ART/SMSG/SAERI Expedition Report: Hummock Island February 2021
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South Georgia Icefish Pelagic Trawl
MSC SUSTAINABLE FISHERIES CERTIFICATION South Georgia Icefish Pelagic Trawl Final Report May 2016 Prepared For: Polar Ltd Prepared By: Acoura Marine Ltd. Acoura Marine Final Report South Georgia Icefish Pelagic Trawl Final Report May 2016 Authors: Andy Hough, Jim Andrews, Graham Piling Certification Body: Client: Acoura Marine Polar Ltd Address: Address: 6 Redheughs Rigg 37 Fitzroy Road Edinburgh PO Box 215 EH12 9DQ Stanley Scotland, UK Falkland Islands Name: Fisheries Department Name: Alex Reid Tel: +44(0) 131 335 6601 Tel: +500 22669 Email: [email protected] Email: [email protected] Web: www.Acoura.com version 3.0(24/03/15) Acoura Marine Final Report South Georgia Icefish Pelagic Trawl Contents 1 Executive Summary ....................................................................................................... 6 2 Authorship and Peer Reviewers ..................................................................................... 8 2.1 Assessment Team .................................................................................................. 8 2.2 Peer Reviewers ...................................................................................................... 9 3 Description of the Fishery ............................................................................................ 11 3.1 Unit(s) of Assessment (UoA) and Scope of Certification Sought ........................... 11 3.1.1 UoA and Proposed Unit of Certification (UoC) ............................................... 11 3.1.2 Final UoC(s).................................................................................................. -
A Review of the Abundance and Distribution of Striated Caracaras Phalcoboenus Australis on the Falkland Islands Micky Reeves &Am
A review of the abundance and distribution of Striated Caracaras Phalcoboenus australis on the Falkland Islands Aniket Sardana Micky Reeves & Sarah Crofts Falklands Conservation, May 2015 The authors dedicate this report to Mr. Ian Strange and Mr. Robin Woods whose earlier surveys laid much ground work. This work was funded by: Falklands Conservation is a company limited by guarantee in England & Wales #3661322 and Registered Charity #1073859. Registered as an Overseas Company in the Falkland Islands. Roy Smith “These birds, generally known among sealers by the name of “Johnny” rook, partake of the form and nature of the hawk and crow… Their claws are armed with large and strong talons, like those of an eagle; they are exceedingly bold and the most mischievous of all the feathered creation. The sailors who visit these islands, being often much vexed at their predatory tricks, have bestowed different names upon them, characteristic of their nature, as flying monkeys, flying devils….” Charles Bernard 1812‐13 “A tameness or lack of wariness is an example of the loss of defensive adaptations.... an ecological naiveté…these animals aren’t imbeciles. Evolution has merely prepared them for a life in a world that is simpler and more innocent”…. where humans are entirely outside their experience. David Quammen (Island Biography in an age of extinction) 1996 1 ABSTRACT The Falkland Islands are globally important for the Striated Caracaras (Phalcoboenus australis). They reside mainly on the outer islands of the archipelago in strong associated with seabird populations, and where human interference is relatively low. A survey of the breeding population conducted in the austral summers of 2013/2014 and 2014/2015 indicates that the current population is likely to be the highest it has been for perhaps the last 100 years. -
Genome Composition Plasticity in Marine Organisms
Genome Composition Plasticity in Marine Organisms A Thesis submitted to University of Naples “Federico II”, Naples, Italy for the degree of DOCTOR OF PHYLOSOPHY in “Applied Biology” XXVIII cycle by Andrea Tarallo March, 2016 1 University of Naples “Federico II”, Naples, Italy Research Doctorate in Applied Biology XXVIII cycle The research activities described in this Thesis were performed at the Department of Biology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, Naples, Italy and at the Fishery Research Laboratory, Kyushu University, Fukuoka, Japan from April 2013 to March 2016. Supervisor Dr. Giuseppe D’Onofrio Tutor Doctoral Coordinator Prof. Claudio Agnisola Prof. Ezio Ricca Candidate Andrea Tarallo Examination pannel Prof. Maria Moreno, Università del Sannio Prof. Roberto De Philippis, Università di Firenze Prof. Mariorosario Masullo, Università degli Studi Parthenope 2 LIST OF PUBLICATIONS 1. On the genome base composition of teleosts: the effect of environment and lifestyle A Tarallo, C Angelini, R Sanges, M Yagi, C Agnisola, G D’Onofrio BMC Genomics 17 (173) 2016 2. Length and GC Content Variability of Introns among Teleostean Genomes in the Light of the Metabolic Rate Hypothesis A Chaurasia, A Tarallo, L Bernà, M Yagi, C Agnisola, G D’Onofrio PloS one 9 (8), e103889 2014 3. The shifting and the transition mode of vertebrate genome evolution in the light of the metabolic rate hypothesis: a review L Bernà, A Chaurasia, A Tarallo, C Agnisola, G D'Onofrio Advances in Zoology Research 5, 65-93 2013 4. An evolutionary acquired functional domain confers neuronal fate specification properties to the Dbx1 transcription factor S Karaz, M Courgeon, H Lepetit, E Bruno, R Pannone, A Tarallo, F Thouzé, P Kerner, M Vervoort, F Causeret, A Pierani and G D’Onofrio EvoDevo, Submitted 5. -
We Are Saeri Chairman’S Foreword
WE ARE SAERI CHAIRMAN’S FOREWORD The annual report shows an Institute In the accounts for our second year as an growing in confidence. The foundations independent charity clearly show: and fundamentals established last year • We have achieved a near break-even WE ARE SAERI have been built upon successfully. budget in year 2 in the unrestricted The quality, dedication and talent of our funds, indicating sound financial staff remain central to the achievement of planning, management and tight our mission. It is their research excellence financial controls. and academic rigour that ensure our work • Careful cost controls resulting in a | CHAIRMAN is valued to international standards. It is slight decrease in operating expenditure their dedication and approach that have (£370,000 to £360,000), which wage helped us build new partnerships and and other inflationary pressures extend our reach. It is their commitment managed by strict financial oversight. to delivery and customer service that • Greater sophistication in the delivery of have seen income growth through our contracted activities through our trading commercial subsidiary, SAERI (Falklands) subsidiary resulting in increased Limited. Through our scientists’ work we recharges and donations to the charity have discovered more about the the world which contribute to its core costs. around us and moved the frontiers of knowledge. In addition, our work has repeatedly been independently tested and both our closed This year we have identified new species projects (Darwin Cetaceans and Natural – one of which now bears SAERI’s name - Capital Assessment (NCA)) and our and delivered excellent science. We have Group’s accounts have received brought more world class researchers unqualified audits. -
Homogeneous Nuclear Background for Mitochondrial Cline in Northern Range of Notochthamalus Scabrosus
INVESTIGATION Homogeneous Nuclear Background for Mitochondrial Cline in Northern Range of Notochthamalus scabrosus Christina Zakas,* Ken Jones,† and John P. Wares‡,1 *New York University, Center for Genomics and Systems Biology, New York, New York 10003, †University of Colorado, Aurora, Colorado 80045, and ‡University of Georgia, Athens, Georgia 30602 ABSTRACT A mitochondrial cline along the Chilean coast in the barnacle Notochthamalus scabrosus KEYWORDS suggests a species history of transient allopatry and secondary contact. However, previous studies of RAD-seq nuclear sequence divergence suggested population genetic homogeneity across northern and central SNP Chile. Here, we collect single-nucleotide polymorphism data from pooled population samples sequenced cytonuclear with restriction site2associated DNA sequencing procedures, confirm these data with the use of a Golden- disequilibrium Gate array, and identify a discordance between population genetic patterns in the nuclear and mitochon- barnacle drial genomes. This discordance was noted in previous work on this species, but here it is confirmed that the Chile nuclear genome exhibits only slight phylogeographic variation across 3000 km of coastline, in the presence of a strong and statistically significant mitochondrial cline. There are nevertheless markers (approximately 5% of nuclear single-nucleotide polymorphisms) exhibiting cytonuclear disequilibrium relative to mitotype. Although these data confirm our previous explorations of this species, it is likely that some of the nuclear genomic diversity of this species has yet to be explored, as comparison with other barnacle phylogeography studies suggest that a divergence of similar magnitude should be found in the nuclear genome somewhere else in the species range. Patterns of mitochondrial diversity have heralded great discoveries in Pavlova et al. -
Benthic Assemblages in South American Intertidal Rocky Shores: Biodiversity, Services, and Threats
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/299507578 Benthic Assemblages in South American Intertidal Rocky Shores: Biodiversity, Services, and Threats Chapter · January 2016 READS 318 29 authors, including: Gregorio Bigatti Alvar Carranza IBIOMAR- Instituto de Biología de Organismo… University of the Republic, Uruguay 82 PUBLICATIONS 563 CITATIONS 96 PUBLICATIONS 814 CITATIONS SEE PROFILE SEE PROFILE Tito Lotufo Erasmo C Macaya University of São Paulo University of Concepción 37 PUBLICATIONS 216 CITATIONS 63 PUBLICATIONS 441 CITATIONS SEE PROFILE SEE PROFILE All in-text references underlined in blue are linked to publications on ResearchGate, Available from: Alvar Carranza letting you access and read them immediately. Retrieved on: 26 May 2016 Chapter BENTHIC ASSEMBLAGES IN SOUTH AMERICAN INTERTIDAL ROCKY SHORES: BIODIVERSITY, SERVICES, AND THREATS Patricia Miloslavich1,2, Juan José Cruz-Motta,1,3, Alejandra Hernández1,4, César Herrera1, Eduardo Klein1, Francisco Barros5, Gregorio Bigatti6, Maritza Cárdenas7, Alvar Carranza8, Augusto Flores9, Patricia Gil10, Judith Gobin11, Jorge Gutiérrez12, Marcos Krull5, Juan F. Lazarus13, Edgardo Londoño13, Tito Lotufo9, Erasmo Macaya14, Elba Mora15, Sergio Navarrete16, Gabriela Palomo17, Mirtala Parragué16, Franciane Pellizzari18, Rosana Rocha19, Leonardo Romero20, Roberto Retamales21, Roger Sepúlveda22, Michelle C. Silva18 and Sabrina Soria17 1Universidad Simón Bolívar, Caracas, Venezuela 2Australian Institute of Marine Science, -
Themisto Amphipods in High-Latitude Marine Pelagic Food Webs
1 Predatory zooplankton on the move: 2 Themisto amphipods in high-latitude marine pelagic food webs 3 4 Charlotte Havermans*1, 2, Holger Auel1, Wilhelm Hagen1, Christoph Held2, Natalie Ensor3, Geraint Tarling3 5 1 Universität Bremen, BreMarE - Bremen Marine Ecology, Marine Zoology, 6 PO Box 330 440, 28334 Bremen, Germany 7 2 Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung, 8 Am Handelshafen 12, 27568 Bremerhaven, Germany 9 3 Natural Environment Research Council, 10 High Cross Madingley Road, Cambridge, CB3 0ET, United Kingdom 11 12 *corresponding author 13 E-mail: [email protected] 14 Tel: +49 421 218 63037 15 ORCID ID: 0000-0002-1126-4074 16 https://doi.org/10.1016/bs.amb.2019.02.002 17 ABSTRACT 18 Hyperiid amphipods are predatory pelagic crustaceans that are particularly prevalent in high-latitude 19 oceans. Many species are likely to have co-evolved with soft-bodied zooplankton groups such as salps 20 and medusae, using them as substrate, for food, shelter or reproduction. Compared to other pelagic 21 groups, such as fish, euphausiids and soft-bodied zooplankton, hyperiid amphipods are poorly studied 22 especially in terms of their distribution and ecology. Hyperiids of the genus Themisto, comprising seven 23 distinct species, are key players in temperate and cold-water pelagic ecosystems where they reach 24 enormous levels of biomass. In these areas, they are important components of marine food webs, and 25 they are major prey for many commercially important fish and squid stocks. In northern parts of the 26 Southern Ocean, Themisto are so prevalent that they are considered to take on the role that Antarctic 1 27 krill play further south. -
Homogeneous Nuclear Background for Mitochondrial Cline in Northern Range of Notochthamalus Scabrosus
G3: Genes|Genomes|Genetics Early Online, published on December 17, 2013 as doi:10.1534/g3.113.008383 HOMOGENEOUS NUCLEAR BACKGROUND FOR MITOCHONDRIAL CLINE IN NORTHERN RANGE OF NOTOCHTHAMALUS SCABROSUS Manuscript for G3 Version 11/26/13 Zakas, C.1 Jones, K.2 Wares, J. P.3 1 New York University, Center for Genomics and Systems Biology, NY, NY 10003 2 University of Colorado, Aurora, CO 80045 3 University of Georgia, Athens, GA 30602 Data available in public repositories: NCBI BioProject PRJNA227359 © The Author(s) 2013. Published by the Genetics Society of America. Running Title: Low SNP variation in Notochthamalus Keywords: RAD-seq, SNP, cytonuclear disequilibrium, barnacle, Chile Corresponding author: J. P. Wares Department of Genetics University of Georgia Athens, Georgia, USA 30602 [email protected] 2 Abstract A mitochondrial cline along the Chilean coast in the barnacle Notochthamalus scabrosus suggests a species history of transient allopatry and secondary contact. However, previous studies of nuclear sequence divergence suggested population genetic homogeneity across northern and central Chile. Here we collect SNP data from pooled population samples sequenced with RAD-seq procedures, confirm these data using a GoldenGate array, and identify a discordance between population genetic patterns in the nuclear and mitochondrial genomes. This discordance was noted in previous work on this species, but here it is confirmed that the nuclear genome exhibits only slight phylogeographic variation across 3000km of coastline, in the presence of a strong and statistically significant mitochondrial cline. There are nevertheless markers (approximately 5% of nuclear SNPs) exhibiting cytonuclear disequilibrium relative to mitotype. Although these data confirm our previous explorations of this species, it is likely that some of the nuclear genomic diversity of this species has yet to be explored, as comparison with other barnacle phylogeography studies suggest that a divergence of similar magnitude should be found in the nuclear genome somewhere else in the species range. -
The Sessile Organisms Society of Japan
Sessile Organisms 23(1):1-15 (2006) The Sessile Organisms Society of Japan フジツボ類の分類お よび鑑定の手引き 山口寿之1), 久恒義之2) 1)千葉大学海洋バイ オシステム研 究セ ンター 〒263-8522 千葉 県千葉 市稲 毛区弥生町1-33 2)東京都立 向島工業 高等学校 〒131-0043東 京都墨 田区立花 四丁 目29-7 Taxonomy and identification of Japanese barnacles Toshiyuki Yamaguchi1) and Yoshiyuki Hisatsune2) 1) Marine Biosystems Research Center, Chiba University, 1-33 Yayoi, Inage, Chiba 263-8522, Japan 2) Mukohjima Technological Highschool, 4-29-7 Tachibana, Sumida, Tokyo 131-0043, Japan (Accepted December 14, 2005) (キ ー ワ ー ド: フ ジ ツ ボ 類、 分 類、 鑑 定) 蔓脚類 は固着性で、 一般 に小型の石灰質 の殻 を持つ 甲 にも生息 す る。 海洋 の プ レー ト境界、 海 洋 プ レー トの 殻類 である。 フジツボ、 カ メノテ、 エ ボシガイ がその代 (収束域 であ る) サブダ クシ ョン、 それ に伴 って形成 さ 表 で、 つるあ し類 とも呼ばれ る。固着生活へ の適応 のた れ る背弧海盆 には、海底火 山活動 または冷湧水活動 があ め、形 態の特殊化 が著 しく、 フジ ツボ類 は長い間 甲殻類 る。深海 の熱水 ・冷湧水活動域 にはそ こに固有 の原始 的 の一員 である とは思われなか った。 な蔓脚類 が生息す るこ とが1970年 代後 半知 られる よ うに 蔓脚類 は19世 紀前半まで、 軟体動物の一員 と見 な され な った。 地表近 くに棲む生物 は, みな太 陽の恵 みを受 け ていたが、 甲殻類 に共通す るノープ リウス幼生期 を経 る てい る。我 々です ら直接 または間接 に太 陽の光で光合成 ことが明 らかにな り甲殻類に含 められた。 脱皮 ご とに変 をす る植物 を摂取 して, そのエネルギーを利用 している。 態す る 自由遊泳性 の6期 の ノープ リウス幼生期 とそれ に 深海の熱水噴 出孔 には太 陽光 は到達せず, エネル ギー源 続 く1期 のキプ リス幼生期 を経て固着生活 に移 る。体 は と しての光 を利用 できない。熱水や冷湧水 に含 まれ てい 基本 的には頭 部5体 節、 胸部6体 節の体制か らな り、腹 る硫黄 な どの無機物お よび それ を摂 取す る細 菌 (バクテ 部 の体節 は退化 してい る。頭部の各体節は前か ら順 に第 リア) が, それぞれ地表 での光エネル ギーおよび植物 に 一触角、 第 二触角、 大顎、 第一小顎、 第二小顎の対 をな 相当 し, それ らが熱水噴 出孔周辺の生態系の根幹 をなす。 す付属肢 を持 つ。 大顎の前に 口が あ り、大顎 を含 めた後 そん な特異 な生態系 に全 く未知 の動物 が生息 しているこ ろ3対 の付属肢 が 口器 と呼ばれ る。胸部の各体節 には対 とだ けで なく, それ らが非常 に原始 的であるこ とに驚 き をなす二叉型 で、つ る (蔓) 状の摂食用の付属肢 を持つ。 -
The Distribution, Abundance and Population Trends of Gentoo, Rockhopper and King Penguins in the Falkland Islands
The distribution, abundance and population trends of gentoo, rockhopper and king penguins in the Falkland Islands M. Bingham The Falkland Islands are a globally important breeding location for seabirds, including penguins. The total breeding populations of three of the four main penguin species present in the Falklands were censused in the austral summer of1995/96. The results for gentoo and rockhopper penguins suggest declines of about 43 and 90 per cent, respectively, since a similar census in 1932/33. Recent monitoring studies suggest that these declines are still continuing; research to investigate causes (which is likely to reflect changes in the marine, rather than terrestrial environment) is a high priority. In contrast, king penguin populations, currently c. 400 pairs, have increased steadily, by 700 per cent since 1980/81, in line with world-wide trends for this species. Introduction The Falklands' population of king penguin Aptenodytes patagonicus is very small, but was The Falkland Islands lie in the south-west still included in the census. The fourth main Atlantic, approximately 450 km north-east of Falklands' penguin, the magellanic penguin the southern tip of South America. The archi- Spheniscus magellanicus, was not included in pelago is made up of two main islands and this census because of the difficulties of cen- several hundred smaller islands, which are susing a species that nests in burrows. home to large numbers of breeding seabirds, including penguins. The Falkland Islands have the world's largest breeding population of Methods rockhopper penguins Eudyptes c. chrysocome, and the second largest population of gentoo Most breeding-site locations were already penguins Pygoscelis papua (Croxall et al., 1984). -
A Preliminary Assessment of Endangered Sei Whales ( Balaenoptera Borealis ) in Two Candidate Key Biodiversity Areas in West Falkland
A preliminary assessment of endangered sei whales ( Balaenoptera borealis ) in two candidate Key Biodiversity Areas in West Falkland Author: Dr Caroline Weir, Sei Whale Project Officer Produced by: Falklands Conservation, Jubilee Villas, Ross Road, Stanley, Falkland Islands Version: 1.2 Date: 3 September 2018 1 CONTENTS Contents .................................................................................................................................................. 2 Acronyms ................................................................................................................................................ 5 Non-Technical Summary ........................................................................................................................ 6 1. Introduction ................................................................................................................................... 10 1.1. Rationale ............................................................................................................................... 10 1.2. Report format ........................................................................................................................ 11 1.3. Research permits ................................................................................................................... 11 2. Aims and Objectives ..................................................................................................................... 12 3. Study Area ................................................................................................................................... -
John P. Wares Publications
John P. Wares wareslab.genetics.uga.edu University of Georgia – Department of Genetics & Odum School of Ecology Education B.S. in Zoology with Honors University of Oklahoma, 1995 Ph.D. in Zoology and Genetics Duke University, 2000 Postdoctoral Training University of New Mexico PI: Tom Turner, 2000-2002 University of California, Davis PI: Rick Grosberg, 2002-2004 Academic Positions Assistant Professor University of Georgia, 2005-2011 Associate Professor University of Georgia, 2011-present Visiting Lecturer UW - Friday Harbor Labs, summer 2016 Publications (n=90; 76 while at UGA) n.b. I tend to promote students and junior colleagues via 1st authorship, with senior authorship as last. I also have a philosophical goal in publishing as much in Open Access and low-cost journals as possible. ξ equal authorship *student 2019 (0) 2018 (2) Wares, J. P., S. Crickenberger, A. F. Govindarajan, J. L. Hamrick, K. M. Skoczen, D. W. Trapnell, and D. S. Wethey. 2018. The cryptic population biology of Chthamalus fragilis Darwin, 1854 on the Atlantic coast of North America. J. Crustacean Biol., DOI: doi.org/10.1093/jcbiol/ruy070. Ewers-Saucedo, C.* and J. P. Wares. 2018. Population connectivity and phylogeography of Crustaceans. In: G. Poore and M. Thiel, eds. Evolution and Biogeography. The Natural History of the Crustacea, vol. 8. in press. 2017 (5) Ewers-Saucedo, C*., B. K. K. Chan, J. D. Zardus, and J. P. Wares. 2017. Parallel patterns of host-specific morphology and genetic admixture in sister lineages of a commensal barnacle. Biol. Bull. 232:171-185. Chandler, V. K*. and J. P. Wares.