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ART/SMSG/SAERI Expedition Report: Hummock Island February 2021
ART/SMSG/SAERI Expedition Report: Hummock Island February 2021 Significance of peat dust and terrestrial erosion for marine communities around Hummock Island Amy Guest, Dr Paul Brewin, Dr Paul Brickle, Dr Karen von Juterzenka, and Dr Klemens Pütz Cosmasterias lurida (beaded starfish) and Munida gregaria (lobster krill) on a peat covered sandy substrate, Hummock Island February 2021 ART/SMSG/SAERI expedition report: Hummock Island, February 2021 Logistics Expedition dates: 4 - 14th Feb 2021 (for Daily Log see Appendix 1; Dive log see Appendix 2) Vessels: SMSG Fram (5.8 m RHIB), launched from Roy Cove; Sailing Yacht Porvenir II. Accommodation: Roy Cove self-catering, ART House Hummock Island Participants: Dr Paul Brickle (Co-PI) Dr Paul Brewin (Co-PI) Steve Cartwright (Dive Officer / Coxswain) Joost Pompert (Scientist / Surveyor) Sacha Cleminson (Scientist / Surveyor) 4th – 8th February, N.B. flew out from Fox Bay. Amy Guest (PhD Student / Surveyor / Logistics) Sally Poncet (Antarctic Research Trust) Ken Passfield (Antarctic Research Trust) Background Hummock Island lies to the west of West Falkland (Figure 1). Like on other islands in the Falklands, Hummock Island´s rocky surface is covered by peat soil. Decades of grazing on the island has led to de- vegetation of about one third of the 303 ha and subsequent substantial erosion. Large areas were replaced by black ground indicating the extension and distribution of exposed peat soil. The Antarctic Research Trust (ART) is currently re-vegetating the island by tussac planting campaigns. Tussac roots and above ground blade structures will stabilise the peat soil and, moreover, will prove very efficient in storage of atmospheric carbon. -
South Georgia Icefish Pelagic Trawl
MSC SUSTAINABLE FISHERIES CERTIFICATION South Georgia Icefish Pelagic Trawl Final Report May 2016 Prepared For: Polar Ltd Prepared By: Acoura Marine Ltd. Acoura Marine Final Report South Georgia Icefish Pelagic Trawl Final Report May 2016 Authors: Andy Hough, Jim Andrews, Graham Piling Certification Body: Client: Acoura Marine Polar Ltd Address: Address: 6 Redheughs Rigg 37 Fitzroy Road Edinburgh PO Box 215 EH12 9DQ Stanley Scotland, UK Falkland Islands Name: Fisheries Department Name: Alex Reid Tel: +44(0) 131 335 6601 Tel: +500 22669 Email: [email protected] Email: [email protected] Web: www.Acoura.com version 3.0(24/03/15) Acoura Marine Final Report South Georgia Icefish Pelagic Trawl Contents 1 Executive Summary ....................................................................................................... 6 2 Authorship and Peer Reviewers ..................................................................................... 8 2.1 Assessment Team .................................................................................................. 8 2.2 Peer Reviewers ...................................................................................................... 9 3 Description of the Fishery ............................................................................................ 11 3.1 Unit(s) of Assessment (UoA) and Scope of Certification Sought ........................... 11 3.1.1 UoA and Proposed Unit of Certification (UoC) ............................................... 11 3.1.2 Final UoC(s).................................................................................................. -
Genome Composition Plasticity in Marine Organisms
Genome Composition Plasticity in Marine Organisms A Thesis submitted to University of Naples “Federico II”, Naples, Italy for the degree of DOCTOR OF PHYLOSOPHY in “Applied Biology” XXVIII cycle by Andrea Tarallo March, 2016 1 University of Naples “Federico II”, Naples, Italy Research Doctorate in Applied Biology XXVIII cycle The research activities described in this Thesis were performed at the Department of Biology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, Naples, Italy and at the Fishery Research Laboratory, Kyushu University, Fukuoka, Japan from April 2013 to March 2016. Supervisor Dr. Giuseppe D’Onofrio Tutor Doctoral Coordinator Prof. Claudio Agnisola Prof. Ezio Ricca Candidate Andrea Tarallo Examination pannel Prof. Maria Moreno, Università del Sannio Prof. Roberto De Philippis, Università di Firenze Prof. Mariorosario Masullo, Università degli Studi Parthenope 2 LIST OF PUBLICATIONS 1. On the genome base composition of teleosts: the effect of environment and lifestyle A Tarallo, C Angelini, R Sanges, M Yagi, C Agnisola, G D’Onofrio BMC Genomics 17 (173) 2016 2. Length and GC Content Variability of Introns among Teleostean Genomes in the Light of the Metabolic Rate Hypothesis A Chaurasia, A Tarallo, L Bernà, M Yagi, C Agnisola, G D’Onofrio PloS one 9 (8), e103889 2014 3. The shifting and the transition mode of vertebrate genome evolution in the light of the metabolic rate hypothesis: a review L Bernà, A Chaurasia, A Tarallo, C Agnisola, G D'Onofrio Advances in Zoology Research 5, 65-93 2013 4. An evolutionary acquired functional domain confers neuronal fate specification properties to the Dbx1 transcription factor S Karaz, M Courgeon, H Lepetit, E Bruno, R Pannone, A Tarallo, F Thouzé, P Kerner, M Vervoort, F Causeret, A Pierani and G D’Onofrio EvoDevo, Submitted 5. -
Biodiversity of Arctic Marine Fishes: Taxonomy and Zoogeography
Mar Biodiv DOI 10.1007/s12526-010-0070-z ARCTIC OCEAN DIVERSITY SYNTHESIS Biodiversity of arctic marine fishes: taxonomy and zoogeography Catherine W. Mecklenburg & Peter Rask Møller & Dirk Steinke Received: 3 June 2010 /Revised: 23 September 2010 /Accepted: 1 November 2010 # Senckenberg, Gesellschaft für Naturforschung and Springer 2010 Abstract Taxonomic and distributional information on each Six families in Cottoidei with 72 species and five in fish species found in arctic marine waters is reviewed, and a Zoarcoidei with 55 species account for more than half list of families and species with commentary on distributional (52.5%) the species. This study produced CO1 sequences for records is presented. The list incorporates results from 106 of the 242 species. Sequence variability in the barcode examination of museum collections of arctic marine fishes region permits discrimination of all species. The average dating back to the 1830s. It also incorporates results from sequence variation within species was 0.3% (range 0–3.5%), DNA barcoding, used to complement morphological charac- while the average genetic distance between congeners was ters in evaluating problematic taxa and to assist in identifica- 4.7% (range 3.7–13.3%). The CO1 sequences support tion of specimens collected in recent expeditions. Barcoding taxonomic separation of some species, such as Osmerus results are depicted in a neighbor-joining tree of 880 CO1 dentex and O. mordax and Liparis bathyarcticus and L. (cytochrome c oxidase 1 gene) sequences distributed among gibbus; and synonymy of others, like Myoxocephalus 165 species from the arctic region and adjacent waters, and verrucosus in M. scorpius and Gymnelus knipowitschi in discussed in the family reviews. -
Genetic Diversity of Antarctic Fish
GENETIC DIVERSITY OF ANTARCTIC FISH Elaine M. Fitzcharles A Thesis Submitted for the Degree of PhD at the University of St Andrews 2014 Full metadata for this item is available in Research@StAndrews:FullText at: http://research-repository.st-andrews.ac.uk/ Please use this identifier to cite or link to this item: http://hdl.handle.net/10023/6860 This item is protected by original copyright Genetic Diversity of Antarctic Fish Elaine M. Fitzcharles This thesis is submitted in partial fulfilment for the degree of PhD at the University of St Andrews May 2014 Supervisor of studies Prof. Alex Rogers (University of Oxford) Dr Melody Clark (British Antarctic Survey) Prof. Andrew Brierley (University of St Andrews) Sponsoring establishment British Antarctic Survey Natural Environment Research Council High Cross Madingley Road Cambridge CB3 0ET United Kingdom ii DECLARATIONS 1. Candidate’s declarations: I, Elaine Fitzcharles, hereby certify that this thesis, which is approximately 35000 words in length, has been written by me, and that it is the record of work carried out by me, or principally by myself in collaboration with others as acknowledged, and that it has not been submitted in any previous application for a higher degree. I was admitted as a research student in September 2005 and as a candidate for the degree of Doctor of Philosophy in April 2007; the higher study for which this is a record was carried out in the University of St Andrews between 2005 and 2014. Date 23/5/11 Signature of candidate …………………….............. 2. Supervisor’s declaration: I hereby certify that the candidate has fulfilled the conditions of the Resolution and Regulations appropriate for the degree of Doctor of Philosophy in the University of St Andrews and that the candidate is qualified to submit this thesis in application for that degree. -
Zootaxa 3165: 1–24 (2012) ISSN 1175-5326 (Print Edition) Article ZOOTAXA Copyright © 2012 · Magnolia Press ISSN 1175-5334 (Online Edition)
Zootaxa 3165: 1–24 (2012) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2012 · Magnolia Press ISSN 1175-5334 (online edition) A new species of grenadier, genus Macrourus (Teleostei, Gadiformes, Macrouridae) from the southern hemisphere and a revision of the genus PETER MCMILLAN1, TOMIO IWAMOTO2, ANDREW STEWART3 & PETER J SMITH4 1National Institute of Water and Atmospheric Research Ltd, Private Bag 14901, Wellington, 6241, New Zealand. E-mail: [email protected] 2Department of Ichthyology, California Academy of Sciences, 55 Concourse Drive, San Francisco, CA 94118, USA. E-mail: [email protected] 3Museum of New Zealand Te Papa Tongarewa, P.O. Box 467, Wellington, New Zealand 4Museum Victoria, GPO Box 666, Melbourne, Victoria 3001, Australia Abstract A new Macrourus species from the southern hemisphere is described. It was first recognised from the Ross Sea, Antarctica after specimens sampled during the International Polar Year in 2008 showed significant genetic differences (C01) among those initially identified as M. whitsoni (Regan). M. caml sp. nov. has 8 (rarely 7 or 9) pelvic fin rays, a band (2–3 rows) of small uniform-sized teeth in the lower jaw, lacks an outer row of enlarged teeth in the upper jaw, 30–40 scales in a di- agonal row from anal fin origin to lateral line, ventral surface of the head is mostly scaled, except for scaleless areas an- terior to the mouth and on the anterior half of the lower jaw. M caml sp. nov. is large, reaching at least 890 mm TL and appears to be abundant. Numerous specimens caught by commercial bottom longline vessels fishing in the Ross Sea are held at Museum of New Zealand Te Papa Tongarewa, Wellington New Zealand. -
Themisto Amphipods in High-Latitude Marine Pelagic Food Webs
1 Predatory zooplankton on the move: 2 Themisto amphipods in high-latitude marine pelagic food webs 3 4 Charlotte Havermans*1, 2, Holger Auel1, Wilhelm Hagen1, Christoph Held2, Natalie Ensor3, Geraint Tarling3 5 1 Universität Bremen, BreMarE - Bremen Marine Ecology, Marine Zoology, 6 PO Box 330 440, 28334 Bremen, Germany 7 2 Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung, 8 Am Handelshafen 12, 27568 Bremerhaven, Germany 9 3 Natural Environment Research Council, 10 High Cross Madingley Road, Cambridge, CB3 0ET, United Kingdom 11 12 *corresponding author 13 E-mail: [email protected] 14 Tel: +49 421 218 63037 15 ORCID ID: 0000-0002-1126-4074 16 https://doi.org/10.1016/bs.amb.2019.02.002 17 ABSTRACT 18 Hyperiid amphipods are predatory pelagic crustaceans that are particularly prevalent in high-latitude 19 oceans. Many species are likely to have co-evolved with soft-bodied zooplankton groups such as salps 20 and medusae, using them as substrate, for food, shelter or reproduction. Compared to other pelagic 21 groups, such as fish, euphausiids and soft-bodied zooplankton, hyperiid amphipods are poorly studied 22 especially in terms of their distribution and ecology. Hyperiids of the genus Themisto, comprising seven 23 distinct species, are key players in temperate and cold-water pelagic ecosystems where they reach 24 enormous levels of biomass. In these areas, they are important components of marine food webs, and 25 they are major prey for many commercially important fish and squid stocks. In northern parts of the 26 Southern Ocean, Themisto are so prevalent that they are considered to take on the role that Antarctic 1 27 krill play further south. -
DNA Barcoding Highlights a Cryptic Species of Grenadier Macrourus in the Southern Ocean
Journal of Fish Biology (2010) doi:10.1111/j.1095-8649.2010.02846.x, available online at wileyonlinelibrary.com BRIEF COMMUNICATION DNA barcoding highlights a cryptic species of grenadier Macrourus in the Southern Ocean P. J. Smith*† ,D.Steinke‡,P.J.McMillan*,A.L.Stewart§, S. M. McVeagh*, J. M. Diaz de Astarloa, D. Welsford¶ and R. D. Ward** *National Institute of Water & Atmospheric Research Ltd, Private Bag 14 901, Wellington, New Zealand, ‡Canadian Centre for DNA Barcoding, Biodiversity Institute of Ontario, University of Guelph, 50 Stone Road East, Guelph, Ontario, N1G 2W1 Canada, §Museum of New Zealand Te Papa Tongarewa, P.O. Box 467, Wellington, New Zealand, Departamento de Ciencias Marinas, Universidad Nacional de Mar del Plata, and Consejo Nacional de Investigaciones Científicas y T´ecnicas (CONICET), Funes 3350, B7602AYL, Argentina, ¶Australian Antarctic Division, 203 Channel Highway, Kingston, Tasmania 7050, Australia and **Wealth from Oceans Flagship, CSIRO Marine and Atmospheric Research, GPO Box 1538, Hobart, Tasmania 7001, Australia (Received 12 May 2010, Accepted 20 October 2010) Although three species of the genus Macrourus are recognized in the Southern Ocean, DNA sequenc- ing of the mitochondrial COI gene revealed four well-supported clades. These barcode data suggest the presence of an undescribed species, a conclusion supported by meristic and morphometric examination of specimens. © 2010 NIWA Journal of Fish Biology © 2010 The Fisheries Society of the British Isles Key words: Antarctic fisheries; COI; mitochondrial DNA; species identification. The grenadiers or rattails (family Macrouridae) are a large family of >300 species of mostly bentho-pelagic predators and scavengers, found in all oceans from the upper continental slope down to the abyssal depths (Cohen et al., 1990; Froese & Pauly, 2006; Iwamoto & McMillan, 2008). -
Ward, A.B. and E. L. Brainerd. 2007. Evolution of Axial Patterning In
Blackwell Publishing LtdOxford, UKBIJBiological Journal of the Linnean Society0024-4066© 2006 The Linnean Society of London? 2006 90? 97116 Original Article AXIAL PATTERNING IN FISHES A. B. WARD and E. L. BRAINERD Biological Journal of the Linnean Society, 2007, 90, 97–116. With 9 figures Evolution of axial patterning in elongate fishes ANDREA B. WARD* and ELIZABETH L. BRAINERD† Biology Department and Organismic and Evolutionary Biology Program, University of Massachusetts, Amherst MA 01003, USA Received 7 July 2005; accepted for publication 1 March 2006 Within the ray-finned fishes, eel-like (extremely elongate) body forms have evolved multiple times from deeper-bod- ied forms. Previous studies have shown that elongation of the vertebral column may be associated with an increase in the number of vertebrae, an increase in the length of the vertebral centra, or a combination of both. Because the vertebral column of fishes has at least two anatomically distinct regions (i.e. abdominal and caudal), an increase in the number and relative length of the vertebrae could be region-specific or occur globally across the length of the ver- tebral column. In the present study, we recorded vertebral counts and measurements of vertebral aspect ratio (ver- tebral length/width) from museum specimens for 54 species representing seven groups of actinopterygian fishes. We also collected, from published literature, vertebral counts for 813 species from 14 orders of actinopterygian and elas- mobranch fishes. We found that the number of vertebrae can increase independently in the abdominal and caudal regions of the vertebral column, but changes in aspect ratio occur similarly in both regions. -
Dottorato Di Ricerca in Biochimica E Biologia Cellulare E Molecolare
UNIVERSITA’ DEGLI STUDI DI NAPOLI FEDERICO II DOTTORATO DI RICERCA IN BIOCHIMICA E BIOLOGIA CELLULARE E MOLECOLARE TESI DI DOTTORATO, 2006 GENOMA E AMBIENTE: TEMPERATURA E METILAZIONE DOTTORANDA: ANNALISA VARRIALE LABORATORIO DI EVOLUZIONE MOLECOLARE STAZIONE ZOOLOGICA ANTON DOHRN RELATORE: Prof. GIUSEPPE GERACI CORRELATORE: Prof. GIORGIO BERNARDI COORDINATORE: Prof. GIUSEPPE D’ALESSIO INDICE pagina SOMMARIO i ABSTRACT ii 1-INTRODUZIONE 1 1.1 -I pesci 7 1.2 -I rettili 8 1.6 -Ambiente e termostabilità dell’RNA ribosomale (rRNA) 18S 9 2-MATERIALI E METODI 12 2.1 DNA e campioni di tessuto biologico 12 2.2 Estrazione del DNA genomico e analisi per ultracentrifugazione 12 2.3 Idrolisi enzimatica del DNA 12 2.4 Analisi con RP-HPLC 13 2.5 Analisi dei geni ortologhi 14 2.6 Analisi delle sequenze di RNA ribosomale 18S in vertebrati 15 3-RISULTATI 16 3.1.1 Analisi del livello di metilazione in pesci 16 3.1.2 Analisi del livello di metilazione nei rettili 22 I 3.1.3 Analisi del livello di metilazione nei mammiferi 25 3.2 Correlazione del livello di metilazione con la lunghezza del genoma 28 3.3 Livello di CpG in geni ortologhi 29 3.4 Correlazione del livello di metilazione con tassonomia e filogenia 32 3.5 Correlazione tra livello di metilazione e temperatura corporea 32 3.6 Correlazione tra livello di GC derivante dall’analisi dei nucleosidi e dalla centrifugazione in gradiente di densità di cloruro di cesio (CsCl) 33 3.7 Analisi dell’RNA ribosomale 18S endotermi ed endotermi 35 4.DISCUSSIONE 37 5.CONCLUSIONE 41 3-RINGRAZIAMENTI 42 3-BIBLIOGRAFIA 43 II Sommario La temperatura è un fattore ambientale che influenza la vita degli organismi. -
Evolution of Antarctic Fauna Extended Abstracts of the IBMANTIANDEEP International Symposium and Workshop in 2003
Evolution of Antarctic Fauna Extended Abstracts of the IBMANTIANDEEP International Symposium and Workshop in 2003 Edited by Sven Thatje, Javier AmCalcagno and Wolf E. Arntz Ber. Polarforsch. Meeresforsch. 507 (2005) ISSN 1618 - 3193 I BMANT lnt eractions between the and the Antarc tic tarctic Benthic Deep-Sea EXTENDED ABSTRACTS Edited by Sven Thatje Javier A. Calcagno And Wolf E. Arntz 1 9 to 24 October 2003 - Ushuaia, Argentina Extended abstracts of the IBMANTIANDEEP 2W3 Organizing Committee Steering Committee Wolf E. Arntz (AWI, Germany) Angelika Brandt (Zoological Institute, Hamburg University, Germany) Gustavo. A. Lovrich (CADIC, Argentina) Members Javier Calcagno (UBAl Argentina) Claude De Broyer (Institut Royal des Sciences Naturellesl Belgium) Jorge Calvo (CADICl Argentina) Elba Moriconi (CADICl Argentina) Adrian Schiavini (CADICl Argentina) Federico Tapella (CADICl Argentina) Sven Thatje (AWll Germany) Secretaries Andrea Bleyer (AWll Germany) Silvia Gigli (CADICl Argentina) Local assistance Daniel Aureliano (CADICl Argentina) Claudia Boy (CADICl Argentina) Marcelo Gutierrez (CADICl Argentina) Gabriela Malanga (CADICl Argentina) Patricia Perez-Barros (CADICl Argentina) Andrea Raya-Rey (CADICl Argentina) Carolina Romero (CADIC, Argentina) Fabian Vanella (CADICl Argentina) T Extended abstracts of the IBMANTIANDEEP 2003 CONTENT lntroduction to the IBMANTIANDEEP Symposium & Workshop Arntz, W.E., Lovrich, G. & Brandt, A. KEYNOTE PRESENTATIONS Arntz, W.E. The Antarctic-Magellan connection: Macrobenthic studies On the shelf and upper slope, a Progress report 4 Barnes, D.K.A. Changing chain: Past, present and predicted trends in Scotia Arc shallow benthic communities 5 Berkman, P.A., Cattaneo-Vietti, U., Chiantore, M. & Howard-Williams, C. lnterdisciplinary perspectives of ecosystem variability across the latitudinal gradient of Victoria Land, Antarctica 7 Boltovskoy, D. -
The Role of Fish As Predators of Krill (Euphausia Superba) and Other Pelagic Resources in the Southern Ocean
CCAMLR Science, Vol. 19 (2012): 115–169 THE ROLE OF FISH AS PREDATORS OF KRILL (EUPHAUSIA SUPERBA) AND OTHER PELAGIC RESOURCES IN THE SOUTHERN OCEAN K.-H. Kock* Institut für Seefischerei Johann Heinrich von Thünen Institut Palmaille 9 D-22767 Hamburg Germany Email – [email protected] E. Barrera-Oro Dirección Nacional del Antártico Ministerio de Relaciones Exteriores, Comercio Internacional y Culto Buenos Aires Argentina M. Belchier British Antarctic Survey High Cross, Madingley Road Cambridge CB3 0ET United Kingdom M.A. Collins Director of Fisheries/Senior Executive Government of South Georgia and South Sandwich Islands Government House Stanley Falkland Islands G. Duhamel Museum National D’Histoire Naturelle 43 rue Cuvier F-75231 Paris Cedex 05 France S. Hanchet National Institute of Water and Atmospheric Research (NIWA) Ltd PO Box 893 Nelson New Zealand L. Pshenichnov YugNIRO 2 Sverdlov Street 98300 Kerch Ukraine D. Welsford and R. Williams Australian Antarctic Division Department of Sustainability, Environment, Water, Population and Communities 203 Channel Highway Kingston, Tasmania 7050 Australia 115 Kock et al. Abstract Krill forms an important part of the diet of many Antarctic fish species. An understanding of the role of fish as krill predators in the Southern Ocean is critical to understanding how changes in fish abundance, such as through fishing or environmental change, are likely to impact on the food webs in the region. First attempts to estimate the krill and pelagic food consumption by Antarctic demersal fish in the low Antarctic were made in the late 1970s/ early 1980s. Those estimates were constrained by a paucity of biomass estimates and the mostly qualitative nature of food studies.