; Darnell function as transcription factors to trigger gene activa- et al., 1994). Stat1 and Stat2, the ®rst known members tion. However, STATs do not act alone. A number of of the STAT family, were identi®ed in the transcription proteins are found to be associated with STATs. These complex ISGF-3 (interferon-stimulated gene factor 3) STAT-interacting proteins function to modulate STAT that binds to ISRE (Fu et al., 1990, 1992; Schindler et signaling at various steps and mediate the crosstalk of al., 1992). ISGF-3 consists of a Stat1:Stat2 heterodimer STATs with other cellular signaling pathways. This and a non-STAT protein named p48, a member of the article reviews the roles of STAT-interacting proteins in IRF (interferon regulated factor) family (Levy, 1997). -
Post-Translational Modifications of the Energy Guardian AMP-Activated
International Journal of Molecular Sciences Review Post-Translational Modifications of the Energy Guardian AMP-Activated Protein Kinase Ashley J. Ovens 1,2 , John W. Scott 2,3,4 , Christopher G. Langendorf 3, Bruce E. Kemp 2,3, Jonathan S. Oakhill 1,2 and William J. Smiles 1,* 1 Metabolic Signalling Laboratory, St Vincent’s Institute of Medical Research, School of Medicine, University of Melbourne, Fitzroy, VIC 3065, Australia; [email protected] (A.J.O.); [email protected] (J.S.O.) 2 Mary MacKillop Institute for Health Research, Australian Catholic University, Fitzroy, VIC 3000, Australia; [email protected] (J.W.S.); [email protected] (B.E.K.) 3 Protein Chemistry & Metabolism, St Vincent’s Institute of Medical Research, School of Medicine, University of Melbourne, Fitzroy, VIC 3065, Australia; [email protected] 4 The Florey Institute of Neuroscience and Mental Health, Parkville, VIC 3052, Australia * Correspondence: [email protected] Abstract: Physical exercise elicits physiological metabolic perturbations such as energetic and ox- idative stress; however, a diverse range of cellular processes are stimulated in response to combat these challenges and maintain cellular energy homeostasis. AMP-activated protein kinase (AMPK) is a highly conserved enzyme that acts as a metabolic fuel sensor and is central to this adaptive response to exercise. The complexity of AMPK’s role in modulating a range of cellular signalling cascades is well documented, yet aside from its well-characterised regulation by activation loop phosphorylation, AMPK is further subject to a multitude of additional regulatory stimuli. There- fore, in this review we comprehensively outline current knowledge around the post-translational Citation: Ovens, A.J; Scott, J.W; modifications of AMPK, including novel phosphorylation sites, as well as underappreciated roles for Langendorf, C.G; Kemp, B.E; Oakhill, ubiquitination, sumoylation, acetylation, methylation and oxidation. -
Downloaded from As a Tab-Delimited file, in Which Genes Are Represented in Rows and Phenotypes in Columns
cells Article Network of Interactions between ZIKA Virus Non-Structural Proteins and Human Host Proteins 1, 1,2, 2 Volha A. Golubeva y , Thales C. Nepomuceno y , Giuliana de Gregoriis , Rafael D. Mesquita 3, Xueli Li 1, Sweta Dash 1,4, Patrícia P. Garcez 5 , Guilherme Suarez-Kurtz 2 , Victoria Izumi 6, John Koomen 7, Marcelo A. Carvalho 2,8,* and Alvaro N. A. Monteiro 1,* 1 Cancer Epidemiology Program, H. Lee Moffitt Cancer Center and Research Institute, Tampa, FL 33612, USA; [email protected] (V.A.G.); [email protected] (T.C.N.); xueli.li@moffitt.org (X.L.); sweta.dash@moffitt.org (S.D.) 2 Divisão de Pesquisa Clínica, Instituto Nacional de Câncer, Rio de Janeiro 20230-130, Brazil; [email protected] (G.d.G.); [email protected] (G.S.-K.) 3 Departamento de Bioquímica, Instituto de Química, Federal University of Rio de Janeiro, Rio de Janeiro 21941-909, Brazil; [email protected] 4 Cancer Biology PhD Program, University of South Florida, Tampa, FL 33612, USA 5 Institute of Biomedical Science, Federal University of Rio de Janeiro, Rio de Janeiro 20230-130, Brazil; [email protected] 6 Proteomics and Metabolomics Core, H. Lee Moffitt Cancer Center and Research Institute, Tampa, FL 33612, USA; victoria.izumi@moffitt.org 7 Chemical Biology and Molecular Medicine Program, H. Lee Moffitt Cancer Center and Research Institute, Tampa, FL 33612, USA; john.koomen@moffitt.org 8 Instituto Federal do Rio de Janeiro-IFRJ, Rio de Janeiro 20270-021, Brazil * Correspondence: [email protected] (M.A.C.); alvaro.monteiro@moffitt.org (A.N.A.M.); Tel.: +55-21-2566-7774 (M.A.C.); +813-7456321 (A.N.A.M.) These authors contributed equally to this work. -
Distinct E€Ects of PIAS Proteins on Androgen-Mediated Gene Activation
Oncogene (2001) 20, 3880 ± 3887 ã 2001 Nature Publishing Group All rights reserved 0950 ± 9232/01 $15.00 www.nature.com/onc Distinct eects of PIAS proteins on androgen-mediated gene activation in prostate cancer cells Mitchell Gross1, Bin Liu1, Jiann-an Tan3, Frank S French3, Michael Carey2 and Ke Shuai*,1,2 1Division of Hematology-Oncology, Department of Medicine, University of California, Los Angeles, California, CA 90095, USA; 2Department of Biological Chemistry, University of California, Los Angeles, California, CA 90095, USA; 3The Laboratories for Reproductive Biology, Department of Pediatrics, University of North Carolina School of Medicine, Chapel Hill, North Carolina, NC 27599-7500, USA Androgen signaling in¯uences the development and The androgen receptor (AR) is a member of the growth of prostate carcinoma. The transcriptional nuclear receptor (NR) superfamily (Bentel and Tilley, activity of androgen receptor (AR) is regulated by 1996). NRs have conserved domain structures (Freed- positive or negative transcriptional cofactors. We report man, 1999). At the N-terminus is the ligand- here that PIAS1, PIAS3, and PIASy of the protein independent transcriptional activation domain (AF- inhibitor of activated STAT (PIAS) family, which are 1). The central domain contains two zinc ®nger expressed in human prostate, display distinct eects on structures that are involved in DNA binding (DBD). AR-mediated gene activation in prostate cancer cells. The C-terminal region is the ligand binding domain While PIAS1 and PIAS3 enhance the transcriptional (LBD). In addition, an essential ligand-dependent activity of AR, PIASy acts as a potent inhibitor of AR transactivation domain (AF-2) is localized in the C- in prostate cancer cells. -
Dynamics of RIF1 Sumoylation Is Regulated by PIAS4 in The
www.nature.com/scientificreports Correction: Author Correction OPEN Dynamics of RIF1 SUMOylation is regulated by PIAS4 in the maintenance of Genomic Stability Received: 26 July 2017 Ramesh Kumar1,2,5 & Chit Fang Cheok1,2,3,4 Accepted: 20 November 2017 RIF1 plays a key role in inhibiting DNA end resection and promoting NHEJ mediated DNA double Published: xx xx xxxx stand break repair in G1. However, whether SUMOlyation may regulate RIF1 functions is still largely unknown. Here, we report that RIF1 is SUMOlyated in response to DNA damage. We identifed PIAS4 as the primary SUMO E3 ligase required for the SUMOylation of RIF1 protein. Mammalian cells compromised of PIAS4 expression, show impaired RIF1 SUMOylation and defective for the disassembly of DNA damage responsive RIF1 foci. Mechanistically, we show that PIAS4 knockdown abrogates UHRF1-dependent ubiquitination of RIF1, compromising RIF1 protein turnover. We detected intense RPA foci that colocalize with RIF1 foci in PIAS4 knockdown cells. These data highlight an important role of PIAS4-dependent regulation of RIF1, likely mediated by SUMOylation, in the disassembly of RIF1 DNA damage response (DDR) foci. We propose that unresolved RIF1 protein at sites of DNA damage in PIAS4-depleted cells largely accumulates in S phase, and subsequently leads to DNA double strand breaks. Therefore, PIAS4 promotes genomic stability by regulating the timely removal of RIF1 from sites of DNA damage. DNA damage activates a wide range of responses including altered gene expression, cell cycle arrest and activation of DNA repair1. To preserve genome integrity afer genotoxic insult, eukaryotic cells have developed a highly conserved surveillance mechanism, collectively termed the DNA damage response (DDR) pathway2,3. -
PIAS1 Potentiates the Anti-EBV Activity of SAMHD1 Through Sumoylation
Saiada et al. Cell Biosci (2021) 11:127 https://doi.org/10.1186/s13578-021-00636-y Cell & Bioscience RESEARCH Open Access PIAS1 potentiates the anti-EBV activity of SAMHD1 through SUMOylation Farjana Saiada1, Kun Zhang1 and Renfeng Li1,2,3* Abstract Background: Sterile alpha motif and HD domain 1 (SAMHD1) is a deoxynucleotide triphosphohydrolase (dNTPase) that restricts the infection of a variety of RNA and DNA viruses, including herpesviruses. The anti-viral function of SAMHD1 is associated with its dNTPase activity, which is regulated by several post-translational modifcations, includ- ing phosphorylation, acetylation and ubiquitination. Our recent studies also demonstrated that the E3 SUMO ligase PIAS1 functions as an Epstein-Barr virus (EBV) restriction factor. However, whether SAMHD1 is regulated by PIAS1 to restrict EBV replication remains unknown. Results: In this study, we showed that PIAS1 interacts with SAMHD1 and promotes its SUMOylation. We identifed three lysine residues (K469, K595 and K622) located on the surface of SAMHD1 as the major SUMOylation sites. We demonstrated that phosphorylated SAMHD1 can be SUMOylated by PIAS1 and SUMOylated SAMHD1 can also be phosphorylated by viral protein kinases. We showed that SUMOylation-defcient SAMHD1 loses its anti-EBV activity. Furthermore, we demonstrated that SAMHD1 is associated with EBV genome in a PIAS1-dependent manner. Conclusion: Our study reveals that PIAS1 synergizes with SAMHD1 to inhibit EBV lytic replication through protein– protein interaction and SUMOylation. Keywords: SAMHD1, PIAS1, Restriction factor, Epstein-Barr virus, Cytomegalovirus, SUMOylation, Herpesvirus, Deoxynucleotide triphosphohydrolase, Phosphorylation Background and human simplex virus 1 (HSV-1) [2–7], vaccinia virus Host restriction factors serve as the frst line of defense [2], human T cell leukemia virus type 1 [8], hepatitis B against viral infection through blocking virus entry, virus [9] and human papillomavirus 16 [10]. -
Plots of Observed and Expected Χ2 Values of Association Between SNP Genotype and Risk of Chronic Lymphocytic Leukemia
λ = 0.9955 λ = 1.001 a) 60 b) 60 50 50 40 40 values values 2 2 30 30 χ χ 20 20 observed observed 10 10 0 0 0 10 20 30 40 50 60 0 10 20 30 40 50 60 expected χ2 values expected χ2 values λ = 0.9992 λ = 1.1054 c) 60 d) 60 50 50 40 40 values values 2 2 30 30 χ χ 20 20 observed observed 10 10 0 0 0 10 20 30 40 50 60 0 10 20 30 40 50 60 expected χ2 values expected χ2 values λ = 1.0268 λ = 1.0175 e) 60 f) 60 50 50 40 40 values values 2 2 30 30 χ χ 20 20 observed observed 10 10 0 0 0 10 20 30 40 50 60 0 10 20 30 40 50 60 expected χ2 values expected χ2 values Supplementary Figure 1: Quantile-Quantile (Q-Q) plots of observed and expected χ2 values of association between SNP genotype and risk of chronic lymphocytic leukemia. a) UK-CLL1, b) UK-CLL2, c) GEC, d) NHL GWAS, e) UCSF and f) Utah. The red line represents the null hypothesis of no true association. a) rs34676223 Chromosome 1 position (kb, hg19) 23,945 23,950 23,955 23,960 23,965 23,970 23,975 23,980 23,985 Super- CD19+ B-cell enhancers GM12878 MDS2 Genes MDS2 SNPs 4245 _ mCLL 0 _ 3352 _ uCLL ATAC-seq 0 _ 500 _ CD19+ CD20+ B-cell 0 _ 200 _ mCLL H3K27ac 0 _ 200 _ uCLL H3K27ac 0 _ 200 _ Histone mCLL H3K4me1 0 _ marks: 200 _ uCLL CLL H3K4me1 0 _ 50 _ mCLL H3K27me3 0 _ 50 _ uCLL H3K27me3 0 _ 50 _ GM12878 H3K27ac 0 _ Histone 50 _ marks: GM12878 H3K4me1 0 _ GM12878 50 _ GM12878 H3K27me3 0 _ b) rs41271473 Chromosome 1 position (kb, hg19) 228,750 228,800 228,850 228,900 Super- CD19+ B-cell enhancers GM12878 Genes RHOU SNPs 374 _ mCLL 0 _ 316 _ uCLL ATAC-seq 0 _ 200 _ CD19+ CD20+ B-cell 0 _ mCLL 50 -
4754.Full-Text.Pdf
Tripartite Motif-Containing Protein 28 Is a Small Ubiquitin-Related Modifier E3 Ligase and Negative Regulator of IFN Regulatory Factor 7 This information is current as of September 29, 2021. Qiming Liang, Hongying Deng, Xiaojuan Li, Xianfang Wu, Qiyi Tang, Tsung-Hsien Chang, Hongzhuang Peng, Frank J. Rauscher III, Keiko Ozato and Fanxiu Zhu J Immunol 2011; 187:4754-4763; Prepublished online 21 September 2011; Downloaded from doi: 10.4049/jimmunol.1101704 http://www.jimmunol.org/content/187/9/4754 http://www.jimmunol.org/ References This article cites 62 articles, 25 of which you can access for free at: http://www.jimmunol.org/content/187/9/4754.full#ref-list-1 Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists by guest on September 29, 2021 • Fast Publication! 4 weeks from acceptance to publication *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology Tripartite Motif-Containing Protein 28 Is a Small Ubiquitin-Related Modifier E3 Ligase and Negative Regulator of IFN Regulatory Factor 7 Qiming Liang,* Hongying Deng,* Xiaojuan Li,* Xianfang Wu,* Qiyi Tang,† Tsung-Hsien Chang,‡ Hongzhuang Peng,x Frank J. -
2653.Full.Pdf
Characterization of a PIAS4 Homologue from Zebrafish: Insights into Its Conserved Negative Regulatory Mechanism in the TRIF, MAVS, and IFN Signaling Pathways during This information is current as Vertebrate Evolution of September 25, 2021. Ran Xiong, Li Nie, Li-xin Xiang and Jian-zhong Shao J Immunol 2012; 188:2653-2668; Prepublished online 17 February 2012; doi: 10.4049/jimmunol.1100959 Downloaded from http://www.jimmunol.org/content/188/6/2653 Supplementary http://www.jimmunol.org/content/suppl/2012/02/17/jimmunol.110095 http://www.jimmunol.org/ Material 9.DC1 References This article cites 72 articles, 33 of which you can access for free at: http://www.jimmunol.org/content/188/6/2653.full#ref-list-1 Why The JI? Submit online. by guest on September 25, 2021 • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2012 by The American Association of Immunologists, Inc. All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology Characterization of a PIAS4 Homologue from Zebrafish: Insights into Its Conserved Negative Regulatory Mechanism in the TRIF, MAVS, and IFN Signaling Pathways during Vertebrate Evolution Ran Xiong, Li Nie, Li-xin Xiang, and Jian-zhong Shao Members of the protein inhibitor of activated STAT (PIAS) family are key regulators of various human and mammalian signaling pathways, but data on their occurrence and functions in ancient vertebrates are limited. -
Signaling This Information Is Current As of September 26, 2021
IL-2 Requirement for Human Plasma Cell Generation: Coupling Differentiation and Proliferation by Enhancing MAPK−ERK Signaling This information is current as of September 26, 2021. Simon Le Gallou, Gersende Caron, Céline Delaloy, Delphine Rossille, Karin Tarte and Thierry Fest J Immunol 2012; 189:161-173; Prepublished online 25 May 2012; doi: 10.4049/jimmunol.1200301 Downloaded from http://www.jimmunol.org/content/189/1/161 Supplementary http://www.jimmunol.org/content/suppl/2012/05/25/jimmunol.120030 http://www.jimmunol.org/ Material 1.DC1 References This article cites 55 articles, 29 of which you can access for free at: http://www.jimmunol.org/content/189/1/161.full#ref-list-1 Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision by guest on September 26, 2021 • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2012 by The American Association of Immunologists, Inc. All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology IL-2 Requirement for Human Plasma Cell Generation: Coupling Differentiation and Proliferation by Enhancing MAPK–ERK Signaling Simon Le Gallou,*,†,‡,1,2 Gersende Caron,*,†,‡,x,1 Ce´line Delaloy,*,†,‡,x,1 Delphine Rossille,x,{ Karin Tarte,*,†,‡,x and Thierry Fest*,†,‡,x Mature B cell differentiation involves a well-established transcription factor cascade.