Occurrence and Diversity of Insect-Associated Fungi in Natural Soils in China
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Clonostachys Saulensis (Bionectriaceae, Hypocreales), a New Species from French Guiana
Clonostachys saulensis (Bionectriaceae, Hypocreales), a new species from French Guiana Christian LECHAT Abstract: Clonostachys saulensis sp. nov. is described and illustrated based on a collection on bark of dead Jacques FOURNIER liana in French Guiana. this species is placed in Clonostachys (= Bionectria) based on its clonostachys-like Delphine CHADULI asexual morph, ascomata not changing colour in 3% Koh or lactic acid and phylogenetic comparison of itS Laurence LESAGE-MEESSEN sequences with known species of Clonostachys. Clonostachys saulensis is primarily characterized by non- stromatic, smooth, pale brown, globose ascomata coated with a whitish powdery scurf from base up to half Anne FAVEL height and turning blackish upon drying. Based on comparison of morphological characteristics of sexual- asexual morphs and molecular data with known species, C. saulensis is proposed as a new species. Ascomycete.org, 11 (3) : 65–68 Keywords: Ascomycota, ribosomal DnA, taxonomy. Mise en ligne le 08/05/2019 10.25664/ART-0260 Résumé : Clonostachys saulensis sp. nov. est décrite et illustrée d’après une récolte effectuée sur écorce de liane morte en Guyane française. cette espèce est placée dans le genre Clonostachys (= Bionectria) d’après sa forme asexuée de type clonostachys, les ascomes ne changeant pas de couleur dans Koh à 3% ou dans l’acide lactique et la comparaison phylogénétique des séquences itS avec les espèces connues de Clonos- tachys. Clonostachys saulensis est principalement caractérisée par des ascomes globuleux, sans stroma, brun pâle, couverts d’une pellicule poudreuse blanchâtre de la base jusqu’à la moitié de la hauteur, devenant noi- râtres en séchant. en se fondant sur la comparaison des caractères morphologiques et des données molé- culaires avec les espèces connues, C. -
Illuminating Type Collections of Nectriaceous Fungi in Saccardo's
Persoonia 45, 2020: 221–249 ISSN (Online) 1878-9080 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE https://doi.org/10.3767/persoonia.2020.45.09 Illuminating type collections of nectriaceous fungi in Saccardo’s fungarium N. Forin1, A. Vizzini 2,3,*, S. Nigris1,4, E. Ercole2, S. Voyron2,3, M. Girlanda2,3, B. Baldan1,4,* Key words Abstract Specimens of Nectria spp. and Nectriella rufofusca were obtained from the fungarium of Pier Andrea Saccardo, and investigated via a morphological and molecular approach based on MiSeq technology. ITS1 and ancient DNA ITS2 sequences were successfully obtained from 24 specimens identified as ‘Nectria’ sensu Saccardo (including Ascomycota 20 types) and from the type specimen of Nectriella rufofusca. For Nectria ambigua, N. radians and N. tjibodensis Hypocreales only the ITS1 sequence was recovered. On the basis of morphological and molecular analyses new nomenclatural Illumina combinations for Nectria albofimbriata, N. ambigua, N. ambigua var. pallens, N. granuligera, N. peziza subsp. ribosomal sequences reyesiana, N. radians, N. squamuligera, N. tjibodensis and new synonymies for N. congesta, N. flageoletiana, Sordariomycetes N. phyllostachydis, N. sordescens and N. tjibodensis var. crebrior are proposed. Furthermore, the current classifi- cation is confirmed for Nectria coronata, N. cyanostoma, N. dolichospora, N. illudens, N. leucotricha, N. mantuana, N. raripila and Nectriella rufofusca. This is the first time that these more than 100-yr-old specimens are subjected to molecular analysis, thereby providing important new DNA sequence data authentic for these names. Article info Received: 25 June 2020; Accepted: 21 September 2020; Published: 23 November 2020. INTRODUCTION to orange or brown perithecia which do not change colour in 3 % potassium hydroxide (KOH) or 100 % lactic acid (LA) Nectria, typified with N. -
On the Relationships of Paecilomyces Sect. Isarioidea Species1
Mycol. Res. 109 (5): 581–589 (May 2005). f The British Mycological Society 581 doi:10.1017/S0953756205002741 Printed in the United Kingdom. On the relationships of Paecilomyces sect. Isarioidea species1 J. Jennifer LUANGSA-ARD1,2, Nigel L. HYWEL-JONES1, Leka MANOCH2 and Robert A. SAMSON2,3* 1 BIOTEC, NSTDA Science Park, 113 Paholyothin Road, Khlong 1, Khlong Luang, Pathum Thani, Thailand. 2 Department of Plant Pathology, Faculty of Agriculture, Kasetsart University, Bangkok 10900, Thailand. 3 Centraalbureau voor Schimmelcultures, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. E-mail : [email protected] Received 21 May 2004; accepted 14 February 2005. Phylogenetic relationships of Paecilomyces sect. Isarioidea species were analysed using the b-tubulin gene and ITS rDNA. Maximum parsimony analyses showed that the section does not form a natural taxonomic group and is polyphyletic within the Hypocreales. However, a group was recognized, designated as the Isaria clade, to be monophyletic comprising of the following Paecilomyces species: P. amoeneroseus, P. cateniannulatus, P. cateniobliquus, P. cicadae, P. coleopterorus, P. farinosus, P. fumosoroseus, P. ghanensis, P. javanicus and P. tenuipes. Some of these species have teleomorphs in Cordyceps. INTRODUCTION species from our current work and focus on species accepted to be within the Hypocreales. The work pres- The genus Paecilomyces as conceived by Bainier (1907) ented here aimed to determine if an entomogenous is only monophyletic within the order Eurotiales when habit for sect. Isarioidea is a monophyletic character- characterised by a Byssochlamys teleomorph using an istic within the Hypocreales. With a view to considering 18S phylogeny (Luangsa-ard, Hywel-Jones & Samson whether the genus name Isaria should be resurrected 2004). -
Effects of Sugars and Salt on the Production of Glycosphingolipids in Mariannaea Elegans
Trace Nutrients Research 31 : 37−44(2014) Original Article Effects of Sugars and Salt on the Production of Glycosphingolipids in Mariannaea Elegans 1, 2) 1) 1, 2) 1, †) Yasushi Tani , Yasunori Yamashita , Shigeki Saito and Hisaaki Mihara 1)Department of Biotechnology, College of Life Sciences, Ritsumeikan University * , 2)Ritsumeikan Global Innovation Research Organization, Ritsumeikan University * Summary Glycosphingolipids (GSLs) are complex macromolecules in cell membranes that play important roles in various bio- logical processes. Fungi contain several types of GSLs that are distinct from those of mammals, but little is known about their physiological functions, metabolic regulation, or biosynthetic pathways. Most fungal species that possess fungal neogala-series GSLs (FNG-GSLs) are resistant to aureobasidin A (AbA), an antifungal agent that inhibits glyco- sylinositolphosphoceramide (GIPC) synthesis. We have previously reported that Mariannaea elegans has FNG-GSLs in its cell membrane, despite the fact that it is sensitive to AbA. In this study, we demonstrated that M. elegans contains GIPCs, which explains its sensitivity to AbA. We also found that both cell growth and GSL composition of M. elegans were affected by the presence or absence of different sugars in the culture medium. In contrast, sugars had no effect on the phenotypes and GSLs of AbA-resistant Rhizopus sp. lacking GIPCs. Further analysis revealed that FNG-GSL production can be modulated by the addition of 600 mM NaCl in a glucose-containing medium. Fi- nally, sodium dodecyl sulfate-polyacrylamide gel electrophoresis analysis of Golgi proteins from M. elegans showed that at least nine proteins were present exclusively in cells producing FNG-GSL, suggesting that those proteins are potential candidates for FNG-GSL synthesis. -
(Hypocreales) Proposed for Acceptance Or Rejection
IMA FUNGUS · VOLUME 4 · no 1: 41–51 doi:10.5598/imafungus.2013.04.01.05 Genera in Bionectriaceae, Hypocreaceae, and Nectriaceae (Hypocreales) ARTICLE proposed for acceptance or rejection Amy Y. Rossman1, Keith A. Seifert2, Gary J. Samuels3, Andrew M. Minnis4, Hans-Josef Schroers5, Lorenzo Lombard6, Pedro W. Crous6, Kadri Põldmaa7, Paul F. Cannon8, Richard C. Summerbell9, David M. Geiser10, Wen-ying Zhuang11, Yuuri Hirooka12, Cesar Herrera13, Catalina Salgado-Salazar13, and Priscila Chaverri13 1Systematic Mycology & Microbiology Laboratory, USDA-ARS, Beltsville, Maryland 20705, USA; corresponding author e-mail: Amy.Rossman@ ars.usda.gov 2Biodiversity (Mycology), Eastern Cereal and Oilseed Research Centre, Agriculture & Agri-Food Canada, Ottawa, ON K1A 0C6, Canada 3321 Hedgehog Mt. Rd., Deering, NH 03244, USA 4Center for Forest Mycology Research, Northern Research Station, USDA-U.S. Forest Service, One Gifford Pincheot Dr., Madison, WI 53726, USA 5Agricultural Institute of Slovenia, Hacquetova 17, 1000 Ljubljana, Slovenia 6CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands 7Institute of Ecology and Earth Sciences and Natural History Museum, University of Tartu, Vanemuise 46, 51014 Tartu, Estonia 8Jodrell Laboratory, Royal Botanic Gardens, Kew, Surrey TW9 3AB, UK 9Sporometrics, Inc., 219 Dufferin Street, Suite 20C, Toronto, Ontario, Canada M6K 1Y9 10Department of Plant Pathology and Environmental Microbiology, 121 Buckhout Laboratory, The Pennsylvania State University, University Park, PA 16802 USA 11State -
An Overview of the Taxonomy, Phylogeny, and Typification of Nectriaceous Fungi in Cosmospora, Acremonium, Fusarium, Stilbella, and Volutella
available online at www.studiesinmycology.org StudieS in Mycology 68: 79–113. 2011. doi:10.3114/sim.2011.68.04 An overview of the taxonomy, phylogeny, and typification of nectriaceous fungi in Cosmospora, Acremonium, Fusarium, Stilbella, and Volutella T. Gräfenhan1, 4*, H.-J. Schroers2, H.I. Nirenberg3 and K.A. Seifert1 1Eastern Cereal and Oilseed Research Centre, Biodiversity (Mycology and Botany), 960 Carling Ave., Ottawa, Ontario, K1A 0C6, Canada; 2Agricultural Institute of Slovenia, 1000 Ljubljana, Slovenia; 3Julius-Kühn-Institute, Institute for Epidemiology and Pathogen Diagnostics, Königin-Luise-Str. 19, D-14195 Berlin, Germany; 4Current address: Grain Research Laboratory, Canadian Grain Commission, 1404-303 Main Street, Winnipeg, Manitoba, R3C 3G8, Canada *Correspondence: [email protected] Abstract: A comprehensive phylogenetic reassessment of the ascomycete genus Cosmospora (Hypocreales, Nectriaceae) is undertaken using fresh isolates and historical strains, sequences of two protein encoding genes, the second largest subunit of RNA polymerase II (rpb2), and a new phylogenetic marker, the larger subunit of ATP citrate lyase (acl1). The result is an extensive revision of taxonomic concepts, typification, and nomenclatural details of many anamorph- and teleomorph-typified genera of theNectriaceae, most notably Cosmospora and Fusarium. The combined phylogenetic analysis shows that the present concept of Fusarium is not monophyletic and that the genus divides into two large groups, one basal in the family, the other terminal, separated by a large group of species classified in genera such as Calonectria, Neonectria, and Volutella. All accepted genera received high statistical support in the phylogenetic analyses. Preliminary polythetic morphological descriptions are presented for each genus, providing details of perithecia, micro- and/or macro-conidial synanamorphs, cultural characters, and ecological traits. -
Bionectria Pseudochroleuca, a New Host Record on Prunus Sp. in Northern Thailand
Studies in Fungi 5(1): 358–367 (2020) www.studiesinfungi.org ISSN 2465-4973 Article Doi 10.5943/sif/5/1/17 Bionectria pseudochroleuca, a new host record on Prunus sp. in northern Thailand Huanraluek N1, Jayawardena RS1,2, Aluthmuhandiram JVS 1, 2,3, Chethana KWT1,2 and Hyde KD1,2,4* 1Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 2School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand 3Institute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, People’s Republic of China 4Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, China Huanraluek N, Jayawardena RS, Aluthmuhandiram JVS, Chethana KWT, Hyde KD 2020 – Bionectria pseudochroleuca, a new host record on Prunus sp. in northern Thailand. Studies in Fungi 5(1), 358–367, Doi 10.5943/sif/5/1/17 Abstract This study presents the first report of Bionectria pseudochroleuca (Bionectriaceae) on Prunus sp. (Rosaceae) from northern Thailand, based on both morphological characteristics and multilocus phylogenetic analyses of internal transcribe spacer (ITS) and Beta-tubulin (TUB2). Key words – Bionectriaceae – Clonostachys – Hypocreales – Nectria – Prunus spp. – Sakura Introduction Bionectriaceae are commonly found in soil, on woody substrates and on other fungi (Rossman et al. 1999, Schroers 2001). Bionectria is a member of Bionectriaceae (Rossman et al. 2013, Maharachchikumbura et al. 2015, 2016) and is distinct from other genera in the family as it has characteristic ascospores and ascus morphology, but none of these are consistently found in all Bionectria species (Schroers 2001). Some species of this genus such as B. -
What If Esca Disease of Grapevine Were Not a Fungal Disease?
Fungal Diversity (2012) 54:51–67 DOI 10.1007/s13225-012-0171-z What if esca disease of grapevine were not a fungal disease? Valérie Hofstetter & Bart Buyck & Daniel Croll & Olivier Viret & Arnaud Couloux & Katia Gindro Received: 20 March 2012 /Accepted: 1 April 2012 /Published online: 24 April 2012 # The Author(s) 2012. This article is published with open access at Springerlink.com Abstract Esca disease, which attacks the wood of grape- healthy and diseased adult plants and presumed esca patho- vine, has become increasingly devastating during the past gens were widespread and occurred in similar frequencies in three decades and represents today a major concern in all both plant types. Pioneer esca-associated fungi are not trans- wine-producing countries. This disease is attributed to a mitted from adult to nursery plants through the grafting group of systematically diverse fungi that are considered process. Consequently the presumed esca-associated fungal to be latent pathogens, however, this has not been conclu- pathogens are most likely saprobes decaying already senes- sively established. This study presents the first in-depth cent or dead wood resulting from intensive pruning, frost or comparison between the mycota of healthy and diseased other mecanical injuries as grafting. The cause of esca plants taken from the same vineyard to determine which disease therefore remains elusive and requires well execu- fungi become invasive when foliar symptoms of esca ap- tive scientific study. These results question the assumed pear. An unprecedented high fungal diversity, 158 species, pathogenicity of fungi in other diseases of plants or animals is here reported exclusively from grapevine wood in a single where identical mycota are retrieved from both diseased and Swiss vineyard plot. -
Oncorhynchus Mykiss) Liam T
University of New Mexico UNM Digital Repository Biology ETDs Electronic Theses and Dissertations 7-1-2014 The microbiome of rainbow trout (Oncorhynchus mykiss) Liam T. Lowrey Follow this and additional works at: https://digitalrepository.unm.edu/biol_etds Recommended Citation Lowrey, Liam T.. "The microbiome of rainbow trout (Oncorhynchus mykiss)." (2014). https://digitalrepository.unm.edu/biol_etds/ 73 This Thesis is brought to you for free and open access by the Electronic Theses and Dissertations at UNM Digital Repository. It has been accepted for inclusion in Biology ETDs by an authorized administrator of UNM Digital Repository. For more information, please contact [email protected]. Liam Lowrey Candidate UNM Department of Biology Department This thesis is approved, and it is acceptable in quality and form for publication: Approved by the Thesis Committee: Dr. Irene Salinas , Chairperson Dr. Cristina Takacs-Vesbach Dr. Robert Miller i The microbiome of rainbow trout (Oncorhynchus mykiss) by LIAM T. LOWREY B.A., BIOLOGY, UNIVERSITY OF NEW MEXICO, 2011 THESIS Submitted in Partial Fulfillment of the Requirements for the Degree of Masters of Science Biology The University of New Mexico Albuquerque, New Mexico July, 2014 ii ACKNOWLEDGMENTS I gratefully acknowledge Irene Salinas, my advisor and thesis chair, for continuing to encourage me through all the ups and downs, the failures and accomplishments, and the vast amounts of time she spent helping to write the chapters. Her guidance and passion for science will continue to guide me throughout my career. I also thank my committee members, Dr. Cristina Takacs-Vesbach and Dr. Robert Miller, for their valuable recommendations pertaining to this study and assistance in my path of growth throughout this masters. -
Evaluation of Fungal Endophytes to Biological Control of Dothistroma Needle Blight on Pinus Nigra Subsp
Наукові праці Лісівничої академії наук України, 2019, вип. 19 ем акад ія на а ук ч У и к н р Наукові праці Лісівничої академії наук України ів а с ї і н и Л Proceedings of the Forestry Academy of sciences of Ukraine http://fasu.nltu.edu.ua IssN 1991-606Х print https://doi.org/10.15421/411924 IssN 2616-5015 online Article received 2019.07.14 @ Correspondence author Article accepted 2019.12.26 Kateryna Davydenko Forestry Academy of Sciences [email protected] of Ukraine Pushkinska str., 86, Kharkiv, 61024, Ukraine UDK 630.4 Evaluation of fungal endophytes to biological control of Dothistroma needle blight on Pinus nigra subsp. pallasiana (Crimean pine) K. Davydenko1 Dothistroma needle blight (DNB), caused by Dothistroma septosporum and Dothistroma pini, is the most important forest disease of pine in many countries. This disease has recently emerged in Ukraine as a major threat to mostly Pinus nigra subsp. pallasiana and less to Scots pine. There is increasing evidence that some fungal and bacterial isolates can reduce the growth and pathogenicity of fungal plant pathogens. In this research, infected needles were collected from 30-year-old Crimean pine (P. nigra subsp. pallasiana) in four locations in Southern Ukraine. In total, 244 of endophytic fungi were recovered from needles of Crimean pine during summer sampling of the host’s microbiome in Ukraine in 2012-2014. Dothistroma spp. were detected using fungal isolation and species-specific priming PCR techniques. Among all endophytes, eight fungal species were selected based on the commonness of their occurrence in the foliage of the host and their antagonistic activity. -
A Worldwide List of Endophytic Fungi with Notes on Ecology and Diversity
Mycosphere 10(1): 798–1079 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/19 A worldwide list of endophytic fungi with notes on ecology and diversity Rashmi M, Kushveer JS and Sarma VV* Fungal Biotechnology Lab, Department of Biotechnology, School of Life Sciences, Pondicherry University, Kalapet, Pondicherry 605014, Puducherry, India Rashmi M, Kushveer JS, Sarma VV 2019 – A worldwide list of endophytic fungi with notes on ecology and diversity. Mycosphere 10(1), 798–1079, Doi 10.5943/mycosphere/10/1/19 Abstract Endophytic fungi are symptomless internal inhabits of plant tissues. They are implicated in the production of antibiotic and other compounds of therapeutic importance. Ecologically they provide several benefits to plants, including protection from plant pathogens. There have been numerous studies on the biodiversity and ecology of endophytic fungi. Some taxa dominate and occur frequently when compared to others due to adaptations or capabilities to produce different primary and secondary metabolites. It is therefore of interest to examine different fungal species and major taxonomic groups to which these fungi belong for bioactive compound production. In the present paper a list of endophytes based on the available literature is reported. More than 800 genera have been reported worldwide. Dominant genera are Alternaria, Aspergillus, Colletotrichum, Fusarium, Penicillium, and Phoma. Most endophyte studies have been on angiosperms followed by gymnosperms. Among the different substrates, leaf endophytes have been studied and analyzed in more detail when compared to other parts. Most investigations are from Asian countries such as China, India, European countries such as Germany, Spain and the UK in addition to major contributions from Brazil and the USA. -
Comparative Analysis of Mitochondrial Genome Features Among Four Clonostachys Species and Insight Into Their Systematic Positions in the Order Hypocreales
International Journal of Molecular Sciences Article Comparative Analysis of Mitochondrial Genome Features among Four Clonostachys Species and Insight into Their Systematic Positions in the Order Hypocreales Zhiyuan Zhao 1,2,†, Kongfu Zhu 2,†, Dexiang Tang 2, Yuanbing Wang 2, Yao Wang 2, Guodong Zhang 2, Yupeng Geng 1,* and Hong Yu 1,2,* 1 College of Ecology and Environmental Sciences, Yunnan University, Kunming 650091, China; [email protected] 2 The International Joint Research Center for Sustainable Utilization of Cordyceps Bioresources in China and Southeast Asia, Yunnan University, Kunming 650091, China; [email protected] (K.Z.); [email protected] (D.T.); [email protected] (Y.W.); [email protected] (Y.W.); [email protected] (G.Z.) * Correspondence: [email protected] (Y.G.); [email protected] (H.Y.) † Equally contributed to this work. Abstract: The mycoparasite fungi of Clonostachys have contributed to the biological control of plant fungal disease and nematodes. The Clonostachys fungi strains were isolated from Ophiocordyceps high- landensis, Ophiocordyceps nigrolla and soil, which identified as Clonostachys compactiuscula, Clonostachys rogersoniana, Clonostachys solani and Clonostachys sp. To explore the evolutionary relationship between the mentioned species, the mitochondrial genomes of four Clonostachys species were sequenced and assembled. The four mitogenomes consisted of complete circular DNA molecules, with the total sizes Citation: Zhao, Z.; Zhu, K.; Tang, D.; ranging from 27,410 bp to 42,075 bp. The GC contents, GC skews and AT skews of the mitogenomes Wang, Y.; Wang, Y.; Zhang, G.; Geng, varied considerably. Mitogenomic synteny analysis indicated that these mitogenomes underwent Y.; Yu, H.