Northern Monkshood), a Federally Threatened Species Margaret A
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Filogeografía De Systrophia Helicycloides: El Reflejo De La Dinámica Del Bosque Lluvioso Tropical En Los Genes 16S Rrna Y COI De Moluscos Terrestres
UNIVERSIDAD NACIONAL MAYOR DE SAN MARCOS FACULTAD DE CIENCIAS BIOLÓGICAS UNIDAD DE POSTGRADO Filogeografía de Systrophia helicycloides: el reflejo de la dinámica del bosque lluvioso tropical en los genes 16S rRNA y COI de moluscos terrestres TESIS para optar el grado académico de Magíster en Biología Molecular AUTOR Pedro Eduardo Romero Condori ASESORA Rina L. Ramírez Mesias Lima – Perú 2010 "In the end, we will conserve only what we love; we will love only what we understand; and we will understand only what we are taught." (Baba Dioum, 1968) ii Para Katherine ¡buenas salenas! iii AGRADECIMIENTOS A Emma, por continuar apoyándome en esta aventura, día tras día, y a Pedro por acompañarme ahora desde un buen lugar, para toda la vida. A la Dra. Rina Ramírez, por enseñarme a buscar las preguntas, y encontrar las respuestas a este “misterio de los misterios”, tal como llamaba Charles Darwin al origen de las especies. Es una suerte tenerla como referente académico, y más aún como ejemplo de vida. Este trabajo pudo ser realizado gracias al apoyo de la Universidad Nacional Mayor de San Marcos a través del Vicerrectorado de Investigación y el Instituto de Ciencias Biológicas Antonio Raimondi que aprobaron los proyectos: “Evaluación de la biodiversidad de moluscos en la región del río Bajo Madre de Dios”, “Diversidad genética en la Amazonia: Polimorfismo del genoma mitocondrial de moluscos terrestres de la familia Systrophiidae” y “Biodiversidad de la Familia Systrophiidae (Mollusca, Gastropoda) en la cuenca del Río Los Amigos (Dpto. Madre de Dios). Al Concejo Nacional de Ciencia y Tecnología (CONCYTEC), por la beca para finalizar mis estudios de maestría, fue un honor ser elegido en este grupo de jóvenes profesionales peruanos ganadores de una beca de posgrado en 2008, esta tesis es un sincero esfuerzo para retribuir la confianza y el apoyo prestado. -
Threatened & Endangered Species
Threatened & Endangered Species Iowa Animal ID Guide September 2011 Amphibians Butterflies Fresh Water Mussels Mammals Birds Fish Land Snails Reptiles A special thanks to the Iowa Department of Natural Resources for providing content to this guide. Natural Resources Conservation Service Helping People Help the Land www.ia.nrcs.usda.gov USDA is an equal opportunity provider and employer. How to use the Threatened & Endangered Species Iowa Animal ID Guide: • Endangered species are fish, plant life, or wildlife in danger of extinction throughout all or a significant part of its range. • Threatened species likely become endangered within the foreseeable future throughout all or a significant part of its range. • Orange color-coded species are Iowa’s endangered animal species. They are listed in alphabetical order by common name. • Blue color-coded species are Iowa’s threatened animal species. They are also listed in alphabetical order by common name. • The scientific name for each species is listed below the common name. • Maps on each page highlight the species range in Iowa. Counties filled with a lighter color are only federally protected, while those with a darker color are both state and federally protected. Categories for each species: Amphibians Fish Mammals Birds Fresh Water Mussels Butterflies Land Snails Reptiles Endangered Animal Species Barn owl Tyto alba Habitat Nests and roosts in dark, secluded places. Often found in old barns and abandoned buildings. Barn owls hunt in grassland habitats along field edges, fence rows, and wetland edges where pray is most available. Appropriate practices • Establish grassland to attract prey (200 acres adjacent to potential barn nesting sites can produce good results). -
Next-Generation Sequencing Identification and Characterization
Next-generation sequencing identification and characterization of microsatellite markers in Aconitum austrokoreense Koidz., an endemic and endangered medicinal plant of Korea Y.-E. Yun, J.-N. Yu, G.H. Nam, S.-A. Ryu, S. Kim, K. Oh and C.E. Lim National Institute of Biological Resources, Environmental Research Complex, Incheon, Korea Corresponding author: C.E. Lim E-mail: [email protected] Genet. Mol. Res. 14 (2): 4812-4817 (2015) Received June 11, 2014 Accepted October 29, 2014 Published May 11, 2015 DOI http://dx.doi.org/10.4238/2015.May.11.13 ABSTRACT. We used next-generation sequencing to develop 9 novel microsatellite markers in Aconitum austrokoreense, an endemic and endangered medicinal plant in Korea. Owing to its very limited distribution, over-harvesting for traditional medicinal purposes, and habitat loss, the natural populations are dramatically declining in Korea. All novel microsatellite markers were successfully genotyped using 64 samples from two populations (Mt. Choejeong, Gyeongsangbuk- do and Ungseokbong, Gyeongsangnam-do) of Gyeongsang Province. The number of alleles ranged from 2 to 7 per locus in each population. Observed and expected heterozygosities ranged from 0.031 to 0.938 and from 0.031 to 0.697, respectively. The novel markers will be valuable tools for assessing the genetic diversity of A. austrokoreense and for germplasm conservation of this endangered species. Key words: Aconitum austrokoreense; Microsatellite marker; Endemic and endangered medicinal plant, Next-generation sequencing; Genetic diversity Genetics and Molecular Research 14 (2): 4812-4817 (2015) ©FUNPEC-RP www.funpecrp.com.br Novel microsatellite markers in A. austrokoreense 4813 INTRODUCTION Aconitum austrokoreense Koidz. -
Southwestern Showy Sedge in the Black Hills National Forest, South Dakota and Wyoming
United States Department of Agriculture Conservation Assessment Forest Service Rocky of the Southwestern Mountain Region Black Hills Showy Sedge in the Black National Forest Custer, Hills National Forest, South South Dakota May 2003 Dakota and Wyoming Bruce T. Glisson Conservation Assessment of Southwestern Showy Sedge in the Black Hills National Forest, South Dakota and Wyoming Bruce T. Glisson, Ph.D. 315 Matterhorn Drive Park City, UT 84098 email: [email protected] Bruce Glisson is a botanist and ecologist with over 10 years of consulting experience, located in Park City, Utah. He has earned a B.S. in Biology from Towson State University, an M.S. in Public Health from the University of Utah, and a Ph.D. in Botany from Brigham Young University EXECUTIVE SUMMARY Southwestern showy sedge, Carex bella Bailey, is a cespitose graminoid that occurs in the central and southern Rocky Mountain region of the western United States and Mexico, with a disjunct population in the Black Hills that may be a relict from the last Pleistocene glaciation (Cronquist et al., 1994; USDA NRCS, 2001; NatureServe, 2001). Southwestern showy sedge is quite restricted in range and habitat in the Black Hills. There is much that we don’t know about the species, as there has been no thorough surveys, no monitoring, and very few and limited studies on the species in the area. Long term persistence of southwestern showy sedge is enhanced due to the presence of at least several populations within the Black Elk Wilderness and Custer State Park. Populations in Custer State Park may be at greater risk due to recreational use and lack of protective regulations (Marriott 2001c). -
Driftless Area National Wildlife Refuge
DRIFTLESS AREA NATIONAL WILDLIFE REFUGE McGregor, Iowa ANNUAL NARRATIVE REPORT FY2006 DRIFTLESS AREA NATIONAL WILDLIFE REFUGE McGregor, Iowa Fiscal Year 2006 _________________________ Prepared by Date _________________________ ______________________________ Refuge Manager Date Complex Manager Date ______________________________ Regional Chief, NWRS Date INTRODUCTION 1. Location The Driftless Area National Wildlife Refuge was established in 1989 for the protection and recovery of the threatened Northern monkshood and endangered Iowa Pleistocene snail. These species occur on a rare habitat type termed algific talus slopes. These are slopes with outflows of cold underground air that provide a glacial relict habitat to which certain species have adapted (see diagram below). The Driftless Area National Wildlife Refuge consists of ten units scattered throughout Allamakee, Clayton, Dubuque, and Jackson Counties in northeast Iowa. Total Refuge acreage is 811 acres with individual units ranging from 6 to 208 acres. Acquisition targets not only the algific slope, but surrounding buffer habitat that includes sinkholes important to air flow to the slope. Acquisition is ongoing, but limited due to insufficient funds. 2. Topography Refuge units are primarily forested and generally consist of steep topography with narrow creek valleys, large rock outcroppings, and karst features. Riparian and grassland habitat also occur on the Refuge. 3. Points of Interest The algific talus slope habitat of the Refuge harbors many unusual and rare plant and land snail species, some of which are also on the state threatened and endangered species list. These areas tend to be scenic with cliffs and rock outcroppings, springs, and coldwater streams. 4. Physical Facilities The Refuge office is located at the McGregor District of the Upper Mississippi River National Wildlife and Fish Refuge, McGregor, Iowa. -
Gymnaconitum, a New Genus of Ranunculaceae Endemic to the Qinghai-Tibetan Plateau
TAXON 62 (4) • August 2013: 713–722 Wang & al. • Gymnaconitum, a new genus of Ranunculaceae Gymnaconitum, a new genus of Ranunculaceae endemic to the Qinghai-Tibetan Plateau Wei Wang,1 Yang Liu,2 Sheng-Xiang Yu,1 Tian-Gang Gao1 & Zhi-Duan Chen1 1 State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, P.R. China 2 Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, Connecticut 06269-3043, U.S.A. Author for correspondence: Wei Wang, [email protected] Abstract The monophyly of traditional Aconitum remains unresolved, owing to the controversial systematic position and taxonomic treatment of the monotypic, Qinghai-Tibetan Plateau endemic A. subg. Gymnaconitum. In this study, we analyzed two datasets using maximum likelihood and Bayesian inference methods: (1) two markers (ITS, trnL-F) of 285 Delphinieae species, and (2) six markers (ITS, trnL-F, trnH-psbA, trnK-matK, trnS-trnG, rbcL) of 32 Delphinieae species. All our analyses show that traditional Aconitum is not monophyletic and that subgenus Gymnaconitum and a broadly defined Delphinium form a clade. The SOWH tests also reject the inclusion of subgenus Gymnaconitum in traditional Aconitum. Subgenus Gymnaconitum markedly differs from other species of Aconitum and other genera of tribe Delphinieae in many non-molecular characters. By integrating lines of evidence from molecular phylogeny, divergence times, morphology, and karyology, we raise the mono- typic A. subg. Gymnaconitum to generic status. Keywords Aconitum; Delphinieae; Gymnaconitum; monophyly; phylogeny; Qinghai-Tibetan Plateau; Ranunculaceae; SOWH test Supplementary Material The Electronic Supplement (Figs. S1–S8; Appendices S1, S2) and the alignment files are available in the Supplementary Data section of the online version of this article (http://www.ingentaconnect.com/content/iapt/tax). -
Entre Los Stylommatophora (Mollusca: Gastropoda)
Rev. peru. biol. 16(1): 051- 056 (Agosto 2009) © Facultad de Ciencias Biológicas UNMSM Posición evolutiva de BOSTRYX y SCUTALUS dentroVersión de Online los Stylommatophora ISSN 1727-9933 Posición evolutiva de caracoles terrestres peruanos (Orthalicidae) entre los Stylommatophora (Mollusca: Gastropoda) Evolutionary position of Peruvian land snails (Orthalicidae) among Stylommatophora (Mollusca: Gastropoda) Jorge Ramirez1,2, Rina Ramírez1,2, Pedro Romero1,2, Ana Chumbe1,2, Pablo Ramírez3 1Laboratorio de Sistemática Mole- cular y Filogeografía, Facultad de Resumen Ciencias Biológicas, Universidad Nacional Mayor de San Marcos. Los géneros Bostryx y Scutalus (Orthalicidae: Bulimulinae) son endémicos de América del Sur y están principal- Email Jorge Ramirez: jolobio@ mente distribuidos en la vertiente occidental de los Andes del Perú. El objetivo del presente trabajo fue evaluar hotmail.com su posición evolutiva dentro de los gastrópodos Stylommatophora basada en el marcador mitocondrial 16S 2Departamento de Malacología y Carcinología, Museo de Historia rRNA. Fueron obtenidas cuatro secuencias las que, junto con 28 de otros Stylommatophora disponibles en el Natural, Universidad Nacional GenBank, fueron alineadas con ClustalX. La reconstrucción filogenética se realizó mediante los métodos de Mayor de San Marcos. Neighbor-Joining, Máxima Parsimonia, Máxima Verosimilitud e Inferencia Bayesiana. El alineamiento resultó en Av. Arenales 1256, Apartado 14- 371 sitios, con presencia de indels. Los dos géneros de la Familia Orthalicidae por primera vez incluidos en una 0434, Lima-14, Perú. Email Rina filogenia molecular (Bostryx y Scutalus), formaron un grupo monofilético con otro miembro de la superfamilia Ramírez: [email protected] Orthalicoidea (Placostylus), tal como lo obtenido con marcadores nucleares. Se discute también su relación 3Laboratorio de Microbiología Molecular, Facultad de Ciencias evolutiva con otros caracoles terrestres. -
List of Plants for Great Sand Dunes National Park and Preserve
Great Sand Dunes National Park and Preserve Plant Checklist DRAFT as of 29 November 2005 FERNS AND FERN ALLIES Equisetaceae (Horsetail Family) Vascular Plant Equisetales Equisetaceae Equisetum arvense Present in Park Rare Native Field horsetail Vascular Plant Equisetales Equisetaceae Equisetum laevigatum Present in Park Unknown Native Scouring-rush Polypodiaceae (Fern Family) Vascular Plant Polypodiales Dryopteridaceae Cystopteris fragilis Present in Park Uncommon Native Brittle bladderfern Vascular Plant Polypodiales Dryopteridaceae Woodsia oregana Present in Park Uncommon Native Oregon woodsia Pteridaceae (Maidenhair Fern Family) Vascular Plant Polypodiales Pteridaceae Argyrochosma fendleri Present in Park Unknown Native Zigzag fern Vascular Plant Polypodiales Pteridaceae Cheilanthes feei Present in Park Uncommon Native Slender lip fern Vascular Plant Polypodiales Pteridaceae Cryptogramma acrostichoides Present in Park Unknown Native American rockbrake Selaginellaceae (Spikemoss Family) Vascular Plant Selaginellales Selaginellaceae Selaginella densa Present in Park Rare Native Lesser spikemoss Vascular Plant Selaginellales Selaginellaceae Selaginella weatherbiana Present in Park Unknown Native Weatherby's clubmoss CONIFERS Cupressaceae (Cypress family) Vascular Plant Pinales Cupressaceae Juniperus scopulorum Present in Park Unknown Native Rocky Mountain juniper Pinaceae (Pine Family) Vascular Plant Pinales Pinaceae Abies concolor var. concolor Present in Park Rare Native White fir Vascular Plant Pinales Pinaceae Abies lasiocarpa Present -
Iowa Habitat Loss and Disappearing Wildlife Iowa Habitat Loss and Disappearing Wildlife
Iowa Habitat Loss and Disappearance IowaAssociationofNaturalists Iowa Environmental Issues Series Iowa Habitat Loss and Disappearing Wildlife Iowa Habitat Loss and Disappearing Wildlife Habitat and wildlife Iowa habitat owa was once a land dominated by prairie and scattered prairie I wetlands. Thick woodlands and forested wetlands bordered its rivers and streams and covered the rugged landscape of northeast Iowa. The numerous interior streams meandered their way to the great border rivers - the Mississippi and the Missouri. Since Euro-American settlement, however, the historic Iowa landscape has been drastically changed, replaced by farms, towns, and highways. The once dominant Iowa prairie has been reduced to Iowa’s most rare and endangered habitat. Habitat refers to the features of an area that allow a wildlife species to live there. Although some types of wildlife may have many specific habitat needs, all wildlife have four basic habitat requirements: • adequate supplies of the right types of food; • available structure and materials that provide shelter to serve as safe places to live and raise young; • accessible and adequate supplies of water; and • enough space to find these necessary resources and to exercise natural behavior. When a wildlife species can no longer find enough food, water, shelter, or space, its habitat has been lost. Wildlife habitat is lost when land is cleared, polluted, or otherwise altered. IowaAssociationofNaturalists 1 Iowa Habitat Loss and Disappearing Wildlife Habitat is often described in terms of biological communities or habitat types. In addition to prairies, other habitat types include woodlands, wetlands, and waterways such as rivers and streams. Like prairies, these habitat types also have been lost or altered. -
Wildflower Guide
Pussypaws (or Pussy Toes) Sierra Morning Glory Western Peony Calyptridium umbellatum Calystegia malacophylla Paeonia brownii Portulacaceae (Purslane) family Convolvulaceae (Morning Glory) family Paeoniaceae (Peony) family May-August July–August May-June The flower head clusters are reminiscent There are over 1,000 species of morning This flower’s petals are maroon to of fuzzy kitten paws. The stems and glory worldwide. Many bloom in the early brownish and the flower usually nods, flower heads are often almost prostrate morning hours, giving the family or points downward, so it can be easy (lying on the ground). Pussypaws are its name. Tahoe Donner is near the upper to miss. widespread and somewhat variable. elevation of the range for Sierra morning glory. Rabbitbrush Snow Plant Willow WILDFLOWER Ericameria sp. Sarcodes sanguinea Salix spp. Asteraceae (Sunflower or Aster) family Ericaceae (Heath) family Salicaceae (Willow) family GUIDE August–October May–June March–June This shrub is common throughout the Appears almost as soon as snow melts. There are several types of willow in Tahoe Donner area. The tips of the Saprophytic plant: obtains nutrients from the Tahoe Donner area, with blooming branches look yellow throughout the decaying organic matter in the soil (no seasons that extend from March at least blooming season. photosynthesis). through June. The picture shows typical early-spring catkins (buds) that are getting ready to bloom, and gives the smaller types of willow the familiar name pussy willow. Ranger’s Buttons Varileaf Phacelia Woolly Mule Ears Sphenosciadium capitellatum Phacelia heterophylla Wyethia mollis Apiaceae (Carrot) family Hydrophyllaceae (Waterleaf) family Asteraceae (Sunflower or Aster) family July–August April–July June–July Often found in wet or swampy places. -
Flora-Lab-Manual.Pdf
LabLab MManualanual ttoo tthehe Jane Mygatt Juliana Medeiros Flora of New Mexico Lab Manual to the Flora of New Mexico Jane Mygatt Juliana Medeiros University of New Mexico Herbarium Museum of Southwestern Biology MSC03 2020 1 University of New Mexico Albuquerque, NM, USA 87131-0001 October 2009 Contents page Introduction VI Acknowledgments VI Seed Plant Phylogeny 1 Timeline for the Evolution of Seed Plants 2 Non-fl owering Seed Plants 3 Order Gnetales Ephedraceae 4 Order (ungrouped) The Conifers Cupressaceae 5 Pinaceae 8 Field Trips 13 Sandia Crest 14 Las Huertas Canyon 20 Sevilleta 24 West Mesa 30 Rio Grande Bosque 34 Flowering Seed Plants- The Monocots 40 Order Alistmatales Lemnaceae 41 Order Asparagales Iridaceae 42 Orchidaceae 43 Order Commelinales Commelinaceae 45 Order Liliales Liliaceae 46 Order Poales Cyperaceae 47 Juncaceae 49 Poaceae 50 Typhaceae 53 Flowering Seed Plants- The Eudicots 54 Order (ungrouped) Nymphaeaceae 55 Order Proteales Platanaceae 56 Order Ranunculales Berberidaceae 57 Papaveraceae 58 Ranunculaceae 59 III page Core Eudicots 61 Saxifragales Crassulaceae 62 Saxifragaceae 63 Rosids Order Zygophyllales Zygophyllaceae 64 Rosid I Order Cucurbitales Cucurbitaceae 65 Order Fabales Fabaceae 66 Order Fagales Betulaceae 69 Fagaceae 70 Juglandaceae 71 Order Malpighiales Euphorbiaceae 72 Linaceae 73 Salicaceae 74 Violaceae 75 Order Rosales Elaeagnaceae 76 Rosaceae 77 Ulmaceae 81 Rosid II Order Brassicales Brassicaceae 82 Capparaceae 84 Order Geraniales Geraniaceae 85 Order Malvales Malvaceae 86 Order Myrtales Onagraceae -
Wildflowers and Ferns Along the Acton Arboretum Wildflower Trail and in Other Gardens FERNS (Including Those Occurring Naturally
Wildflowers and Ferns Along the Acton Arboretum Wildflower Trail and In Other Gardens Updated to June 9, 2018 by Bruce Carley FERNS (including those occurring naturally along the trail and both boardwalks) Royal fern (Osmunda regalis): occasional along south boardwalk, at edge of hosta garden, and elsewhere at Arboretum Cinnamon fern (Osmunda cinnamomea): naturally occurring in quantity along south boardwalk Interrupted fern (Osmunda claytoniana): naturally occurring in quantity along south boardwalk Maidenhair fern (Adiantum pedatum): several healthy clumps along boardwalk and trail, a few in other Arboretum gardens Common polypody (Polypodium virginianum): 1 small clump near north boardwalk Hayscented fern (Dennstaedtia punctilobula): aggressive species; naturally occurring along north boardwalk Bracken fern (Pteridium aquilinum): occasional along wildflower trail; common elsewhere at Arboretum Broad beech fern (Phegopteris hexagonoptera): up to a few near north boardwalk; also in rhododendron and hosta gardens New York fern (Thelypteris noveboracensis): naturally occurring and abundant along wildflower trail * Ostrich fern (Matteuccia pensylvanica): well-established along many parts of wildflower trail; fiddleheads edible Sensitive fern (Onoclea sensibilis): naturally occurring and abundant along south boardwalk Lady fern (Athyrium filix-foemina): moderately present along wildflower trail and south boardwalk Common woodfern (Dryopteris spinulosa): 1 patch of 4 plants along south boardwalk; occasional elsewhere at Arboretum Marginal