2020 North American Botanic Garden Strategy for Alpine Plant Conservation
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Next-Generation Sequencing Identification and Characterization
Next-generation sequencing identification and characterization of microsatellite markers in Aconitum austrokoreense Koidz., an endemic and endangered medicinal plant of Korea Y.-E. Yun, J.-N. Yu, G.H. Nam, S.-A. Ryu, S. Kim, K. Oh and C.E. Lim National Institute of Biological Resources, Environmental Research Complex, Incheon, Korea Corresponding author: C.E. Lim E-mail: [email protected] Genet. Mol. Res. 14 (2): 4812-4817 (2015) Received June 11, 2014 Accepted October 29, 2014 Published May 11, 2015 DOI http://dx.doi.org/10.4238/2015.May.11.13 ABSTRACT. We used next-generation sequencing to develop 9 novel microsatellite markers in Aconitum austrokoreense, an endemic and endangered medicinal plant in Korea. Owing to its very limited distribution, over-harvesting for traditional medicinal purposes, and habitat loss, the natural populations are dramatically declining in Korea. All novel microsatellite markers were successfully genotyped using 64 samples from two populations (Mt. Choejeong, Gyeongsangbuk- do and Ungseokbong, Gyeongsangnam-do) of Gyeongsang Province. The number of alleles ranged from 2 to 7 per locus in each population. Observed and expected heterozygosities ranged from 0.031 to 0.938 and from 0.031 to 0.697, respectively. The novel markers will be valuable tools for assessing the genetic diversity of A. austrokoreense and for germplasm conservation of this endangered species. Key words: Aconitum austrokoreense; Microsatellite marker; Endemic and endangered medicinal plant, Next-generation sequencing; Genetic diversity Genetics and Molecular Research 14 (2): 4812-4817 (2015) ©FUNPEC-RP www.funpecrp.com.br Novel microsatellite markers in A. austrokoreense 4813 INTRODUCTION Aconitum austrokoreense Koidz. -
Southwestern Showy Sedge in the Black Hills National Forest, South Dakota and Wyoming
United States Department of Agriculture Conservation Assessment Forest Service Rocky of the Southwestern Mountain Region Black Hills Showy Sedge in the Black National Forest Custer, Hills National Forest, South South Dakota May 2003 Dakota and Wyoming Bruce T. Glisson Conservation Assessment of Southwestern Showy Sedge in the Black Hills National Forest, South Dakota and Wyoming Bruce T. Glisson, Ph.D. 315 Matterhorn Drive Park City, UT 84098 email: [email protected] Bruce Glisson is a botanist and ecologist with over 10 years of consulting experience, located in Park City, Utah. He has earned a B.S. in Biology from Towson State University, an M.S. in Public Health from the University of Utah, and a Ph.D. in Botany from Brigham Young University EXECUTIVE SUMMARY Southwestern showy sedge, Carex bella Bailey, is a cespitose graminoid that occurs in the central and southern Rocky Mountain region of the western United States and Mexico, with a disjunct population in the Black Hills that may be a relict from the last Pleistocene glaciation (Cronquist et al., 1994; USDA NRCS, 2001; NatureServe, 2001). Southwestern showy sedge is quite restricted in range and habitat in the Black Hills. There is much that we don’t know about the species, as there has been no thorough surveys, no monitoring, and very few and limited studies on the species in the area. Long term persistence of southwestern showy sedge is enhanced due to the presence of at least several populations within the Black Elk Wilderness and Custer State Park. Populations in Custer State Park may be at greater risk due to recreational use and lack of protective regulations (Marriott 2001c). -
Gymnaconitum, a New Genus of Ranunculaceae Endemic to the Qinghai-Tibetan Plateau
TAXON 62 (4) • August 2013: 713–722 Wang & al. • Gymnaconitum, a new genus of Ranunculaceae Gymnaconitum, a new genus of Ranunculaceae endemic to the Qinghai-Tibetan Plateau Wei Wang,1 Yang Liu,2 Sheng-Xiang Yu,1 Tian-Gang Gao1 & Zhi-Duan Chen1 1 State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, P.R. China 2 Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, Connecticut 06269-3043, U.S.A. Author for correspondence: Wei Wang, [email protected] Abstract The monophyly of traditional Aconitum remains unresolved, owing to the controversial systematic position and taxonomic treatment of the monotypic, Qinghai-Tibetan Plateau endemic A. subg. Gymnaconitum. In this study, we analyzed two datasets using maximum likelihood and Bayesian inference methods: (1) two markers (ITS, trnL-F) of 285 Delphinieae species, and (2) six markers (ITS, trnL-F, trnH-psbA, trnK-matK, trnS-trnG, rbcL) of 32 Delphinieae species. All our analyses show that traditional Aconitum is not monophyletic and that subgenus Gymnaconitum and a broadly defined Delphinium form a clade. The SOWH tests also reject the inclusion of subgenus Gymnaconitum in traditional Aconitum. Subgenus Gymnaconitum markedly differs from other species of Aconitum and other genera of tribe Delphinieae in many non-molecular characters. By integrating lines of evidence from molecular phylogeny, divergence times, morphology, and karyology, we raise the mono- typic A. subg. Gymnaconitum to generic status. Keywords Aconitum; Delphinieae; Gymnaconitum; monophyly; phylogeny; Qinghai-Tibetan Plateau; Ranunculaceae; SOWH test Supplementary Material The Electronic Supplement (Figs. S1–S8; Appendices S1, S2) and the alignment files are available in the Supplementary Data section of the online version of this article (http://www.ingentaconnect.com/content/iapt/tax). -
Synopsis of a New Taxonomic Synthesis Of
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 8 October 2018 doi:10.20944/preprints201808.0496.v2 Hershkovitz Montiaceae Synopsis of a new taxonomic synthesis of Montiaceae (Portulacineae) based on rational metadata analysis, with critical new insights on historically poorly understood taxa and a review of ecological evolution and phylogeography Mark Alan HERSHKOVITZ1 1Santiago, Chile [email protected] Abstract: Montiaceae (Portulacineae) comprise a clade of at least 280 species and ca. 30 subspecific taxa primarily of western America and Australia. This work uses existing phylogenetic metadata to elaborate a new cladistic taxonomic synthesis, and clarifies morphological circumscriptions of several poorly known species. A total of 20 taxa are validated, seven new and 13 necessary nomenclatural recombinations. Hypotheses of Montiaceae historical biogeography and phenotypic evolution are evaluated in light of recent metadata. Key words: Montiaceae, taxonomy, phylogeny, ecology, phylogeography, evolution. 1. Introduction This work presents a new cladistic taxonomy of Montiaceae (Portulacineae) and several of its included taxa, along with notes on the diagnostics of certainly poorly known species and a summary of new interpretations of phylogeography and phenotypic and ecological evolution. The present work includes 20 nomenclatural novelties. However, the whole of the novelty is greater than the sum of these parts. The generic circumscriptions and diversity estimates are modified from Hernández-Ledesma et al. (2015).The suprageneric taxonomy is the first proposed since McNeill (1974) and the only phylogenetic one. Critical reevaluation of certain common and usually misidentified Chilean taxa is the first since Reiche (1898). Existing metadata are interpreted as evidence for a hybrid origin of a genus. -
List of Plants for Great Sand Dunes National Park and Preserve
Great Sand Dunes National Park and Preserve Plant Checklist DRAFT as of 29 November 2005 FERNS AND FERN ALLIES Equisetaceae (Horsetail Family) Vascular Plant Equisetales Equisetaceae Equisetum arvense Present in Park Rare Native Field horsetail Vascular Plant Equisetales Equisetaceae Equisetum laevigatum Present in Park Unknown Native Scouring-rush Polypodiaceae (Fern Family) Vascular Plant Polypodiales Dryopteridaceae Cystopteris fragilis Present in Park Uncommon Native Brittle bladderfern Vascular Plant Polypodiales Dryopteridaceae Woodsia oregana Present in Park Uncommon Native Oregon woodsia Pteridaceae (Maidenhair Fern Family) Vascular Plant Polypodiales Pteridaceae Argyrochosma fendleri Present in Park Unknown Native Zigzag fern Vascular Plant Polypodiales Pteridaceae Cheilanthes feei Present in Park Uncommon Native Slender lip fern Vascular Plant Polypodiales Pteridaceae Cryptogramma acrostichoides Present in Park Unknown Native American rockbrake Selaginellaceae (Spikemoss Family) Vascular Plant Selaginellales Selaginellaceae Selaginella densa Present in Park Rare Native Lesser spikemoss Vascular Plant Selaginellales Selaginellaceae Selaginella weatherbiana Present in Park Unknown Native Weatherby's clubmoss CONIFERS Cupressaceae (Cypress family) Vascular Plant Pinales Cupressaceae Juniperus scopulorum Present in Park Unknown Native Rocky Mountain juniper Pinaceae (Pine Family) Vascular Plant Pinales Pinaceae Abies concolor var. concolor Present in Park Rare Native White fir Vascular Plant Pinales Pinaceae Abies lasiocarpa Present -
Plant Communities of the Steens Mountain Subalpine Grassland and Their Relationship to Certain En
AN ABSTRACT OF THE THESIS OF John William Mairs for the degree of Doctor of Philosophy in Geography presented on April 29, 1977 Title: PLANT COMMUNITIES OF THE STEENS MOUNTAIN SUBALPINE GRASSLAND AND THEIR RELATIONSHIP TO CERTAIN EN- VIRONMENTAL ELEMENTS Abstract approved: Redacted for Privacy Robert E. Frenkel Plant communities in a 3.5 km2area along the summit ridge of Steens Mountain, Harney County in southeastern Oregon are identified. The character of winter snow deposi- tion and spring melt in this subalpine zone is a major fac- tor in producing the vegetation pattern.Past domestic grazing, topography, wind pattern, climate, soil depth and soil moisture availability are related to the present vege- tation mosaic. Computer-assisted vegetation ordination of 278 tran- sect-located sample units using SIMORD and tabular plant association analysis of 346 areally-located releves using PHYTO were applied complementarily. Aided by the interpre- tation of true-color aerial photography (1:5000), this analysis revealed and mapped 12 plant communities and one additional combination community named after dominant species. After comparison of four selected similarity indexes commonly used in vegetation ordination analysis, Sorensen's modified similarity index was chosen as best for interpretation of stand groupings in the study data. The general vernal snow cover recession pattern was verified with LANDSAT-1 digital data representations. Plant communities associated with snow deflation, or crest, areas are Erigeron compositus-Astragalus whitneyi, -
Wildflower Guide
Pussypaws (or Pussy Toes) Sierra Morning Glory Western Peony Calyptridium umbellatum Calystegia malacophylla Paeonia brownii Portulacaceae (Purslane) family Convolvulaceae (Morning Glory) family Paeoniaceae (Peony) family May-August July–August May-June The flower head clusters are reminiscent There are over 1,000 species of morning This flower’s petals are maroon to of fuzzy kitten paws. The stems and glory worldwide. Many bloom in the early brownish and the flower usually nods, flower heads are often almost prostrate morning hours, giving the family or points downward, so it can be easy (lying on the ground). Pussypaws are its name. Tahoe Donner is near the upper to miss. widespread and somewhat variable. elevation of the range for Sierra morning glory. Rabbitbrush Snow Plant Willow WILDFLOWER Ericameria sp. Sarcodes sanguinea Salix spp. Asteraceae (Sunflower or Aster) family Ericaceae (Heath) family Salicaceae (Willow) family GUIDE August–October May–June March–June This shrub is common throughout the Appears almost as soon as snow melts. There are several types of willow in Tahoe Donner area. The tips of the Saprophytic plant: obtains nutrients from the Tahoe Donner area, with blooming branches look yellow throughout the decaying organic matter in the soil (no seasons that extend from March at least blooming season. photosynthesis). through June. The picture shows typical early-spring catkins (buds) that are getting ready to bloom, and gives the smaller types of willow the familiar name pussy willow. Ranger’s Buttons Varileaf Phacelia Woolly Mule Ears Sphenosciadium capitellatum Phacelia heterophylla Wyethia mollis Apiaceae (Carrot) family Hydrophyllaceae (Waterleaf) family Asteraceae (Sunflower or Aster) family July–August April–July June–July Often found in wet or swampy places. -
Flora-Lab-Manual.Pdf
LabLab MManualanual ttoo tthehe Jane Mygatt Juliana Medeiros Flora of New Mexico Lab Manual to the Flora of New Mexico Jane Mygatt Juliana Medeiros University of New Mexico Herbarium Museum of Southwestern Biology MSC03 2020 1 University of New Mexico Albuquerque, NM, USA 87131-0001 October 2009 Contents page Introduction VI Acknowledgments VI Seed Plant Phylogeny 1 Timeline for the Evolution of Seed Plants 2 Non-fl owering Seed Plants 3 Order Gnetales Ephedraceae 4 Order (ungrouped) The Conifers Cupressaceae 5 Pinaceae 8 Field Trips 13 Sandia Crest 14 Las Huertas Canyon 20 Sevilleta 24 West Mesa 30 Rio Grande Bosque 34 Flowering Seed Plants- The Monocots 40 Order Alistmatales Lemnaceae 41 Order Asparagales Iridaceae 42 Orchidaceae 43 Order Commelinales Commelinaceae 45 Order Liliales Liliaceae 46 Order Poales Cyperaceae 47 Juncaceae 49 Poaceae 50 Typhaceae 53 Flowering Seed Plants- The Eudicots 54 Order (ungrouped) Nymphaeaceae 55 Order Proteales Platanaceae 56 Order Ranunculales Berberidaceae 57 Papaveraceae 58 Ranunculaceae 59 III page Core Eudicots 61 Saxifragales Crassulaceae 62 Saxifragaceae 63 Rosids Order Zygophyllales Zygophyllaceae 64 Rosid I Order Cucurbitales Cucurbitaceae 65 Order Fabales Fabaceae 66 Order Fagales Betulaceae 69 Fagaceae 70 Juglandaceae 71 Order Malpighiales Euphorbiaceae 72 Linaceae 73 Salicaceae 74 Violaceae 75 Order Rosales Elaeagnaceae 76 Rosaceae 77 Ulmaceae 81 Rosid II Order Brassicales Brassicaceae 82 Capparaceae 84 Order Geraniales Geraniaceae 85 Order Malvales Malvaceae 86 Order Myrtales Onagraceae -
Northern Monkshood), a Federally Threatened Species Margaret A
Journal of the Iowa Academy of Science: JIAS Volume 103 | Number 3-4 Article 3 1996 The aN tural History of Aconitum noveboracense Gray (Northern Monkshood), a Federally Threatened Species Margaret A. Kuchenreuther University of Wisconsin Copyright © Copyright 1996 by the Iowa Academy of Science, Inc. Follow this and additional works at: https://scholarworks.uni.edu/jias Part of the Anthropology Commons, Life Sciences Commons, Physical Sciences and Mathematics Commons, and the Science and Mathematics Education Commons Recommended Citation Kuchenreuther, Margaret A. (1996) "The aN tural History of Aconitum noveboracense Gray (Northern Monkshood), a Federally Threatened Species," Journal of the Iowa Academy of Science: JIAS: Vol. 103: No. 3-4 , Article 3. Available at: https://scholarworks.uni.edu/jias/vol103/iss3/3 This Research is brought to you for free and open access by UNI ScholarWorks. It has been accepted for inclusion in Journal of the Iowa Academy of Science: JIAS by an authorized editor of UNI ScholarWorks. For more information, please contact [email protected]. Jour. Iowa Acad. Sci. 103(3-4):57-62, 1996 The Natural History of Aconitum noveboracense Gray (Northern Monkshood), a Federally Threatened Species MARGARET A. KUCHENREUTHER1 Department of Botany, University of Wisconsin - Madison, Madison, WI 53706 Aconitum nrweboracense Gray (Ranunculaceae), commonly known as northern monkshood, is a federally threatened herbaceous perenni al that occurs in disjunct populations in Iowa, Wisconsin, Ohio and New York. It appears to be a glacial relict, existing today only in unique areas with cool, moist microenvironments, such as algific talus slopes. Field studies reveal that A. nrweboracense has a complex life history. -
Basal Eudicots • Already Looked at Basal Angiosperms Except Monocots
Basal Eudicots • already looked at basal angiosperms except monocots Basal Eudicots • Eudicots are the majority of angiosperms and defined by 3 pored pollen - often called tricolpates . transition from basal angiosperm to advanced eudicot . Basal Eudicots Basal Eudicots • tricolpate pollen: only • tricolpate pollen: a morphological feature derived or advanced defining eudicots character state that has consistently evolved essentially once • selective advantage for pollen germination Basal Eudicots Basal Eudicots • basal eudicots are a grade at the • basal eudicots are a grade at the base of eudicots - paraphyletic base of eudicots - paraphyletic • morphologically are transitionary • morphologically are transitionary core eudicots core eudicots between basal angiosperms and the between basal angiosperms and the core eudicots core eudicots lotus lily • examine two orders only: sycamore Ranunculales - 7 families Proteales - 3 families trochodendron Dutchman’s breeches marsh marigold boxwood Basal Eudicots Basal Eudicots *Ranunculaceae (Ranunculales) - *Ranunculaceae (Ranunculales) - buttercup family buttercup family • largest family of the basal • 60 genera, 2500 species • perennial herbs, sometimes eudicots woody or herbaceous climbers or • distribution centered in low shrubs temperate and cold regions of the northern and southern hemispheres Ranunculaceae baneberry clematis anemone Basal Eudicots Basal Eudicots marsh marigold *Ranunculaceae (Ranunculales) - *Ranunculaceae (Ranunculales) - CA 3+ CO (0)5+ A ∞∞ G (1)3+ buttercup family buttercup -
Perspectives from Montiaceae (Portulacineae) Evolution. II
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 2 October 2018 doi:10.20944/preprints201809.0566.v1 Hershkovitz Montiaceae Ecological Evolution 1 Perspectives from Montiaceae (Portulacineae) evolution. II. Ecological evolution, phylogenetic comparative 2 analysis, and the Principle of Evolutionary Idiosyncraticity 3 4 5 Mark A. Hershkovitz1 6 1Santiago, Chile 7 [email protected] 8 9 10 ABSTRACT 11 12 The present paper reviews evidence for ecological evolution of Montiaceae. Montiaceae 13 (Portulacineae) comprise a family of ca. 275 species and ca. 25 subspecific taxa of flowering plants 14 distributed mainly in extreme western America, with additional endemism elsewhere, including other 15 continents and islands. They have diversified repeatedly across steep ecological gradients. Based on narrative 16 analysis, I argue that phylogenetic transitions from annual to perennial life history have been more frequent 17 than suggested by computational phylogenetic reconstructions. I suggest that a reported phylogenetic 18 correlation between the evolution of life history and temperature niche is coincidental and not causal. I 19 demonstrate how statistical phylogenetic comparative analysis (PhCA) missed evidence for marked moisture 20 niche diversification among Montiaceae. I discount PhCA evidence for the relation between Montiaceae 21 genome duplication and ecological diversification. Based on the present analysis of Montiaceae evolution, I 22 criticize the premise of the prevalent statistical approach to PhCA, which tests Darwinian -
Nyffeler Taxon 2010 V.Pdf
Nyffeler, R; Eggli, U (2010). Disintegrating Portulacaceae: a new familial classification of the suborder Portulacineae (Caryophyllales) based on molecular and morphological data. Taxon, 59(1):227-240. Postprint available at: http://www.zora.uzh.ch University of Zurich Posted at the Zurich Open Repository and Archive, University of Zurich. Zurich Open Repository and Archive http://www.zora.uzh.ch Originally published at: Taxon 2010, 59(1):227-240. Winterthurerstr. 190 CH-8057 Zurich http://www.zora.uzh.ch Year: 2010 Disintegrating Portulacaceae: a new familial classification of the suborder Portulacineae (Caryophyllales) based on molecular and morphological data Nyffeler, R; Eggli, U Nyffeler, R; Eggli, U (2010). Disintegrating Portulacaceae: a new familial classification of the suborder Portulacineae (Caryophyllales) based on molecular and morphological data. Taxon, 59(1):227-240. Postprint available at: http://www.zora.uzh.ch Posted at the Zurich Open Repository and Archive, University of Zurich. http://www.zora.uzh.ch Originally published at: Taxon 2010, 59(1):227-240. Disintegrating Portulacaceae: a new familial classification of the suborder Portulacineae (Caryophyllales) based on molecular and morphological data Abstract Traditional classifications of the suborder Portulacineae recognize six families: Basellaceae, Cactaceae, Didiereaceae, Halophytaceae, Hectorellaceae, and Portulacaceae. However, phylogenetic analyses based on molecular sequence data indicate that the traditional family Portulacaceae is paraphyletic and consists of three distinct lineages that also include Cactaceae, Didiereaceae, and Hectorellaceae. We use sequence data from the chloroplast genes matK and ndhF representing 64 species of Portulacineae and outgroups to reconstruct their phylogenetic relationships with Bayesian and maximum parsimony inference methods. Evidence from these molecular phylogenetic analyses as well as from comparative morphological investigations allow us to propose a revised familial classification of the suborder Portulacineae.