(12) United States Patent (10) Patent No.: US 8,148,067 B2 Lal Et Al

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(12) United States Patent (10) Patent No.: US 8,148,067 B2 Lal Et Al US008148067B2 (12) United States Patent (10) Patent No.: US 8,148,067 B2 Lal et al. (45) Date of Patent: Apr. 3, 2012 (54) METHODS FOR DIAGNOSING AND 5,219,727 A 6/1993 Wang et al. MONITORING THE STATUS OF SYSTEMC 5,264,351 A 1 1/1993 Harley 5,278,043 A 1/1994 Bannwarth et al. LUPUSERYTHEMATOSUS 5,310,652 A 5/1994 Gelfand et al. 5,314,809 A 5/1994 Erlich et al. (75) Inventors: Preeti G. Lal, Santa Clara, CA (US); 5,322,770 A 6/1994 Gelfand 5,340,720 A 8, 1994 Stetler Gavin E. Williams, Menlo Park, CA 5,346,994 A 9/1994 Chomczynski (US); Kirk E. Fry, Palo Alto, CA (US); 5,352,600 A 10, 1994 Gelfand et al. Jingtao Sun, Foster City, CA (US); 5,374,553 A 12/1994 Gelfand et al. Russel L. Dedrick, Kensington, CA 5,385,824 A 1/1995 Hoet et al. (US) 5,389,512 A 2/1995 Sninsky et al. 5,393,672 A 2f1995 Van Ness et al. 5,405,774 A 4, 1995 Abramson et al. 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(Continued) CI2O I/68 (2006.01) (52) U.S. Cl. ........................................ 435/6.1: 435/6.11 OTHER PUBLICATIONS (58) Field of Classification Search ........................ None See application file for complete search history. Extended European Search Report received for European Patent Application No. 0786 1283.5, mailed on Dec. 27, 2010, 17 pages. (56) References Cited Notice of Allowance received for U.S. Appl. No. 1 1/893,236, mailed on Dec. 10, 2010, 18 Pages. U.S. PATENT DOCUMENTS Non Final Office Action received for U.S. Appl. No. 12/628,168, 4,190.535 A 2f1980 Luderer et al. mailed on Dec. 10, 2010, 35 Pages. 4,215,051 A 7, 1980 Schroeder et al. Garraway et al., “Array-based approaches to cancer genome analy 4,350,593. A 9, 1982 Kessler sis'. 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Primary Examiner — James Martinell 4,800,159 A 1, 1989 Mullis et al. 4,818,418 A 4, 1989 Saunders (74) Attorney, Agent, or Firm — Morrison & Foerster LLP 4,843,155 A 6/1989 Chomczynski 4,889,818 A 12/1989 Gelfand et al. 4,908,318 A 3, 1990 Lerner (57) ABSTRACT 4.946,778 A 8, 1990 Ladner et al. 4.946,952 A 8, 1990 Kiefer The invention presents a method of diagnosing or monitoring 4,965,188 A 10, 1990 Mullis et al. the status of systemic lupus erythematosus (SLE) in a subject 5,053,134 A 10, 1991 Luderer et al. or patient comprising detecting the expression of all genes of 5,063,162 A 11, 1991 Kiefer 5,066,584 A 1 1/1991 Gyllensten et al. a diagnostic set in the Subject or patient wherein the diagnos 5,075.216 A 12/1991 Innis et al. tic set comprises two or more genes having expression cor 5,079,352 A 1/1992 Gelfand et al. related with the classification or status of SLE; and diagnos 5,091,310 A 2f1992 Innis ing or monitoring the status of SLE in the Subject or patient by 5, 120,525 A 6/1992 Goldenberg 5,142,033. 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