Cellular Iron Homeostasis
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Elucidation of Protein Interactions and the Re-Tuning of Porphyrin Electronics for Hydroxylases
University of South Carolina Scholar Commons Theses and Dissertations 2017 Elucidation Of Protein Interactions And The Re- Tuning Of Porphyrin Electronics For Hydroxylases Steven Charles Ratigan University of South Carolina Follow this and additional works at: https://scholarcommons.sc.edu/etd Part of the Chemistry Commons Recommended Citation Ratigan, S. C.(2017). Elucidation Of Protein Interactions And The Re-Tuning Of Porphyrin Electronics For Hydroxylases. (Doctoral dissertation). Retrieved from https://scholarcommons.sc.edu/etd/4482 This Open Access Dissertation is brought to you by Scholar Commons. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. ELUCIDATION OF PROTEIN INTERACTIONS AND THE RE-TUNING OF PORPHYRIN ELECTRONICS FOR HYDROXYLASES by Steven Charles Ratigan Bachelor of Arts The Citadel, 2005 Bachelor of Science University of South Carolina, 2009 Master of Arts The Citadel, 2012 Submitted in Partial Fulfillment of the Requirements For the Degree of Doctor of Philosophy in Chemistry College of Arts and Sciences University of South Carolina 2017 Accepted by: Thomas Makris, Major Professor F. Wayne Outten, Committee Member John Lavigne, Committee Member Zhengqing Fu, Committee Member Cheryl L. Addy, Vice Provost and Dean of the Graduate School © Copyright by Steven Charles Ratigan, 2017 All Rights Reserved. ii DEDICATION I dedicate this work to my family, who have always been there for me. Without their support, my time in academia would have been much more difficult. I would also like to thank Dr. David Donnell of The Citadel Dept. of Biology for teaching me everything I know about molecular biology, which proved to be a huge help early on in this program. -
Corynebacterium Glutamicum Mycoredoxin 3 Protects Against Multiple Oxidative Stresses
Advance Publication J. Gen. Appl. Microbiol. doi 10.2323/jgam.2019.10.003 ©2020 Applied Microbiology, Molecular and Cellular Biosciences Research Foundation Full Paper 1 Corynebacterium glutamicum Mycoredoxin 3 protects against multiple oxidative stresses 2 and displays thioredoxin-like activity 3 (Received September 24, 2019; Accepted October 28, 2019; J-STAGE Advance publication date: October 30, 2020) 4 Tao Su#, Chengchuan Che#, Ping Sun, Xiaona Li, Zhijin Gong, Jinfeng Liu, Ge Yang * 5 6 College of Life Sciences, Qufu Normal University, Qufu, Shandong 273165, China; 7 8 Running title: Feature of C. glutamicum mycoredoxin 3 9 10 11 # These authors contributed equally to this work. 12 13 * Corresponding authors: 14 Ge Yang 15 16 E-mail [email protected] 17 Tel: 86-13953760056 18 19 20 21 22 23 24 25 26 27 Abstract 28 Glutaredoxins (Grxs) and thioredoxins (Trxs) play a critical role in resistance to oxidative 29 conditions. However, physiological and biochemical roles of Mycoredoxin 3 (Mrx3) that shared a 30 high amino acid sequence similarity to Grxs remain unknown in Corynebacterium glutamicum. 31 Here we showed that mrx3 deletion strains of C. glutamicum was involved in the protection 32 against oxidative stress. Recombinant Mrx3 not only catalytically reduced the disulfide bonds in 33 ribonucleotide reductase (RNR), insulin and 5, 5’-dithiobis-(2-nitro-benzoicacid) (DTNB), but 34 also reduced the mixed disulphides between mycothiol (MSH) and substrate, which was 35 exclusively linked to the thioredoxin reductase (TrxR) electron transfer pathway by a dithiol 36 mechanism. Site-directed mutagenesis confirmed that the conserved Cys17 and Cys20 in Mrx3 37 were necessary to maintain its activity. -
Generate Metabolic Map Poster
Authors: Peter D. Karp Suzanne Paley Julio Collado-Vides John L Ingraham Ingrid Keseler Markus Krummenacker Cesar Bonavides-Martinez Robert Gunsalus An online version of this diagram is available at BioCyc.org. Biosynthetic pathways are positioned in the left of the cytoplasm, degradative pathways on the right, and reactions not assigned to any pathway are in the far right of the cytoplasm. Transporters and membrane proteins are shown on the membrane. Carol Fulcher Ian Paulsen Socorro Gama-Castro Robert LaRossa Periplasmic (where appropriate) and extracellular reactions and proteins may also be shown. Pathways are colored according to their cellular function. EcoCyc: Escherichia coli K-12 substr. MG1655 Cellular Overview Connections between pathways are omitted for legibility. Anamika Kothari Amanda Mackie Alberto Santos-Zavaleta succinate phosphate succinate N-acetyl-DL-methionine + L-ornithine glutathione + L-methionine S-oxide D-fructofuranose γ Ag+ molybdate ferroheme b L,L-homocystine asp lys cys L-alanyl- -D- D-mannopyranose 6-phosphate 2+ 2+ H D-methionine 2-deoxy-D-glucose succinate formate formate succinate D-tartrate putrescine agmatine cadaverine L-tartrate D-fructofuranose 6-phosphate + nitrate nitrate Cu thiosulfate deoxycholate L,L-homocystine D-cystine D-cycloserine methyl β-D-glucoside putrescine asp spermidine (S)-2-hydroxybutanoate (S)-2-hydroxybutanoate arg L-homoserine lactone magnesium hydrogenphosphate magnesium hydrogenphosphate antimonous acid glutamyl-meso- Co2+ Cd2+ lactulose poly-β-1,6- met cob(I)inamide 2,3-dioxo- -
Impaired Lysosomal Acidification Triggers Iron Deficiency And
RESEARCH ARTICLE Impaired lysosomal acidification triggers iron deficiency and inflammation in vivo King Faisal Yambire1, Christine Rostosky2, Takashi Watanabe3, David Pacheu-Grau1, Sylvia Torres-Odio4, Angela Sanchez-Guerrero1,2, Ola Senderovich5, Esther G Meyron-Holtz5, Ira Milosevic2, Jens Frahm3, A Phillip West4, Nuno Raimundo1* 1Institute of Cellular Biochemistry, University Medical Center Goettingen, Goettingen, Germany; 2European Neuroscience Institute, a Joint Initiative of the Max-Planck Institute and of the University Medical Center Goettingen, Goettingen, Germany; 3Biomedizinische NMR, Max-Planck Institute for Biophysical Chemistry, Goettingen, Germany; 4Department of Microbial Pathogenesis and Immunology, Texas A&M University Health Science Center, Austin, United States; 5Faculty of Biotechnology and Food Engineering, Technion Israel Institute of Technology, Haifa, Israel Abstract Lysosomal acidification is a key feature of healthy cells. Inability to maintain lysosomal acidic pH is associated with aging and neurodegenerative diseases. However, the mechanisms elicited by impaired lysosomal acidification remain poorly understood. We show here that inhibition of lysosomal acidification triggers cellular iron deficiency, which results in impaired mitochondrial function and non-apoptotic cell death. These effects are recovered by supplying iron via a lysosome-independent pathway. Notably, iron deficiency is sufficient to trigger inflammatory signaling in cultured primary neurons. Using a mouse model of impaired lysosomal acidification, we observed a robust iron deficiency response in the brain, verified by in vivo magnetic resonance *For correspondence: imaging. Furthermore, the brains of these mice present a pervasive inflammatory signature [email protected] associated with instability of mitochondrial DNA (mtDNA), both corrected by supplementation of goettingen.de the mice diet with iron. Our results highlight a novel mechanism linking impaired lysosomal Competing interests: The acidification, mitochondrial malfunction and inflammation in vivo. -
Effect of Genotype on Micronutrient Absorption and Metabolism: a Review of Iron, Copper, Iodine and Selenium, and Folates Richard Mithen
Int. J. Vitam. Nutr. Res., 77 (3), 2007, 205–216 Effect of Genotype on Micronutrient Absorption and Metabolism: a Review of Iron, Copper, Iodine and Selenium, and Folates Richard Mithen Institute of Food Research, Colney Lane, Norwich, NR4 7UA, UK Received for publication: July 28, 2006 Abstract: For the majority of micronutrients, there are very little data, or none at all, on the role of genetic poly- morphisms on their absorption and metabolism. In many cases, the elucidation of biochemical pathways and regulators of homeostatic mechanisms have come from studies of individuals that have mutations in certain genes. Other polymorphisms in these genes that result in a less severe phenotype may be important in determining the natural range of variation in absorption and metabolism that is commonly observed. To illustrate some of these aspects, I briefly review the increased understanding of iron metabolism that has arisen from our knowledge of the effects of mutations in several genes, the role of genetic variation in mediating the nutritional effects of io- dine and selenium, and finally, the interaction between a genetic polymorphism in folate metabolism and folic acid fortification. Key words: Micronutrients, genetic polymorphisms, iron, iodine, selenium, folates Introduction the interpretation of epidemiological studies, in which some of the variation observed in nutrient status or re- Recently there has been considerable interest in the role quirement may be due to genetic variation at a few or sev- that genetic polymorphisms may play in several aspects eral loci that determine the uptake and metabolism of var- of human nutrition, and the ill-defined terms nutrige- ious nutrients. -
The Role of Intermembrane Space Redox Factors in Glutathione Metabolism and Intracellular Redox Equilibrium Hatice Kubra Ozer University of South Carolina
University of South Carolina Scholar Commons Theses and Dissertations 2015 The Role of Intermembrane Space Redox Factors In Glutathione Metabolism And Intracellular Redox Equilibrium Hatice Kubra Ozer University of South carolina Follow this and additional works at: https://scholarcommons.sc.edu/etd Part of the Chemistry Commons Recommended Citation Ozer, H. K.(2015). The Role of Intermembrane Space Redox Factors In Glutathione Metabolism And Intracellular Redox Equilibrium. (Doctoral dissertation). Retrieved from https://scholarcommons.sc.edu/etd/3702 This Open Access Dissertation is brought to you by Scholar Commons. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. THE ROLE OF INTERMEMBRANE SPACE REDOX FACTORS IN GLUTATHIONE METABOLISM AND INTRACELLULAR REDOX EQUILIBRIUM by Hatice Kubra Ozer Bachelor of Science Uludag University, 2004 Master of Food Science and Nutrition Clemson University, 2010 Submitted in Partial Fulfillment of the Requirements For the Degree of Doctor of Philosophy in Chemistry College of Arts and Sciences University of South Carolina 2015 Accepted by: Caryn E. Outten, Major Professor F. Wayne Outten, Committee Chair Erin Connolly, Committee Member Andrew B. Greytak, Committee Member Lacy K. Ford, Senior Vice Provost and Dean of Graduate Studies © Copyright by Hatice Kubra Ozer, 2015 All Rights Reserved. ii ACKNOWLEDGEMENTS First, I would like to thank my advisor, Dr. Caryn E. Outten for her patience, guidance, expertise, and confidence in me to complete the work contained herein. She has been an excellent mentor during my graduate program. She is also the only person beside myself who is guaranteed to have read every word of this manuscript and to review every presentations in the past and her insight was irreplaceable. -
Role of GSH and Iron-Sulfur Glutaredoxins in Iron Metabolism—Review
molecules Review Role of GSH and Iron-Sulfur Glutaredoxins in Iron Metabolism—Review 1, 1, 1 1 Trnka Daniel y , Hossain Md Faruq y , Jordt Laura Magdalena , Gellert Manuela and Lillig Christopher Horst 2,* 1 Institute for Medical Biochemistry and Molecular Biology, University Medicine, University of Greifswald, 17475 Greifswald, Germany; [email protected] (T.D.); [email protected] (H.M.F.); [email protected] (J.L.M.); [email protected] (G.M.) 2 Christopher Horst Lillig, Institute for Medical Biochemistry and Molecular Biology, University Medicine Greifswald, Ferdinand-Sauerbruch-Straße, 17475 Greifswald, Germany * Correspondence: [email protected]; Tel.: +49-3834-865407; Fax: +49-3834-865402 These authors contributed equally to this work. y Academic Editor: Pál Perjési Received: 29 July 2020; Accepted: 22 August 2020; Published: 25 August 2020 Abstract: Glutathione (GSH) was initially identified and characterized for its redox properties and later for its contributions to detoxification reactions. Over the past decade, however, the essential contributions of glutathione to cellular iron metabolism have come more and more into focus. GSH is indispensable in mitochondrial iron-sulfur (FeS) cluster biosynthesis, primarily by co-ligating FeS clusters as a cofactor of the CGFS-type (class II) glutaredoxins (Grxs). GSH is required for the export of the yet to be defined FeS precursor from the mitochondria to the cytosol. In the cytosol, it is an essential cofactor, again of the multi-domain CGFS-type Grxs, master players in cellular iron and FeS trafficking. In this review, we summarize the recent advances and progress in this field. The most urgent open questions are discussed, such as the role of GSH in the export of FeS precursors from mitochondria, the physiological roles of the CGFS-type Grx interactions with BolA-like proteins and the cluster transfer between Grxs and recipient proteins. -
The Nature of O2 Activation by the Ethylene-Forming Enzyme 1-Aminocyclopropane-1-Carboxylic Acid Oxidase
The nature of O2 activation by the ethylene-forming enzyme 1-aminocyclopropane-1-carboxylic acid oxidase Liviu M. Mirica and Judith P. Klinman* Departments of Chemistry and Molecular and Cell Biology, University of California, Berkeley, CA 94720 Contributed by Judith P. Klinman, December 10, 2007 (sent for review November 15, 2007) Ethylene is a plant hormone important in many aspects of plant studied extensively, and it generally is accepted that O2 activation growth and development such as germination, fruit ripening, and at the iron center is linked to oxidative decarboxylation of the senescence. 1-Aminocyclopropane-1-carboxylic acid (ACC) oxidase ␣KG, ultimately forming an FeIVAO species as the reactive (ACCO), an O2-activating ascorbate-dependent nonheme iron en- intermediate (14–17). This high-valent Fe/O2 species functions zyme, catalyzes the last step in ethylene biosynthesis. The O2 as a ‘‘generic’’ oxidant for a wide range of oxidation/oxygenation activation process by ACCO was investigated using steady-state reactions. kinetics, solvent isotope effects (SIEs), and competitive oxygen In contrast to the ␣KG-dependent enzymes, where ␣KG kinetic isotope effects (18O KIEs) to provide insights into the nature rather than substrate binds to the metal center, spectroscopic of the activated oxygen species formed at the active-site iron studies of ACCO have shown that ACC coordinates to the iron center and its dependence on ascorbic acid. The observed large 18O center via both its amino and carboxylate groups (10, 18).† This -KIE of 1.0215 ؎ 0.0005 strongly supports a rate-determining step finding implies a distinctly different mode for reductant inter formation of an FeIVAO species, which acts as the reactive inter- action with ACCO than for most other nonheme iron enzymes. -
Biochemical and Biophysical Characterization of a Mycoredoxin
International Journal of Biological Macromolecules 107 (2018) 1999–2007 Contents lists available at ScienceDirect International Journal of Biological Macromolecules j ournal homepage: www.elsevier.com/locate/ijbiomac Biochemical and biophysical characterization of a mycoredoxin protein glutaredoxin A1 from Corynebacterium pseudotuberculosis a a a b a Raphael J. Eberle , Liege A. Kawai , Fabio R. de Moraes , Ljubica Tasic , Raghuvir K. Arni , a,∗ Monika A. Coronado a Multiuser Center for Biomolecular Innovation, Departament of Physics, Instituto de Biociências Letras e Ciências Exatas (Ibilce), Universidade Estadual Paulista (UNESP), São Jose do Rio Preto, SP, 15054-000, Brazil b Institute of Chemistry, University of Campinas (UNICAMP), Campinas, SP, 13083-970, Brazil a r t i c l e i n f o a b s t r a c t Article history: Glutaredoxin A1 from Corynebacterium pseudotuberculosis was shown to be a mycoredoxin protein. In Received 25 July 2017 this study, we established a process to overexpress and purify glutaredoxin A1. The aim of this study Received in revised form 6 October 2017 was the investigation of the Glutaredoxin A1 from C. pseudotuberculosis behavior under different redox Accepted 11 October 2017 environments and the identification of lead molecules, which can be used for specific inhibitor develop- Available online 16 October 2017 ment for this protein family. A quantitative assay was performed measuring the rate of insulin reduction spectrophotometrically at 640 nm through turbidity formation from the precipitation of the free insulin. Keywords: Glutaredoxin A1, at 5 M concentration, accelerated the reduction process of 0.2 mM insulin and 1 mM Corynebacterium pseudotuberculosis Glutaredoxin DTT. -
Small-Molecule Binding Sites to Explore New Targets in the Cancer Proteome
Electronic Supplementary Material (ESI) for Molecular BioSystems. This journal is © The Royal Society of Chemistry 2016 Small-molecule binding sites to explore new targets in the cancer proteome David Xu, Shadia I. Jalal, George W. Sledge Jr., and Samy O. Meroueh* Supplementary Text Druggable Binding Sites across all 10 Diseases. Using the previously established cutoffs, we identified genes that were overexpressed across multiple cancer types and featured druggable binding sites. We ranked these genes based on the total number of tumors that overexpressed the gene (Fig. S1). Using a simple PubMed query, we then counted the number of articles in which either the gene symbol or gene name was co-mentioned with the term ‘cancer’. Most of the most frequently occurring differentially-expressed genes correspond to proteins of well- established cancer targets. Among them are matrix metalloproteinases (MMPs), including MMP1, MMP9, and MMP12, which are implicated in tumor invasion and metastasis (1). There are several protein kinases, including TTK, AURKA, AURKB, and PLK1, that are involved in cell signaling and well-established oncology targets (2). Some genes among this list that have not been extensively studied nor targeted in cancer. These include the serine/threonine kinase PKMYT1 (MYT1) is a regulator of G2/M transition in the cell cycle, but lacks focused small molecule inhibitors that specifically target the kinase. Recent efforts in developing small molecule inhibitors involve repurposing of available kinase inhibitors to specifically target the kinase (3). A subunit of the GINS complex GINS2 (PSF2) is involved in cell proliferation and survival in cancer cell lines (4,5). -
PDF, Evaluation of Ceruloplasmin Ferroxidase Activity and Lipid Profiles
Journal of Physics: Conference Series PAPER • OPEN ACCESS Evaluation of Ceruloplasmin ferroxidase activity and lipid profiles in patients with Valvular heart diseases To cite this article: H K Sacheat et al 2021 J. Phys.: Conf. Ser. 1879 022066 View the article online for updates and enhancements. This content was downloaded from IP address 170.106.202.126 on 24/09/2021 at 22:30 Ibn Al-Haitham International Conference for Pure and Applied Sciences (IHICPS) IOP Publishing Journal of Physics: Conference Series 1879 (2021) 022066 doi:10.1088/1742-6596/1879/2/022066 Evaluation of Ceruloplasmin ferroxidase activity and lipid profiles in patients with Valvular heart diseases H K Sacheat1, S Z Hussein1*and S S Al-Mudhaffar2 1 Department of Chemistry, College of Sciences, University of Baghdad 2 Ibn Al-Bitar Specialized Cardiac Surgery Centre / Baghdad - Iraq *E.mail : [email protected] Abstract. One of the major health problems causing defects or damage to one or more of the four heart valves [aortic, mitral, pulmonary, and tricuspid] is valvular heart disease [VHD]; it occurs due to congenital abnormalities or acquired pathology. It is a defect that results in weak heart valves and is therefore unable to function as precise pathways of the blood. The aim of the current study was to evaluate the ferroxidase activity of ceruloplasmin (Cp) and the lipid profile of valvular heart disease patients in sera. Ninety subjects were included in this study and 60 patients with HDV were divided into two subgroups according to the affected valve: 33 patients with aortic valve disease (AV) and 27 patients with mitral valve disease (MV group). -
Fragment of Human Ceruloplasmin (Protein Structure/Ferroxidase/Copper Binding/Genetic Polymorphism/Evolution) I
Proc. Natl. Acad. Sci. USA Vol. 76, No. 4, pp. 1668-1672, April 1979 Biochemistry Complete amino acid sequence of a histidine-rich proteolytic fragment of human ceruloplasmin (protein structure/ferroxidase/copper binding/genetic polymorphism/evolution) I. BARRY KINGSTON*, BRIONY L. KINGSTONt, AND FRANK W. PUTNAMt Department of Biology, Indiana University, Bloomington, Indiana 47405 Contributed by Frank W. Putnam, January 22, 1979 ABSTRACT The complete amino acid sequence has been a chain of human ceruloplasmin studied by McCombs and determined for a fragment of human ceruloplasmin [ferroxidase; Bowman (6) and probably corresponds to the a subunit pro- iron(II)oxygen oxidoreductase, EC 1.16.3.1]. The fragment posed by Simons and Bearn (4) and the chain of (designated Cp F5) contains 159 amino acid residues and has light Freeman a molecular weight of 18,650; it lacks carbohydrate, is rich in and Daniel (5). histidine, and contains one free cysteine that may be part of a The relation of Cp F5 to the structure of the intact cerulo- copper-binding site. This fragment is present in most commer- plasmin chain has to be deduced from indirect observations cial preparations of ceruloplasmin, probably owing to proteo- because of the small amount of single-chain ceruloplasmin lytic degradation, but can also be obtained by limited cleavage available to us and the strong interaction of the fragments. From of single-chain ceruloplasmin with plasmin. Cp F5 probably is the kinetics of the proteolytic cleavage of intact ceruloplasmin an intact domain attached to the COOH-terminal end of sin- gle-chain ceruloplasmin via a labile interdomain peptide bond.