Mapping Mammalian Cell-Type-Specific Transcriptional
ORIGINAL RESEARCH published: 18 November 2015 doi: 10.3389/fgene.2015.00331 Mapping Mammalian Cell-type-specific Transcriptional Regulatory Networks Using KD-CAGE and ChIP-seq Data in the TC-YIK Cell Line Marina Lizio 1, 2, Yuri Ishizu 1, 2, Masayoshi Itoh 1, 2, 3, Timo Lassmann 1, 2, 4, Akira Hasegawa 1, 2, Atsutaka Kubosaki 1, Jessica Severin 1, 2, Hideya Kawaji 1, 2, 3, Yukio Nakamura 5, the FANTOM consortium 1, Harukazu Suzuki 1, 2, Yoshihide Hayashizaki 1, 3, Piero Carninci 1, 2 and Alistair R. R. Forrest 1, 2, 6* 1 RIKEN Center for Life Science Technologies, Yokohama, Japan, 2 Division of Genomic Technologies, RIKEN Center for Life Science Technologies, Yokohama, Japan, 3 RIKEN Preventive Medicine and Diagnosis Innovation Program, Yokohama, Edited by: Japan, 4 Telethon Kids Institute, The University of Western Australia, Subiaco, WA, Australia, 5 Cell Engineering Division, Edgar Wingender, RIKEN BioResource Center, Ibaraki, Japan, 6 QEII Medical Centre and Centre for Medical Research, Harry Perkins Institute of The University Medical Center Medical Research, The University of Western Australia, Nedlands, WA, Australia Göttingen, Germany Reviewed by: Mikael Boden, Mammals are composed of hundreds of different cell types with specialized functions. The University of Queensland, Each of these cellular phenotypes are controlled by different combinations of Australia transcription factors. Using a human non islet cell insulinoma cell line (TC-YIK) which Ka-Chun Wong, City University of Hong Kong, China expresses insulin and the majority of known pancreatic beta cell specific genes *Correspondence: as an example, we describe a general approach to identify key cell-type-specific Alistair R.
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