I. Micromycetes
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Introduction to Mycology
INTRODUCTION TO MYCOLOGY The term "mycology" is derived from Greek word "mykes" meaning mushroom. Therefore mycology is the study of fungi. The ability of fungi to invade plant and animal tissue was observed in early 19th century but the first documented animal infection by any fungus was made by Bassi, who in 1835 studied the muscardine disease of silkworm and proved the that the infection was caused by a fungus Beauveria bassiana. In 1910 Raymond Sabouraud published his book Les Teignes, which was a comprehensive study of dermatophytic fungi. He is also regarded as father of medical mycology. Importance of fungi: Fungi inhabit almost every niche in the environment and humans are exposed to these organisms in various fields of life. Beneficial Effects of Fungi: 1. Decomposition - nutrient and carbon recycling. 2. Biosynthetic factories. The fermentation property is used for the industrial production of alcohols, fats, citric, oxalic and gluconic acids. 3. Important sources of antibiotics, such as Penicillin. 4. Model organisms for biochemical and genetic studies. Eg: Neurospora crassa 5. Saccharomyces cerviciae is extensively used in recombinant DNA technology, which includes the Hepatitis B Vaccine. 6. Some fungi are edible (mushrooms). 7. Yeasts provide nutritional supplements such as vitamins and cofactors. 8. Penicillium is used to flavour Roquefort and Camembert cheeses. 9. Ergot produced by Claviceps purpurea contains medically important alkaloids that help in inducing uterine contractions, controlling bleeding and treating migraine. 10. Fungi (Leptolegnia caudate and Aphanomyces laevis) are used to trap mosquito larvae in paddy fields and thus help in malaria control. Harmful Effects of Fungi: 1. -
What Are Fungi?
Medical Mycology (BIOL 4849) Summer 2007 Dr. Cooper What are Fungi? Fungi in the Tree of Life • Living organisms on earth first arose about 3.5 billion years ago – Prokaryotic – Anaerobic • Oldest fossils of fungi are about 460 million years old • Coincides with the rapid expansion of multi-cellular organisms • Major multicellular eukaryotes are divided into Kingdoms – Animals – Plants – Fungi • Each of these three kingdoms differ in their basic cellular structure and mode of nutrition (defined by Whittaker, 1969) – Plants - photosynthetic, cellulosic cell walls – Animals - digestive systems, wall-less cells – Fungi - absorptive nutrition, chitinous walls • The estimates for the expansion of multicellular organisms are based upon phylogenetic analyses of Carl Woese – Examined ribosomal RNA (rRNA) • Present in prokaryotes and eukaryotes • Relatively stable, but changes occur over time; thereby acting as a chronometer – Distinguished three separate groups (Domains) of living organisms • Domains - rRNA sequence differences correlate with differences in cellular structure and physiology – Bacteria - “true bacteria” – Archaea - “ancient prokaryotes” – Eucarya - eukaryotes • Taxonomic grouping of “Kingdom” lies beneath that of “Domain” • Though the fossil evidence suggests fungi were present on earth about 450 million years ago, aquatic fungi (Phylum Chytridiomycota) most likely were present about a million years before this time Page 1 of 15 Copyright © 2007 Chester R. Cooper, Jr. Medical Mycology (BIOL 4849) Lecture 1, Summer 2007 • About -
Preliminary Classification of Leotiomycetes
Mycosphere 10(1): 310–489 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/7 Preliminary classification of Leotiomycetes Ekanayaka AH1,2, Hyde KD1,2, Gentekaki E2,3, McKenzie EHC4, Zhao Q1,*, Bulgakov TS5, Camporesi E6,7 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4Landcare Research Manaaki Whenua, Private Bag 92170, Auckland, New Zealand 5Russian Research Institute of Floriculture and Subtropical Crops, 2/28 Yana Fabritsiusa Street, Sochi 354002, Krasnodar region, Russia 6A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy. 7A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314 Brescia, Italy. Ekanayaka AH, Hyde KD, Gentekaki E, McKenzie EHC, Zhao Q, Bulgakov TS, Camporesi E 2019 – Preliminary classification of Leotiomycetes. Mycosphere 10(1), 310–489, Doi 10.5943/mycosphere/10/1/7 Abstract Leotiomycetes is regarded as the inoperculate class of discomycetes within the phylum Ascomycota. Taxa are mainly characterized by asci with a simple pore blueing in Melzer’s reagent, although some taxa have lost this character. The monophyly of this class has been verified in several recent molecular studies. However, circumscription of the orders, families and generic level delimitation are still unsettled. This paper provides a modified backbone tree for the class Leotiomycetes based on phylogenetic analysis of combined ITS, LSU, SSU, TEF, and RPB2 loci. In the phylogenetic analysis, Leotiomycetes separates into 19 clades, which can be recognized as orders and order-level clades. -
On the Relationships of Paecilomyces Sect. Isarioidea Species1
Mycol. Res. 109 (5): 581–589 (May 2005). f The British Mycological Society 581 doi:10.1017/S0953756205002741 Printed in the United Kingdom. On the relationships of Paecilomyces sect. Isarioidea species1 J. Jennifer LUANGSA-ARD1,2, Nigel L. HYWEL-JONES1, Leka MANOCH2 and Robert A. SAMSON2,3* 1 BIOTEC, NSTDA Science Park, 113 Paholyothin Road, Khlong 1, Khlong Luang, Pathum Thani, Thailand. 2 Department of Plant Pathology, Faculty of Agriculture, Kasetsart University, Bangkok 10900, Thailand. 3 Centraalbureau voor Schimmelcultures, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. E-mail : [email protected] Received 21 May 2004; accepted 14 February 2005. Phylogenetic relationships of Paecilomyces sect. Isarioidea species were analysed using the b-tubulin gene and ITS rDNA. Maximum parsimony analyses showed that the section does not form a natural taxonomic group and is polyphyletic within the Hypocreales. However, a group was recognized, designated as the Isaria clade, to be monophyletic comprising of the following Paecilomyces species: P. amoeneroseus, P. cateniannulatus, P. cateniobliquus, P. cicadae, P. coleopterorus, P. farinosus, P. fumosoroseus, P. ghanensis, P. javanicus and P. tenuipes. Some of these species have teleomorphs in Cordyceps. INTRODUCTION species from our current work and focus on species accepted to be within the Hypocreales. The work pres- The genus Paecilomyces as conceived by Bainier (1907) ented here aimed to determine if an entomogenous is only monophyletic within the order Eurotiales when habit for sect. Isarioidea is a monophyletic character- characterised by a Byssochlamys teleomorph using an istic within the Hypocreales. With a view to considering 18S phylogeny (Luangsa-ard, Hywel-Jones & Samson whether the genus name Isaria should be resurrected 2004). -
Biology of Fungi, Lecture 2: the Diversity of Fungi and Fungus-Like Organisms
Biology of Fungi, Lecture 2: The Diversity of Fungi and Fungus-Like Organisms Terms You Should Understand u ‘Fungus’ (pl., fungi) is a taxonomic term and does not refer to morphology u ‘Mold’ is a morphological term referring to a filamentous (multicellular) condition u ‘Mildew’ is a term that refers to a particular type of mold u ‘Yeast’ is a morphological term referring to a unicellular condition Special Lecture Notes on Fungal Taxonomy u Fungal taxonomy is constantly in flux u Not one taxonomic scheme will be agreed upon by all mycologists u Classical fungal taxonomy was based primarily upon morphological features u Contemporary fungal taxonomy is based upon phylogenetic relationships Fungi in a Broad Sense u Mycologists have traditionally studied a diverse number of organisms, many not true fungi, but fungal-like in their appearance, physiology, or life style u At one point, these fungal-like microbes included the Actinomycetes, due to their filamentous growth patterns, but today are known as Gram-positive bacteria u The types of organisms mycologists have traditionally studied are now divided based upon phylogenetic relationships u These relationships are: Q Kingdom Fungi - true fungi Q Kingdom Straminipila - “water molds” Q Kingdom Mycetozoa - “slime molds” u Kingdom Fungi (Mycota) Q Phylum: Chytridiomycota Q Phylum: Zygomycota Q Phylum: Glomeromycota Q Phylum: Ascomycota Q Phylum: Basidiomycota Q Form-Phylum: Deuteromycota (Fungi Imperfecti) Page 1 of 16 Biology of Fungi Lecture 2: Diversity of Fungi u Kingdom Straminiplia (Chromista) -
Effects of Sugars and Salt on the Production of Glycosphingolipids in Mariannaea Elegans
Trace Nutrients Research 31 : 37−44(2014) Original Article Effects of Sugars and Salt on the Production of Glycosphingolipids in Mariannaea Elegans 1, 2) 1) 1, 2) 1, †) Yasushi Tani , Yasunori Yamashita , Shigeki Saito and Hisaaki Mihara 1)Department of Biotechnology, College of Life Sciences, Ritsumeikan University * , 2)Ritsumeikan Global Innovation Research Organization, Ritsumeikan University * Summary Glycosphingolipids (GSLs) are complex macromolecules in cell membranes that play important roles in various bio- logical processes. Fungi contain several types of GSLs that are distinct from those of mammals, but little is known about their physiological functions, metabolic regulation, or biosynthetic pathways. Most fungal species that possess fungal neogala-series GSLs (FNG-GSLs) are resistant to aureobasidin A (AbA), an antifungal agent that inhibits glyco- sylinositolphosphoceramide (GIPC) synthesis. We have previously reported that Mariannaea elegans has FNG-GSLs in its cell membrane, despite the fact that it is sensitive to AbA. In this study, we demonstrated that M. elegans contains GIPCs, which explains its sensitivity to AbA. We also found that both cell growth and GSL composition of M. elegans were affected by the presence or absence of different sugars in the culture medium. In contrast, sugars had no effect on the phenotypes and GSLs of AbA-resistant Rhizopus sp. lacking GIPCs. Further analysis revealed that FNG-GSL production can be modulated by the addition of 600 mM NaCl in a glucose-containing medium. Fi- nally, sodium dodecyl sulfate-polyacrylamide gel electrophoresis analysis of Golgi proteins from M. elegans showed that at least nine proteins were present exclusively in cells producing FNG-GSL, suggesting that those proteins are potential candidates for FNG-GSL synthesis. -
Classification of the Fungi Lmperfecti
Proceedings of the Iowa Academy of Science Volume 63 Annual Issue Article 28 1956 Classification of the ungiF lmperfecti Roger D. Goos State University of Iowa Let us know how access to this document benefits ouy Copyright ©1956 Iowa Academy of Science, Inc. Follow this and additional works at: https://scholarworks.uni.edu/pias Recommended Citation Goos, Roger D. (1956) "Classification of the ungiF lmperfecti," Proceedings of the Iowa Academy of Science, 63(1), 311-320. Available at: https://scholarworks.uni.edu/pias/vol63/iss1/28 This Research is brought to you for free and open access by the Iowa Academy of Science at UNI ScholarWorks. It has been accepted for inclusion in Proceedings of the Iowa Academy of Science by an authorized editor of UNI ScholarWorks. For more information, please contact [email protected]. Goos: Classification of the Fungi lmperfecti Classification of the Fungi lmperfecti By RocER D. Goos In recent years, some dissatisfaction has been expressed concern ing the commonly used classification of the Fungi Imperfecti. The discontent with the present system has arisen from the fact that the characteristics used to delimit taxa (i.e. spore color and sep tation, arrangement of the conidiophores, etc.) often results in the separation of morphologically similar genera, while at the same time placing together what seem to be unrelated genera. The present system was proposed by Saccardo when the major interest in the Fungi Imperfecti was in their role as plant pathogens. Now these fungi are being studied more intensively than ever be fore, not only as plant pathogens, but also with reference to the other roles which they play in nature. -
NK003-20170612006.Pdf
BioControl (2010) 55:89–102 DOI 10.1007/s10526-009-9238-5 Entomopathogenic fungi and insect behaviour: from unsuspecting hosts to targeted vectors Jason Baverstock • Helen E. Roy • Judith K. Pell Received: 20 July 2009 / Accepted: 5 October 2009 / Published online: 29 October 2009 Ó International Organization for Biological Control (IOBC) 2009 Abstract The behavioural response of an insect to Keywords Entomopathogenic fungi Á a fungal pathogen will have a direct effect on the Attraction Á Avoidance Á Transmission Á efficacy of the fungus as a biological control agent. In Vectoring Á Autodissemination this paper we describe two processes that have a significant effect on the interactions between insects and entomopathogenic fungi: (a) the ability of target Introduction insects to detect and avoid fungal pathogens and (b) the transmission of fungal pathogens between host A co-evolutionary arms race occurs between insects insects. The behavioural interactions between insects and their pathogens. Whereas selection on the and entomopathogenic fungi are described for a pathogen is for greater exploitation of the host, variety of fungal pathogens ranging from commer- selection on the host is for greater exclusion of the cially available bio-pesticides to non-formulated pathogen (Bush et al. 2001; Roy et al. 2006). The naturally occurring pathogens. The artificial manip- evolution of this behaviour and a description of some ulation of insect behaviour using dissemination of the diverse interactions that occur between arthro- devices to contaminate insects with entomopatho- pods and fungi have recently been described in a genic fungi is then described. The implications of review by Roy et al. -
An Overview of the Taxonomy, Phylogeny, and Typification of Nectriaceous Fungi in Cosmospora, Acremonium, Fusarium, Stilbella, and Volutella
available online at www.studiesinmycology.org StudieS in Mycology 68: 79–113. 2011. doi:10.3114/sim.2011.68.04 An overview of the taxonomy, phylogeny, and typification of nectriaceous fungi in Cosmospora, Acremonium, Fusarium, Stilbella, and Volutella T. Gräfenhan1, 4*, H.-J. Schroers2, H.I. Nirenberg3 and K.A. Seifert1 1Eastern Cereal and Oilseed Research Centre, Biodiversity (Mycology and Botany), 960 Carling Ave., Ottawa, Ontario, K1A 0C6, Canada; 2Agricultural Institute of Slovenia, 1000 Ljubljana, Slovenia; 3Julius-Kühn-Institute, Institute for Epidemiology and Pathogen Diagnostics, Königin-Luise-Str. 19, D-14195 Berlin, Germany; 4Current address: Grain Research Laboratory, Canadian Grain Commission, 1404-303 Main Street, Winnipeg, Manitoba, R3C 3G8, Canada *Correspondence: [email protected] Abstract: A comprehensive phylogenetic reassessment of the ascomycete genus Cosmospora (Hypocreales, Nectriaceae) is undertaken using fresh isolates and historical strains, sequences of two protein encoding genes, the second largest subunit of RNA polymerase II (rpb2), and a new phylogenetic marker, the larger subunit of ATP citrate lyase (acl1). The result is an extensive revision of taxonomic concepts, typification, and nomenclatural details of many anamorph- and teleomorph-typified genera of theNectriaceae, most notably Cosmospora and Fusarium. The combined phylogenetic analysis shows that the present concept of Fusarium is not monophyletic and that the genus divides into two large groups, one basal in the family, the other terminal, separated by a large group of species classified in genera such as Calonectria, Neonectria, and Volutella. All accepted genera received high statistical support in the phylogenetic analyses. Preliminary polythetic morphological descriptions are presented for each genus, providing details of perithecia, micro- and/or macro-conidial synanamorphs, cultural characters, and ecological traits. -
BEAUVERIA and OTHER FUNGI: TOOLS to HELP MANAGE COFFEE BERRY BORER, NOT MAGIC BULLETS Stefan T
BEAUVERIA AND OTHER FUNGI: TOOLS TO HELP MANAGE COFFEE BERRY BORER, NOT MAGIC BULLETS Stefan T. Jaronski USDA Agricultural Research Service Northern Plains Research Laboratory Sidney, Montana Mention of trade names or commercial products in this publication is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the U.S. Department of Agriculture. USDA is an equal opportunity provider and employer. 1 What I hope to tell you today 1. Some basic information about these fungi 2. Issues facing successful use of fungi 3. Thoughts about usefulness of Beauveria for CBB management (vs. control!) 2 Entomopathogenic Ascomycetes / Hyphomycetes Our Cast of Characters Beauveria bassiana & B. brongniartti Metarhizium anisopliae & M. acridum Lecanicillium longisporium, L muscarium, L sp. (Verticillium lecanii) Hirsutella thompsoni Isaria (Paecilomyces) fumosorosea & I. farinosus Nomuraea rileyi Aschersonia aleyrodis These fungi have been commercialized somewhere, at sometime. This is the primary “cast of characters” While historically all these fungi were classed in the Deuteromycetes, the Fungi Imperfecti, recent molecular tools have allowed scientist to associate these species with “perfect” stages all are the imperfect, assexual stages of Ascomycetes. My comments today will be generally restricted to the fungus Beauveria bassiana (in white) because that is the one in which you are most interested. 3 Mycoinsecticides: 110 active, commercial products in 2006 L. longisporium L. muscarium H. thompsonii 3% I. farinosus 2% 1% 1% I. fumosorosea 6% M. acridum 3% B. bassiana 40% M. anisopliae 39% B. brongniartii 5% Faria and Wraight Biological Control 43 (2007) 237–256 These fungi have been commercialized in a lot of countries and there are a lot of fungal products. -
Davis Overview of Fungi and Diseases 2014
JHH ID Tutorials Dr Josh Davis December 2014 MYCOLOGY OVERVIEW 1. OVERVIEW. It is estimated that there are 1.5 million extant species of fungi on Earth, of which 60,000 have been described/named; of these only approximately 400 species have ever been described to cause disease in humans and only approximately 20 do so with any frequency. Many others are plant pathogens or symbionts. At least 13,500 fungal species form lichens, symbiotic partnerships between fungi (usually ascomycota) and photosynthetic microbes (eg. algae, cyanobacteria). 2. CLASSIFICATION. There are several confusing/overlapping classifications systems for fungi. 2.1 Biological Kingdom FUNGI; Phyla: 2.1.1 Phylum Zygomycota – Agents of zygomycosis, “mucormycosis”. Most primitive fungi. Broad, ribbon-like hyphae, no septae. Generally grow fast on agar (“lid-lifters”). 2.1.1.1 Order Mucorales – eg. Rhizopus, Rhizomucor, Mucor, Saskanaea, Cuninghamella 2.1.1.2 Order Entomophthorales – Basidiobolus, Canidiobolus 2.1.2 Phylum Basidiomycota – Mushrooms, jelly fungi, smuts, rusts, stinkhorns . and the teleomorph of cryptococcus! 2.1.3 Phylum Ascomycota – e.g. Pseudoallescheria, Curvularia, Saccharomyces. 2.1.4 Phylum Deuteromycota, or Fungi Imperfecti. Not a true phylum. Contains asexual (“imperfect”) forms of fungi (anamorphs), most of which have not had a sexual form described. Most human pathogens are in this group – eg: Aspergillus, Candida, Cryptococcus, Scedosporium, Alternaria, Trichophyton, Cladosporium etc. etc. 1. Sporotrix at 37 and 25 degrees; 2. Aspergillus fumigatus, niger, terreus, flavus (L to R); 3. Candida albicans 2.2 Morphological 2.2.1 Broad classification - Yeasts, Moulds and Dimorphic Fungi 2.2.1.1 Yeasts are single-celled organisms which reproduce by budding and grow as smooth colonies on agar. -
Oncorhynchus Mykiss) Liam T
University of New Mexico UNM Digital Repository Biology ETDs Electronic Theses and Dissertations 7-1-2014 The microbiome of rainbow trout (Oncorhynchus mykiss) Liam T. Lowrey Follow this and additional works at: https://digitalrepository.unm.edu/biol_etds Recommended Citation Lowrey, Liam T.. "The microbiome of rainbow trout (Oncorhynchus mykiss)." (2014). https://digitalrepository.unm.edu/biol_etds/ 73 This Thesis is brought to you for free and open access by the Electronic Theses and Dissertations at UNM Digital Repository. It has been accepted for inclusion in Biology ETDs by an authorized administrator of UNM Digital Repository. For more information, please contact [email protected]. Liam Lowrey Candidate UNM Department of Biology Department This thesis is approved, and it is acceptable in quality and form for publication: Approved by the Thesis Committee: Dr. Irene Salinas , Chairperson Dr. Cristina Takacs-Vesbach Dr. Robert Miller i The microbiome of rainbow trout (Oncorhynchus mykiss) by LIAM T. LOWREY B.A., BIOLOGY, UNIVERSITY OF NEW MEXICO, 2011 THESIS Submitted in Partial Fulfillment of the Requirements for the Degree of Masters of Science Biology The University of New Mexico Albuquerque, New Mexico July, 2014 ii ACKNOWLEDGMENTS I gratefully acknowledge Irene Salinas, my advisor and thesis chair, for continuing to encourage me through all the ups and downs, the failures and accomplishments, and the vast amounts of time she spent helping to write the chapters. Her guidance and passion for science will continue to guide me throughout my career. I also thank my committee members, Dr. Cristina Takacs-Vesbach and Dr. Robert Miller, for their valuable recommendations pertaining to this study and assistance in my path of growth throughout this masters.