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ART/SMSG/SAERI Expedition Report: Hummock Island February 2021
ART/SMSG/SAERI Expedition Report: Hummock Island February 2021 Significance of peat dust and terrestrial erosion for marine communities around Hummock Island Amy Guest, Dr Paul Brewin, Dr Paul Brickle, Dr Karen von Juterzenka, and Dr Klemens Pütz Cosmasterias lurida (beaded starfish) and Munida gregaria (lobster krill) on a peat covered sandy substrate, Hummock Island February 2021 ART/SMSG/SAERI expedition report: Hummock Island, February 2021 Logistics Expedition dates: 4 - 14th Feb 2021 (for Daily Log see Appendix 1; Dive log see Appendix 2) Vessels: SMSG Fram (5.8 m RHIB), launched from Roy Cove; Sailing Yacht Porvenir II. Accommodation: Roy Cove self-catering, ART House Hummock Island Participants: Dr Paul Brickle (Co-PI) Dr Paul Brewin (Co-PI) Steve Cartwright (Dive Officer / Coxswain) Joost Pompert (Scientist / Surveyor) Sacha Cleminson (Scientist / Surveyor) 4th – 8th February, N.B. flew out from Fox Bay. Amy Guest (PhD Student / Surveyor / Logistics) Sally Poncet (Antarctic Research Trust) Ken Passfield (Antarctic Research Trust) Background Hummock Island lies to the west of West Falkland (Figure 1). Like on other islands in the Falklands, Hummock Island´s rocky surface is covered by peat soil. Decades of grazing on the island has led to de- vegetation of about one third of the 303 ha and subsequent substantial erosion. Large areas were replaced by black ground indicating the extension and distribution of exposed peat soil. The Antarctic Research Trust (ART) is currently re-vegetating the island by tussac planting campaigns. Tussac roots and above ground blade structures will stabilise the peat soil and, moreover, will prove very efficient in storage of atmospheric carbon. -
South Georgia Icefish Pelagic Trawl
MSC SUSTAINABLE FISHERIES CERTIFICATION South Georgia Icefish Pelagic Trawl Final Report May 2016 Prepared For: Polar Ltd Prepared By: Acoura Marine Ltd. Acoura Marine Final Report South Georgia Icefish Pelagic Trawl Final Report May 2016 Authors: Andy Hough, Jim Andrews, Graham Piling Certification Body: Client: Acoura Marine Polar Ltd Address: Address: 6 Redheughs Rigg 37 Fitzroy Road Edinburgh PO Box 215 EH12 9DQ Stanley Scotland, UK Falkland Islands Name: Fisheries Department Name: Alex Reid Tel: +44(0) 131 335 6601 Tel: +500 22669 Email: [email protected] Email: [email protected] Web: www.Acoura.com version 3.0(24/03/15) Acoura Marine Final Report South Georgia Icefish Pelagic Trawl Contents 1 Executive Summary ....................................................................................................... 6 2 Authorship and Peer Reviewers ..................................................................................... 8 2.1 Assessment Team .................................................................................................. 8 2.2 Peer Reviewers ...................................................................................................... 9 3 Description of the Fishery ............................................................................................ 11 3.1 Unit(s) of Assessment (UoA) and Scope of Certification Sought ........................... 11 3.1.1 UoA and Proposed Unit of Certification (UoC) ............................................... 11 3.1.2 Final UoC(s).................................................................................................. -
Genome Composition Plasticity in Marine Organisms
Genome Composition Plasticity in Marine Organisms A Thesis submitted to University of Naples “Federico II”, Naples, Italy for the degree of DOCTOR OF PHYLOSOPHY in “Applied Biology” XXVIII cycle by Andrea Tarallo March, 2016 1 University of Naples “Federico II”, Naples, Italy Research Doctorate in Applied Biology XXVIII cycle The research activities described in this Thesis were performed at the Department of Biology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, Naples, Italy and at the Fishery Research Laboratory, Kyushu University, Fukuoka, Japan from April 2013 to March 2016. Supervisor Dr. Giuseppe D’Onofrio Tutor Doctoral Coordinator Prof. Claudio Agnisola Prof. Ezio Ricca Candidate Andrea Tarallo Examination pannel Prof. Maria Moreno, Università del Sannio Prof. Roberto De Philippis, Università di Firenze Prof. Mariorosario Masullo, Università degli Studi Parthenope 2 LIST OF PUBLICATIONS 1. On the genome base composition of teleosts: the effect of environment and lifestyle A Tarallo, C Angelini, R Sanges, M Yagi, C Agnisola, G D’Onofrio BMC Genomics 17 (173) 2016 2. Length and GC Content Variability of Introns among Teleostean Genomes in the Light of the Metabolic Rate Hypothesis A Chaurasia, A Tarallo, L Bernà, M Yagi, C Agnisola, G D’Onofrio PloS one 9 (8), e103889 2014 3. The shifting and the transition mode of vertebrate genome evolution in the light of the metabolic rate hypothesis: a review L Bernà, A Chaurasia, A Tarallo, C Agnisola, G D'Onofrio Advances in Zoology Research 5, 65-93 2013 4. An evolutionary acquired functional domain confers neuronal fate specification properties to the Dbx1 transcription factor S Karaz, M Courgeon, H Lepetit, E Bruno, R Pannone, A Tarallo, F Thouzé, P Kerner, M Vervoort, F Causeret, A Pierani and G D’Onofrio EvoDevo, Submitted 5. -
Themisto Amphipods in High-Latitude Marine Pelagic Food Webs
1 Predatory zooplankton on the move: 2 Themisto amphipods in high-latitude marine pelagic food webs 3 4 Charlotte Havermans*1, 2, Holger Auel1, Wilhelm Hagen1, Christoph Held2, Natalie Ensor3, Geraint Tarling3 5 1 Universität Bremen, BreMarE - Bremen Marine Ecology, Marine Zoology, 6 PO Box 330 440, 28334 Bremen, Germany 7 2 Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung, 8 Am Handelshafen 12, 27568 Bremerhaven, Germany 9 3 Natural Environment Research Council, 10 High Cross Madingley Road, Cambridge, CB3 0ET, United Kingdom 11 12 *corresponding author 13 E-mail: [email protected] 14 Tel: +49 421 218 63037 15 ORCID ID: 0000-0002-1126-4074 16 https://doi.org/10.1016/bs.amb.2019.02.002 17 ABSTRACT 18 Hyperiid amphipods are predatory pelagic crustaceans that are particularly prevalent in high-latitude 19 oceans. Many species are likely to have co-evolved with soft-bodied zooplankton groups such as salps 20 and medusae, using them as substrate, for food, shelter or reproduction. Compared to other pelagic 21 groups, such as fish, euphausiids and soft-bodied zooplankton, hyperiid amphipods are poorly studied 22 especially in terms of their distribution and ecology. Hyperiids of the genus Themisto, comprising seven 23 distinct species, are key players in temperate and cold-water pelagic ecosystems where they reach 24 enormous levels of biomass. In these areas, they are important components of marine food webs, and 25 they are major prey for many commercially important fish and squid stocks. In northern parts of the 26 Southern Ocean, Themisto are so prevalent that they are considered to take on the role that Antarctic 1 27 krill play further south. -
Dottorato Di Ricerca in Biochimica E Biologia Cellulare E Molecolare
UNIVERSITA’ DEGLI STUDI DI NAPOLI FEDERICO II DOTTORATO DI RICERCA IN BIOCHIMICA E BIOLOGIA CELLULARE E MOLECOLARE TESI DI DOTTORATO, 2006 GENOMA E AMBIENTE: TEMPERATURA E METILAZIONE DOTTORANDA: ANNALISA VARRIALE LABORATORIO DI EVOLUZIONE MOLECOLARE STAZIONE ZOOLOGICA ANTON DOHRN RELATORE: Prof. GIUSEPPE GERACI CORRELATORE: Prof. GIORGIO BERNARDI COORDINATORE: Prof. GIUSEPPE D’ALESSIO INDICE pagina SOMMARIO i ABSTRACT ii 1-INTRODUZIONE 1 1.1 -I pesci 7 1.2 -I rettili 8 1.6 -Ambiente e termostabilità dell’RNA ribosomale (rRNA) 18S 9 2-MATERIALI E METODI 12 2.1 DNA e campioni di tessuto biologico 12 2.2 Estrazione del DNA genomico e analisi per ultracentrifugazione 12 2.3 Idrolisi enzimatica del DNA 12 2.4 Analisi con RP-HPLC 13 2.5 Analisi dei geni ortologhi 14 2.6 Analisi delle sequenze di RNA ribosomale 18S in vertebrati 15 3-RISULTATI 16 3.1.1 Analisi del livello di metilazione in pesci 16 3.1.2 Analisi del livello di metilazione nei rettili 22 I 3.1.3 Analisi del livello di metilazione nei mammiferi 25 3.2 Correlazione del livello di metilazione con la lunghezza del genoma 28 3.3 Livello di CpG in geni ortologhi 29 3.4 Correlazione del livello di metilazione con tassonomia e filogenia 32 3.5 Correlazione tra livello di metilazione e temperatura corporea 32 3.6 Correlazione tra livello di GC derivante dall’analisi dei nucleosidi e dalla centrifugazione in gradiente di densità di cloruro di cesio (CsCl) 33 3.7 Analisi dell’RNA ribosomale 18S endotermi ed endotermi 35 4.DISCUSSIONE 37 5.CONCLUSIONE 41 3-RINGRAZIAMENTI 42 3-BIBLIOGRAFIA 43 II Sommario La temperatura è un fattore ambientale che influenza la vita degli organismi. -
Evolution of Antarctic Fauna Extended Abstracts of the IBMANTIANDEEP International Symposium and Workshop in 2003
Evolution of Antarctic Fauna Extended Abstracts of the IBMANTIANDEEP International Symposium and Workshop in 2003 Edited by Sven Thatje, Javier AmCalcagno and Wolf E. Arntz Ber. Polarforsch. Meeresforsch. 507 (2005) ISSN 1618 - 3193 I BMANT lnt eractions between the and the Antarc tic tarctic Benthic Deep-Sea EXTENDED ABSTRACTS Edited by Sven Thatje Javier A. Calcagno And Wolf E. Arntz 1 9 to 24 October 2003 - Ushuaia, Argentina Extended abstracts of the IBMANTIANDEEP 2W3 Organizing Committee Steering Committee Wolf E. Arntz (AWI, Germany) Angelika Brandt (Zoological Institute, Hamburg University, Germany) Gustavo. A. Lovrich (CADIC, Argentina) Members Javier Calcagno (UBAl Argentina) Claude De Broyer (Institut Royal des Sciences Naturellesl Belgium) Jorge Calvo (CADICl Argentina) Elba Moriconi (CADICl Argentina) Adrian Schiavini (CADICl Argentina) Federico Tapella (CADICl Argentina) Sven Thatje (AWll Germany) Secretaries Andrea Bleyer (AWll Germany) Silvia Gigli (CADICl Argentina) Local assistance Daniel Aureliano (CADICl Argentina) Claudia Boy (CADICl Argentina) Marcelo Gutierrez (CADICl Argentina) Gabriela Malanga (CADICl Argentina) Patricia Perez-Barros (CADICl Argentina) Andrea Raya-Rey (CADICl Argentina) Carolina Romero (CADIC, Argentina) Fabian Vanella (CADICl Argentina) T Extended abstracts of the IBMANTIANDEEP 2003 CONTENT lntroduction to the IBMANTIANDEEP Symposium & Workshop Arntz, W.E., Lovrich, G. & Brandt, A. KEYNOTE PRESENTATIONS Arntz, W.E. The Antarctic-Magellan connection: Macrobenthic studies On the shelf and upper slope, a Progress report 4 Barnes, D.K.A. Changing chain: Past, present and predicted trends in Scotia Arc shallow benthic communities 5 Berkman, P.A., Cattaneo-Vietti, U., Chiantore, M. & Howard-Williams, C. lnterdisciplinary perspectives of ecosystem variability across the latitudinal gradient of Victoria Land, Antarctica 7 Boltovskoy, D. -
The Role of Fish As Predators of Krill (Euphausia Superba) and Other Pelagic Resources in the Southern Ocean
CCAMLR Science, Vol. 19 (2012): 115–169 THE ROLE OF FISH AS PREDATORS OF KRILL (EUPHAUSIA SUPERBA) AND OTHER PELAGIC RESOURCES IN THE SOUTHERN OCEAN K.-H. Kock* Institut für Seefischerei Johann Heinrich von Thünen Institut Palmaille 9 D-22767 Hamburg Germany Email – [email protected] E. Barrera-Oro Dirección Nacional del Antártico Ministerio de Relaciones Exteriores, Comercio Internacional y Culto Buenos Aires Argentina M. Belchier British Antarctic Survey High Cross, Madingley Road Cambridge CB3 0ET United Kingdom M.A. Collins Director of Fisheries/Senior Executive Government of South Georgia and South Sandwich Islands Government House Stanley Falkland Islands G. Duhamel Museum National D’Histoire Naturelle 43 rue Cuvier F-75231 Paris Cedex 05 France S. Hanchet National Institute of Water and Atmospheric Research (NIWA) Ltd PO Box 893 Nelson New Zealand L. Pshenichnov YugNIRO 2 Sverdlov Street 98300 Kerch Ukraine D. Welsford and R. Williams Australian Antarctic Division Department of Sustainability, Environment, Water, Population and Communities 203 Channel Highway Kingston, Tasmania 7050 Australia 115 Kock et al. Abstract Krill forms an important part of the diet of many Antarctic fish species. An understanding of the role of fish as krill predators in the Southern Ocean is critical to understanding how changes in fish abundance, such as through fishing or environmental change, are likely to impact on the food webs in the region. First attempts to estimate the krill and pelagic food consumption by Antarctic demersal fish in the low Antarctic were made in the late 1970s/ early 1980s. Those estimates were constrained by a paucity of biomass estimates and the mostly qualitative nature of food studies. -
03Marriott Et Al for Pdf.Indd
CCAMLR Science, Vol. 10 (2003): 37–51 SPECIES IDENTIFICATION AND AGE ESTIMATION FOR THE RIDGE-SCALED MACROURID (MACROURUS WHITSONI) FROM THE ROSS SEA P. Marriott National Institute of Water and Atmospheric Research (NIWA) Ltd Private Bag 14-901, Kilbirnie Wellington, New Zealand Email – [email protected] P.L. Horn NIWA Ltd PO Box 893, Nelson New Zealand P. McMillan NIWA Ltd Private Bag 14-901 Kilbirnie, Wellington New Zealand Abstract Samples of macrourid rattail by-catch from the toothfi sh fi shery in the Ross Sea dependency in 2002 were identifi ed by observers and returned to New Zealand for subsequent confi rmation of their identity by researchers from the National Institute of Water and Atmospheric Research (NIWA). Two species were found, Macrourus whitsoni and M. holotrachys. A previously aged sample from 1999 was confi rmed as being solely M. whitsoni, based on otolith comparisons and the geographic source of the aged sample. Counts of translucent zones were made from baked and cross-sectioned otoliths of the ridge-scaled macrourid (M. whitsoni) sampled from the commercial longline fi shery in the Ross Sea (CCAMLR Subarea 88.1). The zones are assumed to form annually as this ageing methodology has yet to be validated for this species. Von Bertalanffy growth parameters were calculated from the readings, separately by sex. M. whitsoni appears to be a slow- growing and long-lived species, living to at least 50 years. Females grow at a faster rate, and reach a larger size, than males, but both sexes exhibit comparable maximum ages. Regression relationships were calculated, by sex, between total and snout–vent lengths, snout–vent length and weight, and total length and weight. -
Trophic-Based Analyses of the Scotia Sea Ecosystem with an Examination of the Effects of Some Data Limitations and Uncertainties
Trophic-based analyses of the Scotia Sea ecosystem with an examination of the effects of some data limitations and uncertainties Sarah Collings Doctor of Philosophy University of York Biology September 2015 Abstract The Scotia Sea is a sub-region of the Southern Ocean with a unique biological operation, including high rates of primary production, high abundances of Antarctic krill, and a diverse community of land-breeding predators. Trophic interactions link all species in an ecosystem into a network known as the food web. Theoretical analyses of trophic food webs, which are parameterised using diet composition data, offer useful tools to explore food web structure and operation. However, limitations in diet data can cause uncertainty in subsequent food web analyses. Therefore, this thesis had two aims: (i) to provide ecological insight into the Scotia Sea food web using theoretical analyses; and (ii) to identify, explore and ameliorate for the effects of some data limitations on these analyses. Therefore, in Chapter 2, I collated a set of diet composition data for consumers in the Scotia Sea, and highlighted its strengths and limitations. In Chapters 3 and 4, I constructed food web analyses to draw ecological insight into the Scotia Sea food web. I indicated the robustness of these conclusions to some of the assumptions I used to construct them. Finally, in Chapter 5, I constructed a probabilistic model of a penguin encountering prey to investigate changes in trophic interactions caused by the spatial and temporal variability of their prey. I show that natural variabilities, such as the spatial aggregation of prey into swarms, can explain observed foraging outcomes for this predator. -
Distribution and Diet of Juvenile Patagonian Toothfish on the South Georgia and Shag Rocks Shelves (Southern Ocean)
1 Distribution and diet of juvenile Patagonian toothfish on the 2 South Georgia and Shag Rocks shelves (Southern Ocean) 3 4 Martin A. Collins, Katherine A. Ross, Mark Belchier, Keith Reid 5 6 British Antarctic Survey, Natural Environment Research Council, High Cross, 7 Madingley Road, Cambridge, CB3 0ET, UK. 8 Tel: 01223 221563 9 E-mail: [email protected] 10 11 Abstract The distribution and diet of juvenile (<750 mm) Patagonian toothfish are 12 described from 4 annual trawl surveys (2003-06) around the island of South Georgia 13 in the Atlantic sector of the Southern Ocean. Recruitment of toothfish varies inter- 14 annually, and a single large cohort dominated during the four years surveyed. Most 15 juveniles were caught on the Shag Rocks shelf to the NW of South Georgia, with fish 16 subsequently dispersing to deeper water around both the South Georgia and Shag 17 Rocks shelves. Mean size of juvenile toothfish increased with depth of capture. 18 Stomach contents analysis was conducted on 795 fish that contained food remains and 19 revealed that juvenile toothfish are essentially piscivorous, with the diet dominated by 20 notothenid fish. The yellow-finned notothen, Patagonotothen guntheri, was the 21 dominant prey at Shag Rocks whilst at South Georgia, where P. guntheri is absent, the 22 dominant prey were Antarctic krill and notothenid fish. The diet changed with size, 23 with an increase in myctophid fish and krill as toothfish grow and disperse. The size 24 of prey also increased with fish size, with a greater range of prey sizes consumed by 25 larger fish. -
Myctophids of Western Indian Ocean with Special Reference to Eastern Arabian Sea
Myctophids of Western Indian Ocean with special reference to Eastern Arabian Sea Thesis submitted to Cochin University of Science and Technology in partial fulfillment for the award of the Degree of DOCTOR OF PHILOSOPHY Under the faculty of MARINE SCIENCES By MEERA K.M Reg. No. 4324 Centre for Marine Living Resources and Ecology Ministry of Earth Sciences Kochi - 682037 March 2018 Myctophids of Western Indian Ocean with Special Reference to Eastern Arabian Sea Ph. D. Thesis in Marine Sciences Author Meera K.M Centre for Marine Living Resources & Ecology Ministry of Earth Sciences, Government of India Block C, 6th Floor, Kendriya Bhavan, Kakkanad Kochi 682037, Kerala, India e-mail: [email protected] Supervising Guide Dr. V. N. Sanjeevan Former Director Centre for Marine Living Resources & Ecology Ministry of Earth Sciences, Government of India th Block C, 6 Floor, Kendriya Bhavan, Kakkanad Kochi 682037, Kerala, India Email: [email protected] March, 2018 Front Cover A Headlight Fish (Diaphus sp.) CERTIFICATE This is to certify that the thesis entitled “Myctophids of Western Indian Ocean with special reference to Eastern Arabian Sea” is an authentic record of the research work carried out by Ms. Meera K.M. (Reg. No.: 4324), under my scientific supervision and guidance at the Centre for Marine Living Resources & Ecology (CMLRE), Kochi, in partial fulfilment of the requirements for award of the degree of Doctor of Philosophy of the Cochin University of Science & Technology and that no part thereof has been presented before for the award of any other degree, diploma or associateship in any University. Further certified that all relevant corrections and modifications suggested during the pre-synopsis seminar and recommended by the Doctoral Committee have been incorporated in the thesis. -
Diversity and Disparity Through Time in the Adaptive Radiation of Antarctic Notothenioid Fishes
doi: 10.1111/jeb.12570 Diversity and disparity through time in the adaptive radiation of Antarctic notothenioid fishes M. COLOMBO*, M. DAMERAU†,R.HANEL†,W.SALZBURGER*‡ & M. MATSCHINER*‡ *Zoological Institute, University of Basel, Basel, Switzerland †Thunen€ Institute of Fisheries Ecology, Hamburg, Germany ‡Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway Keywords: Abstract adaptive radiation; According to theory, adaptive radiation is triggered by ecological opportunity early burst; that can arise through the colonization of new habitats, the extinction of geometric morphometrics; antagonists or the origin of key innovations. In the course of an adaptive incomplete lineage sorting; radiation, diversification and morphological evolution are expected to slow species tree. down after an initial phase of rapid adaptation to vacant ecological niches, followed by speciation. Such ‘early bursts’ of diversification are thought to occur because niche space becomes increasingly filled over time. The diver- sification of Antarctic notothenioid fishes into over 120 species has become one of the prime examples of adaptive radiation in the marine realm and has likely been triggered by an evolutionary key innovation in the form of the emergence of antifreeze glycoproteins. Here, we test, using a novel time-calibrated phylogeny of 49 species and five traits that characterize not- othenioid body size and shape as well as buoyancy adaptations and habitat preferences, whether the notothenioid adaptive radiation is compatible with an early burst scenario. Extensive Bayesian model comparison shows that phylogenetic age estimates are highly dependent on model choice and that models with unlinked gene trees are generally better supported and result in younger age estimates.