Rapid Transformation of Orchid Floras James D. Ackerman
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Phylogeny, Character Evolution and the Systematics of Psilochilus (Triphoreae)
THE PRIMITIVE EPIDENDROIDEAE (ORCHIDACEAE): PHYLOGENY, CHARACTER EVOLUTION AND THE SYSTEMATICS OF PSILOCHILUS (TRIPHOREAE) A Dissertation Presented in Partial Fulfillment of the Requirements for The Degree Doctor of Philosophy in the Graduate School of the Ohio State University By Erik Paul Rothacker, M.Sc. ***** The Ohio State University 2007 Doctoral Dissertation Committee: Approved by Dr. John V. Freudenstein, Adviser Dr. John Wenzel ________________________________ Dr. Andrea Wolfe Adviser Evolution, Ecology and Organismal Biology Graduate Program COPYRIGHT ERIK PAUL ROTHACKER 2007 ABSTRACT Considering the significance of the basal Epidendroideae in understanding patterns of morphological evolution within the subfamily, it is surprising that no fully resolved hypothesis of historical relationships has been presented for these orchids. This is the first study to improve both taxon and character sampling. The phylogenetic study of the basal Epidendroideae consisted of two components, molecular and morphological. A molecular phylogeny using three loci representing each of the plant genomes including gap characters is presented for the basal Epidendroideae. Here we find Neottieae sister to Palmorchis at the base of the Epidendroideae, followed by Triphoreae. Tropidieae and Sobralieae form a clade, however the relationship between these, Nervilieae and the advanced Epidendroids has not been resolved. A morphological matrix of 40 taxa and 30 characters was constructed and a phylogenetic analysis was performed. The results support many of the traditional views of tribal composition, but do not fully resolve relationships among many of the tribes. A robust hypothesis of relationships is presented based on the results of a total evidence analysis using three molecular loci, gap characters and morphology. Palmorchis is placed at the base of the tree, sister to Neottieae, followed successively by Triphoreae sister to Epipogium, then Sobralieae. -
E29695d2fc942b3642b5dc68ca
ISSN 1409-3871 VOL. 9, No. 1—2 AUGUST 2009 Orchids and orchidology in Central America: 500 years of history CARLOS OSSENBACH INTERNATIONAL JOURNAL ON ORCHIDOLOGY LANKESTERIANA INTERNATIONAL JOURNAL ON ORCHIDOLOGY Copyright © 2009 Lankester Botanical Garden, University of Costa Rica Effective publication date: August 30, 2009 Layout: Jardín Botánico Lankester. Cover: Chichiltic tepetlauxochitl (Laelia speciosa), from Francisco Hernández, Rerum Medicarum Novae Hispaniae Thesaurus, Rome, Jacobus Mascardus, 1628. Printer: Litografía Ediciones Sanabria S.A. Printed copies: 500 Printed in Costa Rica / Impreso en Costa Rica R Lankesteriana / International Journal on Orchidology No. 1 (2001)-- . -- San José, Costa Rica: Editorial Universidad de Costa Rica, 2001-- v. ISSN-1409-3871 1. Botánica - Publicaciones periódicas, 2. Publicaciones periódicas costarricenses LANKESTERIANA i TABLE OF CONTENTS Introduction 1 Geographical and historical scope of this study 1 Political history of Central America 3 Central America: biodiversity and phytogeography 7 Orchids in the prehispanic period 10 The area of influence of the Chibcha culture 10 The northern region of Central America before the Spanish conquest 11 Orchids in the cultures of Mayas and Aztecs 15 The history of Vanilla 16 From the Codex Badianus to Carl von Linné 26 The Codex Badianus 26 The expedition of Francisco Hernández to New Spain (1570-1577) 26 A new dark age 28 The “English American” — the journey through Mexico and Central America of Thomas Gage (1625-1637) 31 The renaissance of science -
Dating the Origin of the Orchidaceae from a Fossil Orchid with Its Pollinator
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/6111228 Dating the origin of the Orchidaceae from a fossil orchid with its pollinator Article in Nature · September 2007 DOI: 10.1038/nature06039 · Source: PubMed CITATIONS READS 211 770 5 authors, including: Santiago R Ramírez Barbara Gravendeel University of California, Davis Leiden University, Naturalis Biodiversity Center & University of Applied Sciences L… 50 PUBLICATIONS 999 CITATIONS 208 PUBLICATIONS 2,081 CITATIONS SEE PROFILE SEE PROFILE Rodrigo B. Singer Naomi E Pierce Universidade Federal do Rio Grande do Sul Harvard University 109 PUBLICATIONS 1,381 CITATIONS 555 PUBLICATIONS 6,496 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Insect endosymbiont diversity View project Support threatened research Institutions from Southern Brazil (Rio Grande do Sul) View project All content following this page was uploaded by Barbara Gravendeel on 31 May 2014. The user has requested enhancement of the downloaded file. Vol 448 | 30 August 2007 | doi:10.1038/nature06039 LETTERS Dating the origin of the Orchidaceae from a fossil orchid with its pollinator Santiago R. Ramı´rez1, Barbara Gravendeel2, Rodrigo B. Singer3, Charles R. Marshall1,4 & Naomi E. Pierce1 Since the time of Darwin1, evolutionary biologists have been fas- subfamily showed that the size, shape and ornamentation of the cinated by the spectacular adaptations to insect pollination exhib- fossil closely resemble those of modern members of the subtribe ited by orchids. However, despite being the most diverse plant Goodyerinae, particularly the genera Kreodanthus and Microchilus family on Earth2, the Orchidaceae lack a definitive fossil record (Supplementary Table 1). -
Diversity of Orchid Root-Associated Fungi in Montane Forest of Southern Ecuador and Impact of Environmental Factors on Community Composition
Faculté des bioingénieurs Earth and Life Institute Pole of Applied Microbiology Laboratory of Mycology Diversity of orchid root-associated fungi in montane forest of Southern Ecuador and impact of environmental factors on community composition Thèse de doctorat présentée par Stefania Cevallos Solórzano en vue de l'obtention du grade de Docteur en Sciences agronomiques et ingénierie biologique Promoteurs: Prof. Stéphane Declerck (UCL, Belgium) Prof. Juan Pablo Suárez Chacón (UTPL, Ecuador) Members du Jury: Prof. Bruno Delvaux (UCL, Belgium), Président du Jury Dr. Cony Decock (UCL, Belgium) Prof. Gabriel Castillo Cabello (ULg, Belgium) Prof. Renate Wesselingh (UCL, Belgium) Prof. Jan Colpaert (University Hasselt, Belgium) Louvain -La-Neuve, July 2018 Acknowledgments I want to thank my supervisor Prof. Stéphane Declerck for his supervision, the constructive comments and the engagement throughout the process to accomplish this PhD. I would like to express my special gratitude to Prof. Juan Pablo Suárez Chacón for have gave me the opportunity to be part of the PIC project funded by Federation Wallonia-Brussels. But also thank you for his patience, support and encouragement. Thanks also to the Federation Wallonia-Brussels, through the Académie de Recherche et d’Enseignement Supérieur (ARES) Wallonie- Bruxelles for the grant to develop my doctoral formation. Furthermore, I would like to thank all members of the laboratory of mycology and MUCL and to the people of “Departamento de Ciencias Biológicas” at UTPL, who directly or indirectly contributed with my PhD thesis. But especially, I am grateful to Alberto Mendoza for his contribution in the sampling process. I am especially grateful to Dr. Aminael Sánchez Rodríguez and MSc. -
Differing Life-History Strategies of Two Mycoheterotrophic Orchid Species Associated with Leaf Litter- and Wood-Decaying Fungi
diversity Article Differing Life-History Strategies of Two Mycoheterotrophic Orchid Species Associated with Leaf Litter- and Wood-Decaying Fungi Yuki Ogura-Tsujita 1,2,* , Kenshi Tetsuka 3, Shuichiro Tagane 4, Miho Kubota 1, Shuichiro Anan 1, Yumi Yamashita 5 , Koichi Tone 6 and Tomohisa Yukawa 5 1 Faculty of Agriculture, Saga University, 1 Honjyo-machi, Saga 840-8502, Japan; [email protected] (M.K.); [email protected] (S.A.) 2 The United Graduate School of Agricultural Sciences, Kagoshima University, 1-21-24 Korimoto, Kagoshima 890-8580, Japan 3 Yakushima Evergreen Broad-Leaved Forest Network, Isso, Yakushima-machi, Kumage-gun, Kagoshima 891-4203, Japan; [email protected] 4 The Kagoshima University Museum, 1-21-30 Korimoto, Kagoshima 890-0065, Japan; [email protected] 5 Tsukuba Botanical Garden, National Museum of Nature and Science, 4-1-1 Amakubo, Tsukuba, Ibaraki 305-0005, Japan; [email protected] (Y.Y.); [email protected] (T.Y.) 6 Okinawa Municipal Museum, 2-19-6 Uechi, Okinawa 904-0031, Japan; [email protected] * Correspondence: [email protected] Abstract: Mycoheterotrophic orchids depend completely on mycorrhizal fungi for their supply of carbon. The life-history traits of mycoheterotrophic plants (MHPs) can differ according to the characteristics of the associated mycorrhizal fungi. We compared the life-history strategies of two Citation: Ogura-Tsujita, Y.; Tetsuka, mycoheterotrophic orchids associated with wood- and leaf litter-decaying fungi over a maximum K.; Tagane, S.; Kubota, M.; Anan, S.; of six years of field monitoring. Seventy percent of the aboveground stems of Erythrorchis altissima, Yamashita, Y.; Tone, K.; Yukawa, T. -
A New Orchid Genus, Danxiaorchis, and Phylogenetic Analysis of the Tribe Calypsoeae
A New Orchid Genus, Danxiaorchis, and Phylogenetic Analysis of the Tribe Calypsoeae Jun-Wen Zhai1,2,3, Guo-Qiang Zhang2,8, Li-Jun Chen2, Xin-Ju Xiao2, Ke-Wei Liu2,7, Wen-Chieh Tsai4,Yu- Yun Hsiao4, Huai-Zhen Tian5, Jia-Qiang Zhu6, Mei-Na Wang2, Fa-Guo Wang1, Fu-Wu Xing1*, Zhong- Jian Liu2,7,8,9* 1 South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China, 2 Shenzhen Key Laboratory for Orchid Conservation and Utilization, The National Orchid Conservation Center of China and The Orchid Conservation and Research Center of Shenzhen, Shenzhen, China, 3 Graduate University of Chinese Academy of Sciences, Beijing, China, 4 Institute of Tropical Plant Sciences and Orchid Research Center, National Cheng Kung University, Tainan City, Taiwan, 5 School of Life Science, East China Normal University, Shanghai, China, 6 Information Center of Renhua County, Shaoguan, China, 7 Center for Biotechnology and BioMedicine, Graduate School at Shenzhen, Tsinghua University, Shenzhen, China, 8 Landscape College of Fujian Agriculture and Forestry University, Fuzhou, China, 9 College of Forestry, South China Agricultural University, Guangzhou, China Abstract Background: Orchids have numerous species, and their speciation rates are presumed to be exceptionally high, suggesting that orchids are continuously and actively evolving. The wide diversity of orchids has attracted the interest of evolutionary biologists. In this study, a new orchid was discovered on Danxia Mountain in Guangdong, China. However, the phylogenetic clarification of this new orchid requires further molecular, morphological, and phytogeographic analyses. Methodology/Principal Findings: A new orchid possesses a labellum with a large Y-shaped callus and two sacs at the base, and cylindrical, fleshy seeds, which make it distinct from all known orchid genera. -
Ancestral State Reconstruction of the Mycorrhizal Association for the Last Common Ancestor of Embryophyta, Given the Different Phylogenetic Constraints
Supplementary information Supplementary Figures Figure S1 | Ancestral state reconstruction of the mycorrhizal association for the last common ancestor of Embryophyta, given the different phylogenetic constraints. Pie charts show the likelihood of the ancestral states for the MRCA of Embryophyta for each phylogenetic hypothesis shown below. Letters represent mycorrhizal associations: (A) Ascomycota; (B) Basidiomycota; (G) Glomeromycotina; (M) Mucoromycotina; (-) Non-mycorrhizal. Combinations of letters represent a combination of mycorrhizal associations. Austrocedrus chilensis Chamaecyparis obtusa Sequoiadendron giganteum Prumnopitys taxifolia Prumnopitys Prumnopitys montana Prumnopitys Prumnopitys ferruginea Prumnopitys Araucaria angustifolia Araucaria Dacrycarpus dacrydioides Dacrycarpus Taxus baccata Podocarpus oleifolius Podocarpus Afrocarpus falcatus Afrocarpus Ephedra fragilis Nymphaea alba Nymphaea Gnetum gnemon Abies alba Abies balsamea Austrobaileya scandens Austrobaileya Abies nordmanniana Thalictrum minus Thalictrum Abies homolepis Caltha palustris Caltha Abies magnifica ia repens Ranunculus Abies religiosa Ranunculus montanus Ranunculus Clematis vitalba Clematis Keteleeria davidiana Anemone patens Anemone Tsuga canadensis Vitis vinifera Vitis Tsuga mertensiana Saxifraga oppositifolia Saxifraga Larix decidua Hypericum maculatum Hypericum Larix gmelinii Phyllanthus calycinus Phyllanthus Larix kaempferi Hieronyma oblonga Hieronyma Pseudotsuga menziesii Salix reinii Salix Picea abies Salix polaris Salix Picea crassifolia Salix herbacea -
Bibliografía Botánica Del Caribe I
Consolidated bibliography Introduction To facilitate the search through the bibliographies prepared by T. Zanoni (Bibliographía botánica del Caribe, Bibliografía de la flora y de la vegetatíon de la isla Española, and the Bibliography of Carribean Botany series currently published in the Flora of Greater Antilles Newsletter), the html versions of these files have been put together in a single pdf file. The reader should note the coverage of each bibliography: Hispaniola is exhaustively covered by all three bibliographies (from the origin up to now) while other areas of the Carribean are specifically treated only since 1984. Please note that this pdf document is made from multiple documents, this means that search function is called by SHIFT+CTRL+F (rather than by CTRL+F). Please let me know of any problem. M. Dubé The Jardín Botánico Nacional "Dr. Rafael M. Moscoso," Santo Domingo, Dominican Republic, publishers of the journal Moscosoa, kindly gave permission for the inclusion of these bibliographies on this web site. Please note the present address of T. Zanoni : New York Botanical Garden 200th Street at Southern Blvd. Bronx, NY 10458-5126, USA email: [email protected] Moscosoa 4, 1986, pp. 49-53 BIBLIOGRAFÍA BOTÁNICA DEL CARIBE. 1. Thomas A. Zanoni Zanoni. Thomas A. (Jardín Botánico Nacional, Apartado 21-9, Santo Domingo, República Dominicana). Bibliografía botánica del Caribe. 1. Moscosoa 4: 49-53. 1986. Una bibliografía anotada sobre la literatura botánica publicada en los años de 1984 y 1985. Se incluyen los temas de botánica general y la ecología de las plantas de las islas del Caribe. An annotated bibliography of the botanical literature published in 1984 and 1985, covering all aspects of botany and plant ecology of the plants of the Caribbean Islands. -
Jahresberichte Des Naturwissenschaftlichen Vereins
11 . Wuppertaler Orchideen-Tagung am 4. und 5. Oktober 1997 Titelbild: l<pipm/i.c nfiicrruu, Ruwenzon 1 Uganda, 27.01.1994, fot. Robatscli Hefi 5 1 Redaktion: Karlheinz Senghas und Uwe Lünsmann Wuppertal 1998 Herausgegeben am 15. September 1998 Inhaltsverzeichnis Programm der 11. Wuppertaler Orchideen-Tagung am 4. und 5. Oktober 1997........... .6 Teilnehmerliste der 11. Wuppertaler Orchideen-Tagung ...............................................8 U. &D. R~CKBRODT:Auf Orchideensuche im südliche Kaukasus.. ......................13 J. CLAESSENS & J. KLEYNEN: Die Säulchenstruktur der europäischen Orchideen...................................................................................................... 23 K. ROBATSCH: Die Gattung Epipactis und ihre systematische Stellung innerhalb der Unterfamilie Neottioideae im Lichte entwicklungs- geschichtlicher Untersuchungen.................................................................. .43 0.SCHALL: Natura 2000 - Umsetzung der F-F-H-Richtlinie in der EU .................,101 H. BAUMANN & S. KÜNKELE: Die Orchideen in der neuen Flora: "Die Farn- und BlütenpflanzenBaden-Württembergs".............................. 11 3 K. & R. LORENZ: Zum Stand der Orchideenkartierung Südtirols. Ein Beitrag zur "Kartierung der Flora Mitteleuropas" und zum OPTIMA-Projekt: "Kartiemg der mediterranen Orchideen". ...................124 L. BERNACKI: Die Verbreitung der Arten, Unterarten unfd Bastarde der OrchideengattungDactylorhiza in Polen ................................................... ,191 F. REINECKE: Wirkungsnetze -
Dating the Origin of the Orchidaceae from a Fossil Orchid with Its Pollinator”
doi: 10.1038/nature06039 SUPPLEMENTARY INFORMATION “Dating the origin of the Orchidaceae from a fossil orchid with its pollinator” Santiago R. Ramírez, Barbara Gravendeel, Rodrigo B. Singer, Charles R. Marshall, Naomi E. Pierce www.nature.com/nature 1 doi: 10.1038/nature06039 SUPPLEMENTARY INFORMATION 1. SUPPLEMENTARY FIGURE AND LEGEND Supplementary Figure 1. Molecular clock chronogram estimated via penalized likelihood using 50% Majority-Rule consensus topology (see Supplementary Methods) of the family Orchidaceae when using the oldest bound ages of fossil calibrations. Dashed branches subtend nodes with posterior probabilities below 0.95. Circles indicate age-constrained nodes. Out = Outgroups, Apo = Apostasioideae, Cyp = Cypripedioideae, Orc = Orchidoideae, Epi = Epidendroideae, H.epi = Higher Epidendroinds, Goo = Goodyerineae. www.nature.com/nature 2 doi: 10.1038/nature06039 SUPPLEMENTARY INFORMATION 2. SUPPLEMENTARY METHODS 1. Morphological character codes: Floral features 01. Column and lip* 0 : parallel 1 : perpendicular 02. Stigma†** 0 : protruded 1 : flat or slightly convex 03. Anther orientation†* 0 : erect 1 : bent Pollinaria 04. Caudicles† 0 : absent 1 : present 05. Hamulus stipe† 0 : absent 1 : present 06. Viscidium† 0 : none 1 : diffuse 2 : detachable 07. Viscidum shape 0 : pad-like 1 : elongated or U/V-shaped 08. Viscidium : pollinium ratio 0 : viscidium << pollinium 1 : viscidium ≅ pollinium 09. Tegula stipe† 0 : absent 1 : present www.nature.com/nature 3 doi: 10.1038/nature06039 SUPPLEMENTARY INFORMATION 10. Pollinium shape (dorsal profile) 0 : rhomboid 1 : clavate-obovoid 11. Pollinium orientation† 0 : juxtaposed 1 : superposed 12. Pollnium number† 0 : 2 1 : 4 2 : > 4 13. Pollinium texture† 0 : granular 1 : massulate Pollen micro-morphology 14. Massulae† 0 : absent 1 : present 15. -
Orchid Diversity in Anthropogenic-Induced Degraded Tropical Rainforest, an Extrapolation Towards Conservation
LANKESTERIANA 19(2): 107–124. 2019. doi: http://dx.doi.org/10.15517/lank.v19i2.38775 ORCHID DIVERSITY IN ANTHROPOGENIC-INDUCED DEGRADED TROPICAL RAINFOREST, AN EXTRAPOLATION TOWARDS CONSERVATION EDWARD E. BESI, DOME NIKONG, MUSKHAZLI MUSTAFA & RUSEA GO* Department of Biology, Faculty of Science, Universiti Putra Malaysia, 43400 Serdang, Selangor Darul Ehsan, Malaysia *Corresponding author: [email protected] ABSTRACT. The uncontrolled logging in Peninsular Malaysia and the resulting mudslides in the lowland areas have been perilous, not to just humans, but also to another biodiversity, including the wild orchids. Their survival in these highly depleted areas is being overlooked due to the inaccessible and harsh environment. This paper reports on the rescue of orchids at risk from the disturbed forests for ex-situ conservation, the identification of the diversity of orchids and the evaluation of the influence of micro-climatic changes induced by clear-cut logging towards the resilience of orchids in the flood-disturbed secondary forests and logged forests in Terengganu and Kelantan, located at the central region of Peninsular Malaysia, where the forest destruction by logging activities has been extensive. 109 orchid species belonging to 40 genera were collected from the disturbed areas. The diversity and data analyses show that the disturbed secondary forests had a higher orchid density (0.0133 plants/ m2) than the logged sites (0.0040 plants/m2) as the habitat conditions were more dependable. Nevertheless, the logged forests harboured a higher diversity of orchids (H=4.50 and D=0.99) of which 97.9% were epiphytes. Eleven rare species were found along with six species endemic to Peninsular Malaysia, with two species new to science. -
TELOPEA Publication Date: 13 October 1983 Til
Volume 2(4): 413–424 TELOPEA Publication Date: 13 October 1983 Til. Ro)'al BOTANIC GARDENS dx.doi.org/10.7751/telopea19834407 Journal of Plant Systematics 6 DOPII(liPi Tmst plantnet.rbgsyd.nsw.gov.au/Telopea • escholarship.usyd.edu.au/journals/index.php/TEL· ISSN 0312-9764 (Print) • ISSN 2200-4025 (Online) Telopea 2(4): 413-424, Figs 1-3 (1983) 413 CLASSIFICATION OF THE ORCHIDACEAE AND THEIR PROBABLE ORIGIN* R. L. DRESSLER (Accepted for publication 20.9.1982) ABSTRACT Dressler, R.L. (Smithsonian Tropical Research Institute, Apartado 2072, Balboa, Rep. of Panama) 1983. Classification of the Orchidaceae and their probable origin. Telopea 2(4): 413-424-Though we need much more data, especially on primitive orchids, increased knowledge is leading to a more natural classification. The Apostasioideae and Cypripedioideae, with 2 or 3 fertile anthers, are each amply distinct. The monandrous orchids with erect anther and soft pollen form 2 distinct groups: the Orchidoideae have the anther generally surpassing the rostellum, lack subsidiary cells, and most groups have root-stem tuberoids; while the Spiranthoideae have the rostellum subequal to the anther, often have mesoperigenous subsidiary cells, and lack root stem tuberoids. The Epidendroideae are the major phyletic group, about 80OJo of the family. They often have perigenous subsidiary cells, and members with soft pollen generally have the anther bending downward during development. The vandoid tribes do not show such clear ontogenetic bending, but current research on seed structure suggests that the vandoid level of evolution has arisen independently 3 or 4 times from different epidendroid groups, with much parallelism.