Acetone Rinsing - a Method for Testing Ecological and Physiological Roles of Secondary Compounds in Living Lichens
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Lichen Communities for Forest Health Monitoring in Colorado
Lichen Communities for Forest Health Monitoring in Colorado, USA A Report to the USDA Forest Service by Bruce McCune1, Paul Rogers2, Andrea Ruchty1, and Bruce Ryan3 29 June 1998 1Department of Botany and Plant Pathology, Cordley 2082, Oregon State University, Corvallis, OR 97331-2902. Phone: 541 737 1741, fax: 541 737 3573, email: [email protected] 2USDA Forest Service, Intermountain Research Station, 507 25th St., Ogden, UT 84401 3Department of Botany, Arizona State University, Tempe, AZ 85287-1601 CONTENTS Abstract ............................................................................................................... 1 Introduction........................................................................................................... 2 Lichens in the Forest Health Monitoring Program ................................................ 2 The Lichen Community Indicator ..................................................................... 2 Previous Work on Lichen Communities in Colorado............................................. 4 Methods ............................................................................................................... 4 Field Methods .............................................................................................. 4 Data Sources ............................................................................................... 5 Data Analysis............................................................................................... 6 The Analytical Data Set....................................................................... -
St Kilda Lichen Survey April 2014
A REPORT TO NATIONAL TRUST FOR SCOTLAND St Kilda Lichen Survey April 2014 Andy Acton, Brian Coppins, John Douglass & Steve Price Looking down to Village Bay, St. Kilda from Glacan Conachair Andy Acton [email protected] Brian Coppins [email protected] St. Kilda Lichen Survey Andy Acton, Brian Coppins, John Douglass, Steve Price Table of Contents 1 INTRODUCTION ............................................................................................................ 3 1.1 Background............................................................................................................. 3 1.2 Study areas............................................................................................................. 4 2 METHODOLOGY ........................................................................................................... 6 2.1 Field survey ............................................................................................................ 6 2.2 Data collation, laboratory work ................................................................................ 6 2.3 Ecological importance ............................................................................................. 7 2.4 Constraints ............................................................................................................. 7 3 RESULTS SUMMARY ................................................................................................... 8 4 MARITIME GRASSLAND (INCLUDING SWARDS DOMINATED BY PLANTAGO MARITIMA AND ARMERIA -
Insights Into the Ecology and Genetics of Lichens with a Cyanobacterial Photobiont
Insights into the Ecology and Genetics of Lichens with a Cyanobacterial Photobiont Katja Fedrowitz Faculty of Natural Resources and Agricultural Sciences Department of Ecology Uppsala Doctoral Thesis Swedish University of Agricultural Sciences Uppsala 2011 Acta Universitatis agriculturae Sueciae 2011:96 Cover: Lobaria pulmonaria, Nephroma bellum, and fallen bark in an old-growth forest in Finland with Populus tremula. Part of the tRNALeu (UAA) sequence in an alignment. (photos: K. Fedrowitz) ISSN 1652-6880 ISBN 978-91-576-7640-5 © 2011 Katja Fedrowitz, Uppsala Print: SLU Service/Repro, Uppsala 2011 Insights into the Ecology and Genetics of Lichens with a Cyanobacterial Photobiont Abstract Nature conservation requires an in-depth understanding of the ecological processes that influence species persistence in the different phases of a species life. In lichens, these phases comprise dispersal, establishment, and growth. This thesis aimed at increasing the knowledge on epiphytic cyanolichens by studying different aspects linked to these life stages, including species colonization extinction dynamics, survival and vitality of lichen transplants, and the genetic symbiont diversity in the genus Nephroma. Paper I reveals that local colonizations, stochastic, and deterministic extinctions occur in several epiphytic macrolichens. Species habitat-tracking metapopulation dynamics could partly be explained by habitat quality and size, spatial connectivity, and possibly facilitation by photobiont sharing. Simulations of species future persistence suggest stand-level extinction risk for some infrequent sexually dispersed species, especially when assuming low tree numbers and observed tree fall rates. Forestry practices influence the natural occurrence of species, and retention of trees at logging is one measure to maintain biodiversity. However, their long-term benefit for biodiversity is still discussed. -
Monitoring Air Quality in Class I Wilderness Areas of the Northeastern United States Using Lichens and Bryophytes Alison C
United States Department of Agriculture Monitoring Air Quality in Class I Wilderness Areas of the Northeastern United States Using Lichens and Bryophytes Alison C. Dibble, James W. Hinds, Ralph Perron, Natalie Cleavitt, Richard L. Poirot, and Linda H. Pardo Forest Service Northern Research Station General Technical Report NRS-165 December 2016 1 Abstract To address a need for air quality and lichen monitoring information for the Northeast, we compared bulk chemistry data from 2011-2013 to baseline surveys from 1988 and 1993 in three Class I Wilderness areas of New Hampshire and Vermont. Plots were within the White Mountain National Forest (Presidential Range—Dry River Wilderness and Great Gulf Wilderness, New Hampshire) and the Green Mountain National Forest (Lye Brook Wilderness, Vermont). We sampled epiphyte communities and found 58 macrolichen species and 55 bryophyte species. We also analyzed bulk samples for total N, total S, and 27 additional elements. We detected a decrease in Pb at the level of the National Forest and in a subset of plots. Low lichen richness and poor thallus condition at Lye Brook corresponded to higher N and S levels at these sites. Lichen thallus condition was best where lichen species richness was also high. Highest Hg content, from a limited subset, was on the east slope of Mt. Washington near the head of Great Gulf. Most dominant lichens in good condition were associated with conifer boles or acidic substrates. The status regarding N and S tolerance for many lichens in the northeastern United States is not clear, so the influence of N pollution on community data cannot be fully assessed. -
Lichens of Alaska's South Coast
United States Department of Agriculture Lichens of Alaska’s South Coast Forest Service R10-RG-190 Alaska Region Reprint April 2014 WHAT IS A LICHEN? Lichens are specialized fungi that “farm” algae as a food source. Unlike molds, mildews, and mushrooms that parasitize or scavenge food from other organisms, the fungus of a lichen cultivates tiny algae and / or blue-green bacteria (called cyanobacteria) within the fabric of interwoven fungal threads that form the body of the lichen (or thallus). The algae and cyanobacteria produce food for themselves and for the fungus by converting carbon dioxide and water into sugars using the sun’s energy (photosynthesis). Thus, a lichen is a combination of two or sometimes three organisms living together. Perhaps the most important contribution of the fungus is to provide a protective habitat for the algae or cyanobacteria. The green or blue-green photosynthetic layer is often visible between two white fungal layers if a piece of lichen thallus is torn off. Most lichen-forming fungi cannot exist without the photosynthetic partner because they have become dependent on them for survival. But in all cases, a fungus looks quite different in the lichenized form compared to its free-living form. HOW DO LICHENS REPRODUCE? Lichens sexually reproduce with fruiting bodies of various shapes and colors that can often look like miniature mushrooms. These are called apothecia (Fig. 1) and contain spores that germinate and Figure 1. Apothecia, fruiting grow into the fungus. Each bodies fungus must find the right photosynthetic partner in order to become a lichen. Lichens reproduce asexually in several ways. -
Habitat Quality and Disturbance Drive Lichen Species Richness in a Temperate Biodiversity Hotspot
Oecologia (2019) 190:445–457 https://doi.org/10.1007/s00442-019-04413-0 COMMUNITY ECOLOGY – ORIGINAL RESEARCH Habitat quality and disturbance drive lichen species richness in a temperate biodiversity hotspot Erin A. Tripp1,2 · James C. Lendemer3 · Christy M. McCain1,2 Received: 23 April 2018 / Accepted: 30 April 2019 / Published online: 15 May 2019 © Springer-Verlag GmbH Germany, part of Springer Nature 2019 Abstract The impacts of disturbance on biodiversity and distributions have been studied in many systems. Yet, comparatively less is known about how lichens–obligate symbiotic organisms–respond to disturbance. Successful establishment and development of lichens require a minimum of two compatible yet usually unrelated species to be present in an environment, suggesting disturbance might be particularly detrimental. To address this gap, we focused on lichens, which are obligate symbiotic organ- isms that function as hubs of trophic interactions. Our investigation was conducted in the southern Appalachian Mountains, USA. We conducted complete biodiversity inventories of lichens (all growth forms, reproductive modes, substrates) across 47, 1-ha plots to test classic models of responses to disturbance (e.g., linear, unimodal). Disturbance was quantifed in each plot using a standardized suite of habitat quality variables. We additionally quantifed woody plant diversity, forest density, rock density, as well as environmental factors (elevation, temperature, precipitation, net primary productivity, slope, aspect) and analyzed their impacts on lichen biodiversity. Our analyses recovered a strong, positive, linear relationship between lichen biodiversity and habitat quality: lower levels of disturbance correlate to higher species diversity. With few exceptions, additional variables failed to signifcantly explain variation in diversity among plots for the 509 total lichen species, but we caution that total variation in some of these variables was limited in our study area. -
A Review of Lichenology in Saint Lucia Including a Lichen Checklist
A REVIEW OF LICHENOLOGY IN SAINT LUCIA INCLUDING A LICHEN CHECKLIST HOWARD F. FOX1 AND MARIA L. CULLEN2 Abstract. The lichenological history of Saint Lucia is reviewed from published literature and catalogues of herbarium specimens. 238 lichens and 2 lichenicolous fungi are reported. Of these 145 species are known only from single localities in Saint Lucia. Important her- barium collections were made by Alexander Evans, Henry and Frederick Imshaug, Dag Øvstedal, Emmanuël Sérusiaux and the authors. Soufrière is the most surveyed botanical district for lichens. Keywords. Lichenology, Caribbean islands, tropical forest lichens, history of botany, Saint Lucia Saint Lucia is located at 14˚N and 61˚W in the Lesser had related that there were 693 collections by Imshaug from Antillean archipelago, which stretches from Anguilla in the Saint Lucia and that these specimens were catalogued online north to Grenada and Barbados in the south. The Caribbean (Johnson et al. 2005). An excursion was made by the authors Sea lies to the west and the Atlantic Ocean is to the east. The in April and May 2007 to collect and study lichens in Saint island has a land area of 616 km² (238 square miles). Lucia. The unpublished Imshaug field notebook referring to This paper presents a comprehensive checklist of lichens in the Saint Lucia expedition of 1963 was transcribed on a visit Saint Lucia, using new records, unpublished data, herbarium to MSC in September 2007. Loans of herbarium specimens specimens, online resources and published records. When were obtained for study from BG, MICH and MSC. These our study began in March 2007, Feuerer (2005) indicated 2 voucher specimens collected by Evans, Imshaug, Øvstedal species from Saint Lucia and Imshaug (1957) had reported 3 and the authors were examined with a stereoscope and a species. -
The Phylogeny of Plant and Animal Pathogens in the Ascomycota
Physiological and Molecular Plant Pathology (2001) 59, 165±187 doi:10.1006/pmpp.2001.0355, available online at http://www.idealibrary.com on MINI-REVIEW The phylogeny of plant and animal pathogens in the Ascomycota MARY L. BERBEE* Department of Botany, University of British Columbia, 6270 University Blvd, Vancouver, BC V6T 1Z4, Canada (Accepted for publication August 2001) What makes a fungus pathogenic? In this review, phylogenetic inference is used to speculate on the evolution of plant and animal pathogens in the fungal Phylum Ascomycota. A phylogeny is presented using 297 18S ribosomal DNA sequences from GenBank and it is shown that most known plant pathogens are concentrated in four classes in the Ascomycota. Animal pathogens are also concentrated, but in two ascomycete classes that contain few, if any, plant pathogens. Rather than appearing as a constant character of a class, the ability to cause disease in plants and animals was gained and lost repeatedly. The genes that code for some traits involved in pathogenicity or virulence have been cloned and characterized, and so the evolutionary relationships of a few of the genes for enzymes and toxins known to play roles in diseases were explored. In general, these genes are too narrowly distributed and too recent in origin to explain the broad patterns of origin of pathogens. Co-evolution could potentially be part of an explanation for phylogenetic patterns of pathogenesis. Robust phylogenies not only of the fungi, but also of host plants and animals are becoming available, allowing for critical analysis of the nature of co-evolutionary warfare. Host animals, particularly human hosts have had little obvious eect on fungal evolution and most cases of fungal disease in humans appear to represent an evolutionary dead end for the fungus. -
Lichens of East Limestone Island
Lichens of East Limestone Island Stu Crawford, May 2012 Platismatia Crumpled, messy-looking foliose lichens. This is a small genus, but the Pacific Northwest is a center of diversity for this genus. Out of the six species of Platismatia in North America, five are from the Pacific Northwest, and four are found in Haida Gwaii, all of which are on Limestone Island. Platismatia glauca (Ragbag lichen) This is the most common species of Platismatia, and is the only species that is widespread. In many areas, it is the most abundant lichen. Oddly, it is not the most abundant Platismatia on Limestone Island. It has soredia or isidia along the edges of its lobes, but not on the upper surface like P. norvegica. It also isn’t wrinkled like P. norvegica or P. lacunose. Platismatia norvegica It has large ridges or wrinkles on its surface. These ridges are covered in soredia or isidia, particularly close to the edges of the lobes. In the interior, it is restricted to old growth forests. It is less fussy in coastal rainforests, and really seems to like Limestone Island, where it is the most abundant Platismatia. Platismatia lacunosa (wrinkled rag lichen) This species also has large wrinkles on its surface, like P. norvegica. However, it doesn’t have soredia or isidia on top of these ridges. Instead, it has tiny black dots along the edges of its lobes which produce spores. It is also usually whiter than P. lacunosa. It is less common on Limestone Island. Platismatia herrei (tattered rag lichen) This species looks like P. -
Parmelia Barrenoae , a New Lichen Species Related to Parmelia Sulcata
The Lichenologist 37(1): 37–46 (2005) 2005 The British Lichen Society DOI: 10.1017/S0024282904014641 Printed in the United Kingdom Parmelia barrenoae, a new lichen species related to Parmelia sulcata (Parmeliaceae) based on molecular and morphological data Pradeep K. DIVAKAR, M. Carmen MOLINA, H. Thorsten LUMBSCH and Ana CRESPO Abstract: Parmelia barrenoae is described as new to science in the P. sulcata complex on the basis of morphological and molecular data. The new species is superficially similar to P. sulcata but differs in having simple rhizines whereas the other species of the complex have squarrose rhizines. Nuclear ITS rDNA and partial -tubulin gene sequences have been used as molecular markers. In the phylogenetic analysis, P. sulcata falls into four well supported clades, one of them corresponds to the morphotype that is described here as a new taxon. Six samples of the new taxon from different locations on the Iberian Peninsula form a strongly supported monophyletic group. Key words: Ascomycota, Bayesian inference, lichens, Parmelia, Parmelia barrenoae, Parmeliaceae, rhizines Introduction Parmelia sulcata is a very well known lichen species (with squarrose rhizines and Phylogenetic studies of some widely distrib- sorediate upper surface), reported from all uted lichen species in the Parmeliaceae have continents, including Antarctica. It occurs in shown that in many cases the morphological numerous ecotypes and is one of the most species concept does not coincide with common species in temperate Europe. In a monophyletic unit. Some traditionally Europe it is one of the principal lichens circumscribed species have been shown to recolonizing cities where atmospheric pollu- include several genetically isolated clades, tion has recently decreased (Hawksworth i.e. -
Piedmont Lichen Inventory
PIEDMONT LICHEN INVENTORY: BUILDING A LICHEN BIODIVERSITY BASELINE FOR THE PIEDMONT ECOREGION OF NORTH CAROLINA, USA By Gary B. Perlmutter B.S. Zoology, Humboldt State University, Arcata, CA 1991 A Thesis Submitted to the Staff of The North Carolina Botanical Garden University of North Carolina at Chapel Hill Advisor: Dr. Johnny Randall As Partial Fulfilment of the Requirements For the Certificate in Native Plant Studies 15 May 2009 Perlmutter – Piedmont Lichen Inventory Page 2 This Final Project, whose results are reported herein with sections also published in the scientific literature, is dedicated to Daniel G. Perlmutter, who urged that I return to academia. And to Theresa, Nichole and Dakota, for putting up with my passion in lichenology, which brought them from southern California to the Traingle of North Carolina. TABLE OF CONTENTS Introduction……………………………………………………………………………………….4 Chapter I: The North Carolina Lichen Checklist…………………………………………………7 Chapter II: Herbarium Surveys and Initiation of a New Lichen Collection in the University of North Carolina Herbarium (NCU)………………………………………………………..9 Chapter III: Preparatory Field Surveys I: Battle Park and Rock Cliff Farm……………………13 Chapter IV: Preparatory Field Surveys II: State Park Forays…………………………………..17 Chapter V: Lichen Biota of Mason Farm Biological Reserve………………………………….19 Chapter VI: Additional Piedmont Lichen Surveys: Uwharrie Mountains…………………...…22 Chapter VII: A Revised Lichen Inventory of North Carolina Piedmont …..…………………...23 Acknowledgements……………………………………………………………………………..72 Appendices………………………………………………………………………………….…..73 Perlmutter – Piedmont Lichen Inventory Page 4 INTRODUCTION Lichens are composite organisms, consisting of a fungus (the mycobiont) and a photosynthesising alga and/or cyanobacterium (the photobiont), which together make a life form that is distinct from either partner in isolation (Brodo et al. -
Me LBCHEN GENUS Nephromé EN NORTH and MIDDLE AMERICA
me LBCHEN GENUS NEPHROMé EN NORTH AND MIDDLE AMERICA Thom 50? NW Degree of M. S. MICHIGAI‘Q STATE UNIVERSITY Clifford Major Wetmore 1959 . , . ‘ 231:: A.“ 1. [B R .4 R Y I‘w‘likhiftin 9mm Unhxcrsity A A. THE LICHEN GENUS giggtggm IN NORTH AND MIDDLE AMERICA by Clifford Major Wetmore AN ABSTRACT Submitted to the College of Science and Arts of Michigan State University of Agriculture and Applied Science in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE Department of Botany and Plant Pathology 1959 Approved zazz:;L ‘é"_cézv"¢:;;“:? ABSTRACT This revision is based on a morphological, anatomical, and chemical study of 1,918 Specimens from twenty—one herbaria, as well as field work in Isle Royals National Park (Michigan), Haiti, and the Dominican Republic. The morphological and anatomical features are discussed in detail and twenty—nine original figures are included. The protuberances on the lower surface of g, resupiggfigg (L.) Ach. are corticate and, therefore, not true pseudo-eyphellae as often recorded in the literature. Eight lichen substances have been found in the genus: usnic acid, nephromin, zeorin, nephrin, and four unidentified neutral substances. These substances have taxonomic importance, although other workers in related genera have ignored them. The genus is placed in the Nephromaceae instead of the Peltigeraceae, where usually classified, because of the differences in ascus structure and development, conidial pros duction and the presence of a lower cortex in Neohroma, Seven species and two subspecies are recognized and a key for their identification is included along with a diagnosis, nomenclatural notes, and a distribution map for each species, Gyelnik's four new species and two new infraspecific taxa from North America are reduced to synonymy.