Pro-Aging Effects of Xanthine Oxidoreductase Products
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SCH 58261: a Potent and Selective Non-Xanthine A2A Adenosine Receptor Antagonist
22 DIRECTED DRUG DISCOVERY™ LIGAND-SETS™ for Assay Validation and High Throughput Screening Easy-to-use collections of pharmacologically-similar, small organic ligands Sigma-RBI LIGAND-SETS™ are a convenient and affordable way to screen a specific target with a collection of well- characterized, pharmacologically-active compounds. Each LIGAND-SET™ contains 40-80 high purity (>96%), small organic ligands arranged by pharmacological class in a 96-well format, one compound (2 mg) per well (1 ml capacity). N Standardize/validate new screening assays with well-characterized ligands N Guide secondary screening of larger, diverse libraries using pharmaceutically-relevant structures N Screen new drug targets for leads with pharmacologically-active compounds Nine different LIGAND-SETS™ are now available: N Adrenergics (Prod. No. L 0383) N Enzyme Inhibitors (Prod. No. L 6787) N Purines/Pyrimidines (Prod. No. L 2538) N Cholinergics (Prod. No. L 2663) N GABAergics (Prod. No. L 7884) N Glutamatergics (Prod. No. L 6537) N Dopaminergics (Prod. No. L 6412) N Ion Channel Modulators (Prod. No. L 6912) N Serotonergics (Prod. No. L 6662) For further information, please visit our Drug Discovery website at sigma-aldrich.com/drugdiscovery Technical information for each compound is provided in standard SD file format for use with ISIS/Base or other compatible software (software not provided). SCH 58261: A potent and selective non-xanthine A2A adenosine receptor antagonist Vol. 19 No. 4 Vol. Adenosine (Prod. No. A 9251) acts as a modulator of [3]. These results suggest a neuroprotective effect of this neuronal activity through its interaction with four receptor compound. In another study, the role of A1 and A2A subtypes referred to as A1, A2A, A2B and A3. -
Alternative Oxidase: a Mitochondrial Respiratory Pathway to Maintain Metabolic and Signaling Homeostasis During Abiotic and Biotic Stress in Plants
Int. J. Mol. Sci. 2013, 14, 6805-6847; doi:10.3390/ijms14046805 OPEN ACCESS International Journal of Molecular Sciences ISSN 1422-0067 www.mdpi.com/journal/ijms Review Alternative Oxidase: A Mitochondrial Respiratory Pathway to Maintain Metabolic and Signaling Homeostasis during Abiotic and Biotic Stress in Plants Greg C. Vanlerberghe Department of Biological Sciences and Department of Cell and Systems Biology, University of Toronto Scarborough, 1265 Military Trail, Toronto, ON, M1C1A4, Canada; E-Mail: [email protected]; Tel.: +1-416-208-2742; Fax: +1-416-287-7676 Received: 16 February 2013; in revised form: 8 March 2013 / Accepted: 12 March 2013 / Published: 26 March 2013 Abstract: Alternative oxidase (AOX) is a non-energy conserving terminal oxidase in the plant mitochondrial electron transport chain. While respiratory carbon oxidation pathways, electron transport, and ATP turnover are tightly coupled processes, AOX provides a means to relax this coupling, thus providing a degree of metabolic homeostasis to carbon and energy metabolism. Beside their role in primary metabolism, plant mitochondria also act as “signaling organelles”, able to influence processes such as nuclear gene expression. AOX activity can control the level of potential mitochondrial signaling molecules such as superoxide, nitric oxide and important redox couples. In this way, AOX also provides a degree of signaling homeostasis to the organelle. Evidence suggests that AOX function in metabolic and signaling homeostasis is particularly important during stress. These include abiotic stresses such as low temperature, drought, and nutrient deficiency, as well as biotic stresses such as bacterial infection. This review provides an introduction to the genetic and biochemical control of AOX respiration, as well as providing generalized examples of how AOX activity can provide metabolic and signaling homeostasis. -
Altered Expression and Function of Mitochondrial Я-Oxidation Enzymes
0031-3998/01/5001-0083 PEDIATRIC RESEARCH Vol. 50, No. 1, 2001 Copyright © 2001 International Pediatric Research Foundation, Inc. Printed in U.S.A. Altered Expression and Function of Mitochondrial -Oxidation Enzymes in Juvenile Intrauterine-Growth-Retarded Rat Skeletal Muscle ROBERT H. LANE, DAVID E. KELLEY, VLADIMIR H. RITOV, ANNA E. TSIRKA, AND ELISA M. GRUETZMACHER Department of Pediatrics, UCLA School of Medicine, Mattel Children’s Hospital at UCLA, Los Angeles, California 90095, U.S.A. [R.H.L.]; and Departments of Internal Medicine [D.E.K., V.H.R.] and Pediatrics [R.H.L., A.E.T., E.M.G.], University of Pittsburgh School of Medicine, Magee-Womens Research Institute, Pittsburgh, Pennsylvania 15213, U.S.A. ABSTRACT Uteroplacental insufficiency and subsequent intrauterine creased in IUGR skeletal muscle mitochondria, and isocitrate growth retardation (IUGR) affects postnatal metabolism. In ju- dehydrogenase activity was unchanged. Interestingly, skeletal venile rats, IUGR alters skeletal muscle mitochondrial gene muscle triglycerides were significantly increased in IUGR skel- expression and reduces mitochondrial NADϩ/NADH ratios, both etal muscle. We conclude that uteroplacental insufficiency alters of which affect -oxidation flux. We therefore hypothesized that IUGR skeletal muscle mitochondrial lipid metabolism, and we gene expression and function of mitochondrial -oxidation en- speculate that the changes observed in this study play a role in zymes would be altered in juvenile IUGR skeletal muscle. To test the long-term morbidity associated with IUGR. (Pediatr Res 50: this hypothesis, mRNA levels of five key mitochondrial enzymes 83–90, 2001) (carnitine palmitoyltransferase I, trifunctional protein of -oxi- dation, uncoupling protein-3, isocitrate dehydrogenase, and mi- Abbreviations tochondrial malate dehydrogenase) and intramuscular triglycer- CPTI, carnitine palmitoyltransferase I ides were quantified in 21-d-old (preweaning) IUGR and control IUGR, intrauterine growth retardation rat skeletal muscle. -
Catalase and Oxidase Test
CATALASE TEST Catalase is the enzyme that breaks hydrogen peroxide (H 2O2) into H 2O and O 2. Hydrogen peroxide is often used as a topical disinfectant in wounds, and the bubbling that is seen is due to the evolution of O 2 gas. H 2O2 is a potent oxidizing agent that can wreak havoc in a cell; because of this, any cell that uses O 2 or can live in the presence of O 2 must have a way to get rid of the peroxide. One of those ways is to make catalase. PROCEDURE a. Place a small amount of growth from your culture onto a clean microscope slide. If using colonies from a blood agar plate, be very careful not to scrape up any of the blood agar— blood cells are catalase positive and any contaminating agar could give a false positive. b. Add a few drops of H 2O2 onto the smear. If needed, mix with a toothpick. DO NOT use a metal loop or needle with H 2O2; it will give a false positive and degrade the metal. c. A positive result is the rapid evolution of O 2 as evidenced by bubbling. d. A negative result is no bubbles or only a few scattered bubbles. e. Dispose of your slide in the biohazard glass disposal container. Dispose of any toothpicks in the Pipet Keeper. OXIDASE TEST Basically, this is a test to see if an organism is an aerobe. It is a check for the presence of the electron transport chain that is the final phase of aerobic respiration. -
Methionine Sulfoxide Reductase a Is a Stereospecific Methionine Oxidase
Methionine sulfoxide reductase A is a stereospecific methionine oxidase Jung Chae Lim, Zheng You, Geumsoo Kim, and Rodney L. Levine1 Laboratory of Biochemistry, National Heart, Lung, and Blood Institute, Bethesda, MD 20892-8012 Edited by Irwin Fridovich, Duke University Medical Center, Durham, NC, and approved May 10, 2011 (received for review February 10, 2011) Methionine sulfoxide reductase A (MsrA) catalyzes the reduction Results of methionine sulfoxide to methionine and is specific for the S epi- Stoichiometry. Branlant and coworkers have studied in careful mer of methionine sulfoxide. The enzyme participates in defense detail the mechanism of the MsrA reaction in bacteria (17, 18). against oxidative stresses by reducing methionine sulfoxide resi- In the absence of reducing agents, each molecule of MsrA dues in proteins back to methionine. Because oxidation of methio- reduces two molecules of MetO. Reduction of the first MetO nine residues is reversible, this covalent modification could also generates a sulfenic acid at the active site cysteine, and it is function as a mechanism for cellular regulation, provided there reduced back to the thiol by a fast reaction, which generates a exists a stereospecific methionine oxidase. We show that MsrA disulfide bond in the resolving domain of the protein. The second itself is a stereospecific methionine oxidase, producing S-methio- MetO is then reduced and again generates a sulfenic acid at the nine sulfoxide as its product. MsrA catalyzes its own autooxidation active site. Because the resolving domain cysteines have already as well as oxidation of free methionine and methionine residues formed a disulfide, no further reaction forms. -
Nitrate Reductase from a Neurospora Mutant and a Component of Molybdenum-Enzymes (Nitrogenases/Sulfite Oxidase/E
Proc. Nat. Acad. Sci. USA Vol. 68, No. 12, pp. 3242-3246, December 1971 In Vitro Formation of Assimilatory Reduced Nicotinamide Adenine Dinucleotide Phosphate: Nitrate Reductase from a Neurospora Mutant and a Component of Molybdenum-Enzymes (nitrogenases/sulfite oxidase/E. coli) ALVIN NASON, KUO-YUNG LEE, SU-SHU PAN, PAUL A. KETCHUM*, ANTONIO LAMBERTI, AND JAMES DEVRIES McCollum-Pratt Institute, The Johns Hopkins University, Baltimore, Maryland 21218. Communicated by Earl R. Stadttman, September 16, 19711 ABSTRACT An active Neurospora-like assimilatory denum moiety. The second component could also be NADPH-nitrate reductase (EC 1.6.6.2), which can be formed in vitro by incubation of extracts of nitrate-in- supplied by the individual molybdenum-enzymes bovine duced Neurospora crassa mutant nit-i with extracts of milk and intestinal xanthine oxidases, chicken liver dehydro- (a) certain other nonallelic nitrate reductase mutants, (b) genase, and rabbit liver aldehyde oxidase (8), provided they uninduced wild type, or (c) xanthine oxidizing and liver were subjected to prior acidification, a treatment known to aldehyde-oxidase systems was also formed by combination dissociate some proteins into their subunits (9-11). (How- of the nit-i extract with other acid-treated enzymes known to contain molybdenum. These molybdenum ever, sodium molybdate and some 20 different partially puri- enzymes included (a) nitrogenase, or its molybdenum- fied enzymes that do not contain molybdenum were inactive.) iron protein, from Clostridium, Azotobacter, and -
The Role of Protein Crystallography in Defining the Mechanisms of Biogenesis and Catalysis in Copper Amine Oxidase
Int. J. Mol. Sci. 2012, 13, 5375-5405; doi:10.3390/ijms13055375 OPEN ACCESS International Journal of Molecular Sciences ISSN 1422-0067 www.mdpi.com/journal/ijms Review The Role of Protein Crystallography in Defining the Mechanisms of Biogenesis and Catalysis in Copper Amine Oxidase Valerie J. Klema and Carrie M. Wilmot * Department of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, 321 Church St. SE, Minneapolis, MN 55455, USA; E-Mail: [email protected] * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +1-612-624-2406; Fax: +1-612-624-5121. Received: 6 April 2012; in revised form: 22 April 2012 / Accepted: 26 April 2012 / Published: 3 May 2012 Abstract: Copper amine oxidases (CAOs) are a ubiquitous group of enzymes that catalyze the conversion of primary amines to aldehydes coupled to the reduction of O2 to H2O2. These enzymes utilize a wide range of substrates from methylamine to polypeptides. Changes in CAO activity are correlated with a variety of human diseases, including diabetes mellitus, Alzheimer’s disease, and inflammatory disorders. CAOs contain a cofactor, 2,4,5-trihydroxyphenylalanine quinone (TPQ), that is required for catalytic activity and synthesized through the post-translational modification of a tyrosine residue within the CAO polypeptide. TPQ generation is a self-processing event only requiring the addition of oxygen and Cu(II) to the apoCAO. Thus, the CAO active site supports two very different reactions: TPQ synthesis, and the two electron oxidation of primary amines. Crystal structures are available from bacterial through to human sources, and have given insight into substrate preference, stereospecificity, and structural changes during biogenesis and catalysis. -
35 Disorders of Purine and Pyrimidine Metabolism
35 Disorders of Purine and Pyrimidine Metabolism Georges van den Berghe, M.- Françoise Vincent, Sandrine Marie 35.1 Inborn Errors of Purine Metabolism – 435 35.1.1 Phosphoribosyl Pyrophosphate Synthetase Superactivity – 435 35.1.2 Adenylosuccinase Deficiency – 436 35.1.3 AICA-Ribosiduria – 437 35.1.4 Muscle AMP Deaminase Deficiency – 437 35.1.5 Adenosine Deaminase Deficiency – 438 35.1.6 Adenosine Deaminase Superactivity – 439 35.1.7 Purine Nucleoside Phosphorylase Deficiency – 440 35.1.8 Xanthine Oxidase Deficiency – 440 35.1.9 Hypoxanthine-Guanine Phosphoribosyltransferase Deficiency – 441 35.1.10 Adenine Phosphoribosyltransferase Deficiency – 442 35.1.11 Deoxyguanosine Kinase Deficiency – 442 35.2 Inborn Errors of Pyrimidine Metabolism – 445 35.2.1 UMP Synthase Deficiency (Hereditary Orotic Aciduria) – 445 35.2.2 Dihydropyrimidine Dehydrogenase Deficiency – 445 35.2.3 Dihydropyrimidinase Deficiency – 446 35.2.4 Ureidopropionase Deficiency – 446 35.2.5 Pyrimidine 5’-Nucleotidase Deficiency – 446 35.2.6 Cytosolic 5’-Nucleotidase Superactivity – 447 35.2.7 Thymidine Phosphorylase Deficiency – 447 35.2.8 Thymidine Kinase Deficiency – 447 References – 447 434 Chapter 35 · Disorders of Purine and Pyrimidine Metabolism Purine Metabolism Purine nucleotides are essential cellular constituents 4 The catabolic pathway starts from GMP, IMP and which intervene in energy transfer, metabolic regula- AMP, and produces uric acid, a poorly soluble tion, and synthesis of DNA and RNA. Purine metabo- compound, which tends to crystallize once its lism can be divided into three pathways: plasma concentration surpasses 6.5–7 mg/dl (0.38– 4 The biosynthetic pathway, often termed de novo, 0.47 mmol/l). starts with the formation of phosphoribosyl pyro- 4 The salvage pathway utilizes the purine bases, gua- phosphate (PRPP) and leads to the synthesis of nine, hypoxanthine and adenine, which are pro- inosine monophosphate (IMP). -
Temporal Voxel Cone Tracing with Interleaved Sample Patterns by Sanghyeok Hong
c 2015, SangHyeok Hong. All Rights Reserved. The material presented within this document does not necessarily reflect the opinion of the Committee, the Graduate Study Program, or DigiPen Institute of Technology. TEMPORAL VOXEL CONE TRACING WITH INTERLEAVED SAMPLE PATTERNS BY SangHyeok Hong THESIS Submitted in partial fulfillment of the requirements for the degree of Master of Science in Computer Science awarded by DigiPen Institute of Technology Redmond, Washington United States of America March 2015 Thesis Advisor: Gary Herron DIGIPEN INSTITUTE OF TECHNOLOGY GRADUATE STUDIES PROGRAM DEFENSE OF THESIS THE UNDERSIGNED VERIFY THAT THE FINAL ORAL DEFENSE OF THE MASTER OF SCIENCE THESIS TITLED Temporal Voxel Cone Tracing with Interleaved Sample Patterns BY SangHyeok Hong HAS BEEN SUCCESSFULLY COMPLETED ON March 12th, 2015. MAJOR FIELD OF STUDY: COMPUTER SCIENCE. APPROVED: Dmitri Volper date Xin Li date Graduate Program Director Dean of Faculty Dmitri Volper date Claude Comair date Department Chair, Computer Science President DIGIPEN INSTITUTE OF TECHNOLOGY GRADUATE STUDIES PROGRAM THESIS APPROVAL DATE: March 12th, 2015 BASED ON THE CANDIDATE'S SUCCESSFUL ORAL DEFENSE, IT IS RECOMMENDED THAT THE THESIS PREPARED BY SangHyeok Hong ENTITLED Temporal Voxel Cone Tracing with Interleaved Sample Patterns BE ACCEPTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE IN COMPUTER SCIENCE AT DIGIPEN INSTITUTE OF TECHNOLOGY. Gary Herron date Xin Li date Thesis Committee Chair Thesis Committee Member Pushpak Karnick date Matt -
Effect of Theophylline and Enprofylline on Bronchial Hyperresponsiveness
Thorax: first published as 10.1136/thx.44.12.1022 on 1 December 1989. Downloaded from Thorax 1989;44:1022-1026 Effect of theophylline and enprofylline on bronchial hyperresponsiveness G H KOETER, J KRAAN, M BOORSMA, J H G JONKMAN, TH W VAN DER MARK From the Department ofPulmonology and Lung Function, University Hospital, Groningen; Pharma Bio Research, Assen; and Astra Pharmaceutica, Rijswijk, The Netherlands ABSTRACT The effect of increasing intravenous doses of theophylline and enprofylline, a new xanthine derivative, on bronchial responsiveness to methacholine was studied in eight asthmatic patients. Methacholine provocations were carried out on three days before and after increasing doses of theophylline, enprofylline, and placebo, a double blind study design being used. Methacholine responsiveness was determined as the provocative concentration of methacholine causing a fall of 20% in FEV, (PC20). The patients were characterised pharmacokinetically before the main study to provide an individual dosage scheme for each patient that would provide rapid steady state plasma concentration plateaus of 5, 10, and 15 mg/l for theophylline and 1 25, 2 5, and 3-75 mg/l for enprofylline. Dose increments in the main study were given at 90 minute intervals. FEV, showed a small progressive decrease after placebo; it remained high in relation to placebo after both drugs and this effect was dose related. Methacholine PC20 values decreased after placebo; mean values were (maximum difference 2-0 and 1 7 higher after theophylline and enprofylline than after placebo copyright. doubling doses of methacholine); the effect of both drugs was dose related. Thus enprofylline and theophylline when given intravenously cause a small dose related increase in FEV1 and methacholine PC20 when compared with placebo. -
Isocitrate Dehydrogenase 1 (NADP+) (I5036)
Isocitrate Dehydrogenase 1 (NADP+), human recombinant, expressed in Escherichia coli Catalog Number I5036 Storage Temperature –20 °C CAS RN 9028-48-2 IDH1 and IDH2 have frequent genetic alterations in EC 1.1.1.42 acute myeloid leukemia4 and better understanding of Systematic name: Isocitrate:NADP+ oxidoreductase these mutations may lead to an improvement of (decarboxylating) individual cancer risk assessment.6 In addition other studies have shown loss of IDH1 in bladder cancer Synonyms: IDH1, cytosolic NADP(+)-dependent patients during tumor development suggesting this may isocitrate dehydrogenase, isocitrate:NADP+ be involved in tumor progression and metastasis.7 oxidoreductase (decarboxylating), Isocitric Dehydrogenase, ICD1, PICD, IDPC, ICDC, This product is lyophilized from a solution containing oxalosuccinate decarboxylase Tris-HCl, pH 8.0, with trehalose, ammonium sulfate, and DTT. Product Description Isocitrate dehydrogenase (NADP+) [EC 1.1.1.42] is a Purity: ³90% (SDS-PAGE) Krebs cycle enzyme, which converts isocitrate to a-ketoglutarate. The flow of isocitrate through the Specific activity: ³80 units/mg protein glyoxylate bypass is regulated by phosphorylation of isocitrate dehydrogenase, which competes for a Unit definition: 1 unit corresponds to the amount of 1 common substrate (isocitrate) with isocitrate lyase. enzyme, which converts 1 mmole of DL-isocitrate to The activity of the enzyme is dependent on the a-ketoglutarate per minute at pH 7.4 and 37 °C (NADP formation of a magnesium or manganese-isocitrate as cofactor). The activity is measured by observing the 2 complex. reduction of NADP to NADPH at 340 nm in the 7 presence of 4 mM DL-isocitrate and 2 mM MnSO4. -
Philosophy Sunday, July 8, 2018 12:01 PM
Philosophy Sunday, July 8, 2018 12:01 PM Western Pre-Socratics Fanon Heraclitus- Greek 535-475 Bayle Panta rhei Marshall Mcluhan • "Everything flows" Roman Jakobson • "No man ever steps in the same river twice" Saussure • Doctrine of flux Butler Logos Harris • "Reason" or "Argument" • "All entities come to be in accordance with the Logos" Dike eris • "Strife is justice" • Oppositional process of dissolving and generating known as strife "The Obscure" and "The Weeping Philosopher" "The path up and down are one and the same" • Theory about unity of opposites • Bow and lyre Native of Ephesus "Follow the common" "Character is fate" "Lighting steers the universe" Neitzshce said he was "eternally right" for "declaring that Being was an empty illusion" and embracing "becoming" Subject of Heideggar and Eugen Fink's lecture Fire was the origin of everything Influenced the Stoics Protagoras- Greek 490-420 BCE Most influential of the Sophists • Derided by Plato and Socrates for being mere rhetoricians "Man is the measure of all things" • Found many things to be unknowable • What is true for one person is not for another Could "make the worse case better" • Focused on persuasiveness of an argument Names a Socratic dialogue about whether virtue can be taught Pythagoras of Samos- Greek 570-495 BCE Metempsychosis • "Transmigration of souls" • Every soul is immortal and upon death enters a new body Pythagorean Theorem Pythagorean Tuning • System of musical tuning where frequency rations are on intervals based on ration 3:2 • "Pure" perfect fifth • Inspired