Developing a High-Throughput SNP-Based Marker System to Facilitate the Introgression of Traits from Aegilops Species Into Bread Wheat (Triticum Aestivum)
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Genome Sequence of the Progenitor of the Wheat D Genome Aegilops Tauschii Ming-Cheng Luo1*, Yong Q
OPEN LETTER doi:10.1038/nature24486 Genome sequence of the progenitor of the wheat D genome Aegilops tauschii Ming-Cheng Luo1*, Yong Q. Gu2*, Daniela Puiu3*, Hao Wang4,5,6*, Sven O. Twardziok7*, Karin R. Deal1, Naxin Huo1,2, Tingting Zhu1, Le Wang1, Yi Wang1,2, Patrick E. McGuire1, Shuyang Liu1, Hai Long1, Ramesh K. Ramasamy1, Juan C. Rodriguez1, Sonny L. Van1, Luxia Yuan1, Zhenzhong Wang1,8, Zhiqiang Xia1, Lichan Xiao1, Olin D. Anderson2, Shuhong Ouyang2,8, Yong Liang2,8, Aleksey V. Zimin3, Geo Pertea3, Peng Qi4,5, Jeffrey L. Bennetzen6, Xiongtao Dai9, Matthew W. Dawson9, Hans-Georg Müller9, Karl Kugler7, Lorena Rivarola-Duarte7, Manuel Spannagl7, Klaus F. X. Mayer7,10, Fu-Hao Lu11, Michael W. Bevan11, Philippe Leroy12, Pingchuan Li13, Frank M. You13, Qixin Sun8, Zhiyong Liu8, Eric Lyons14, Thomas Wicker15, Steven L. Salzberg3,16, Katrien M. Devos4,5 & Jan Dvořák1 Aegilops tauschii is the diploid progenitor of the D genome of We conclude therefore that the size of the Ae. tauschii genome is about hexaploid wheat1 (Triticum aestivum, genomes AABBDD) and 4.3 Gb. an important genetic resource for wheat2–4. The large size and To assess the accuracy of our assembly, sequences of 195 inde- highly repetitive nature of the Ae. tauschii genome has until now pendently sequenced and assembled AL8/78 BAC clones8, which precluded the development of a reference-quality genome sequence5. contained 25,540,177 bp in 2,405 unordered contigs, were aligned to Here we use an array of advanced technologies, including ordered- Aet v3.0. Five contigs failed to align and six extended partly into gaps, clone genome sequencing, whole-genome shotgun sequencing, accounting for 0.25% of the total length of the contigs. -
Establishment of a Global Network for the in Situ Conservation of Crop Wild Relatives: Status and Needs
THEMATIC BACKGROUND STUDY Establishment of a Global Network for the In Situ Conservation of Crop Wild Relatives: Status and Needs Nigel Maxted and Shelagh Kell BACKGROUND STUDY PAPER NO. 39 October 2009 COMMISSION ON GENETIC RESOURCES FOR FOOD AND AGRICULTURE ESTABLISHMENT OF A GLOBAL NETWORK FOR THE IN SITU CONSERVATION OF CROP WILD RELATIVES: STATUS AND NEEDS by *By Nigel Maxted and Shelagh Kell The content of this document is entirely the responsibility of the authors, and does not .necessarily represent the views of the FAO, or its Members 2 * School of Biosciences, University of Birmingham. Disclaimer The content of this document is entirely the responsibility of the authors, and does not necessarily represent the views of the Food and Agriculture Organization of the United Nations (FAO), or its Members. The designations employed and the presentation of material do not imply the expression of any opinion whatsoever on the part of FAO concerning legal or development status of any country, territory, city or area or of its authorities or concerning the delimitation of its frontiers or boundaries. The mention of specific companies or products of manufacturers, whether or not these have been patented, does not imply that these have been endorsed by FAO in preference to others of a similar nature that are not mentioned. CONTENTS SUMMARY 6 ACKNOWLEDGEMENTS 7 PART 1: INTRODUCTION 8 1.1 Background and scope 8 1.2 The global and local importance of crop wild relatives 10 1.3 Definition of a crop wild relative 12 1.4 Global numbers of crop -
Taxonomy, Morphology and Palynology of Aegilops Vavilovii (Zhuk.) Chennav
African Journal of Agricultural Research Vol. 5(20), pp. 2841-2849, 18 October, 2010 Available online at http://www.academicjournals.org/AJAR ISSN 1991-637X ©2010 Academic Journals Full Length Research Paper Taxonomy, morphology and palynology of Aegilops vavilovii (Zhuk.) Chennav. (Poaceae: Triticeae) Evren Cabi1* Musa Doan1 Hülya Özler2, Galip Akaydin3 and Alptekin Karagöz4 1Department of Biological Sciences, Faculty of Arts and Sciences, Middle East Technical University, Ankara, Turkey. 2Department of Biology, Faculty of Arts and Sciences, Sinop University, Sinop Turkey. 3Department of Biology Education, Hacettepe University, 06800 Ankara, Turkey. 4Department of Biology, Aksaray University, Aksaray, Turkey. Accepted 23 September, 2010 Aegilops vavilovii (Zhuk.) Chennav., a rare species, was collected from Southeast Anatolia, Turkey. During the field studies of the project “Taxonomic revision of Tribe Triticeae in Turkey”, Ae. vavilovii was accidentally recollected from three localities in anliurfa and Mardin provinces in 2007 and 2008, respectively. The main objective of this study is to shed light on the diagnostic characteristics of this rare species including its morphological, palynological and micro morphological features. Moreover, an emended and expanded description, distribution, phenology and ecology of this rare species are also provided. A. vavilovii and A. crassa are naturally found in the Southeastern part of Turkey and they share similar morphological features that caused a confused taxonomy. Pollen grains of A. vavilovii are heteropolar, monoporate and spheroidal (A/B: 1,13) typically as Poaceous. However, it generally, prefers clayish loam soils that are slightly alkaline (pH 7.7) with low organic content (1.54%). Although it is a rare species with very narrow area of distribution, very few samples have been represented in ex situ collections and the species has not been involved in any in situ conservation activities to save its genetic resources in Turkey. -
Evaluation of Agro-Morphological Diversity in Wild Relatives of Wheat Collected in Iran
J. Agr. Sci. Tech. (2017) Vol. 19: 943-956 Evaluation of Agro-Morphological Diversity in Wild Relatives of Wheat Collected in Iran A. Pour-Aboughadareh1*, J. Ahmadi1, A. A. Mehrabi2, M. Moghaddam3, and A. Etminan4 ABSTRACT In this study, a core collection of 180 Aegilops and Triticum accessions belonging to six diploid (T. boeoticum Bioss., T. urartu Gandilyan., Ae. speltoides Tausch., Ae. tauschii Coss., Ae. caudata L. and Ae. umbellulata Zhuk.), five tetraploid (T. durum, Ae. neglecta Req. ex Bertol., Ae. cylindrica Host. and Ae. crassa Boiss) and one hexaploid (T. aestivum L.) species collected from different regions of Iran were evaluated using 20 agro- morphological characters. Statistical analysis showed significant differences among accessions. The Shannon-Weaver (HʹSW) and Nei’s (HʹN) genetic diversity indices disclosed intermediate to high diversity for most characters in both Aegilops and Triticum core sets. In factor analysis, the first five components justified 82.17% of the total of agro- morphological variation. Based on measured characters, the 180 accessions were separated into two major groups by cluster analysis. Furthermore, based on the 2D-plot generated using two discriminant functions, different species were separated into six groups, so that distribution of species accorded with their genome construction. Overall, our results revealed considerable levels of genetic diversity among studied Iranian Aegilops and Triticum accessions, which can open up new avenues for rethinking the connections between wild relatives to explore valuable agronomic traits for the improvement and adaptation of wheat. Keywords: Aegilops, Multivariate analysis, Phenotypic diversity, Triticum. INTRODUCTION traits, such as disease- or pest-resistance and even yield improvement. -
Interspecific Hybridization Between Durum Wheat and Aegilops Umbellulata (Zhuk.)
713 Bulgarian Journal of Agricultural Science, 18 (No 5) 2012, 713-721 Agricultural Academy INTERSPECIFIC HYBRIDIZATION BETWEEN DURUM WHEAT AND AEGILOPS UMBELLULATA (ZHUK.) B. HADZHIIVANOVA, V. BOZHANOVA and D. DECHEV Field Crops Institute, BG - 6200 Chirpan, Bulgaria Abstract HADZHIIVANOVA, B., V. BOZHANOVA and D. DECHEV, 2012. Interspecific hybridization between durum wheat and Aegilops umbellulata (Zhuk.). Bulg. J. Agric. Sci., 18: 713-721 The possibility for obtaining of interspecific hybrids between three durum wheat genotypes (Triticum durum, 2n = 4x = 28, AABB genomes) and one accession of Aegilops umbellulata (2n = 2x = 18, UU genome) during two different seasons has been studied. A low crossability rate of 3% average for all genotypes over two years was achieved. The observed variation of crossability is due to a greatest extent to the genotype of durum wheat parent with 82.91% from total variation. Hybrid plants were obtained only by means of embryo rescue method. The ability for in vitro regeneration was still independent of crossability of used durum wheat genotypes. All received F1 hybrids plants were identical they exhibited good tillering ability and manifested traits from both parents. In spite of the observed partially fertility in F1 hybrids between durum wheat and Aegilops umbellulata no germination of the hybrid seeds was ascertained. BC1 seeds were obtained from F1 hybrids of hybrid combination Beloslava × Aegilops umbellulata after backcrossing to the durum wheat parent. An increase of crossability with advancing of backcross progenies – from 1.6% in BC1 hybrids to 26.2% in BC2 hybrids has been found. Meiotic abnormalities including dyads and triads at the end of microsporogenesis as well as uninucleate microspores with a different shape and size were observed suggesting production of unreduced gametes in this cross. -
Genes Encoding Plastid Acetyl-Coa Carboxylase and 3-Phosphoglycerate Kinase of the Triticum͞aegilops Complex and the Evolutionary History of Polyploid Wheat
Genes encoding plastid acetyl-CoA carboxylase and 3-phosphoglycerate kinase of the Triticum͞Aegilops complex and the evolutionary history of polyploid wheat Shaoxing Huang*†, Anchalee Sirikhachornkit*, Xiujuan Su*, Justin Faris‡§, Bikram Gill‡, Robert Haselkorn*, and Piotr Gornicki*¶ *Department of Molecular Genetics and Cell Biology, University of Chicago, Chicago, IL 60637; and ‡Department of Plant Pathology, Kansas State University, Manhattan, KS 66506 Contributed by Robert Haselkorn, April 12, 2002 The classic wheat evolutionary history is one of adaptive radiation of at the diploid level from a common diploid ancestor and conver- the diploid Triticum͞Aegilops species (A, S, D), genome convergence gence at the polyploid level involving the diverged diploid genomes and divergence of the tetraploid (Triticum turgidum AABB, and (2). Various Aegilops species contributed significantly to the genetic Triticum timopheevii AAGG) and hexaploid (Triticum aestivum, makeup of the polyploid wheats. Extensive classical analyses and AABBDD) species. We analyzed Acc-1 (plastid acetyl-CoA carboxylase) more recent molecular studies have provided information on the and Pgk-1 (plastid 3-phosphoglycerate kinase) genes to determine identity of donors and some of the patterns of genome evolution of phylogenetic relationships among Triticum and Aegilops species of the Triticum͞Aegilops species (3). A review of Triticum and Aegilops the wheat lineage and to establish the timeline of wheat evolution taxonomy and related literature is available from the Wheat based on gene sequence comparisons. Triticum urartu was confirmed Genetic Resource Center at ksu.edu͞wgrc. as the A genome donor of tetraploid and hexaploid wheat. The A The Triticum and Aegilops genera contain 13 diploid and 18 genome of polyploid wheat diverged from T. -
This Article Is from the March 2013 Issue Of
This article is from the March 2013 issue of published by The American Phytopathological Society For more information on this and other topics related to plant pathology, we invite you to visit APSnet at www.apsnet.org Identifying New Sources of Resistance to Eyespot of Wheat in Aegilops longissima H. Sheng and T. D. Murray, Department of Plant Pathology, Washington State University, Pullman 99164-6430 Abstract Sheng, H., and Murray, T. D. 2013. Identifying new sources of resistance to eyespot of wheat in Aegilops longissima. Plant Dis. 97:346-353. Eyespot, caused by Oculimacula yallundae and O. acuformis, is an substitution lines containing chromosomes 1Sl, 2Sl, 5Sl, and 7Sl, and a economically important disease of wheat. Currently, two eyespot re- 4Sl7Sl translocation were resistant to O. yallundae. Chromosomes 1Sl, sistance genes, Pch1 and Pch2, are used in wheat breeding programs 2Sl, 4Sl, and 5Sl contributed to resistance to O. acuformis more than but neither provides complete control or prevents yield loss. Aegilops others. Chromosomes 1Sl, 2Sl, 5Sl, and 7Sl provided resistance to both longissima is a distant relative of wheat and proven donor of genes pathogens. This is the first report of eyespot resistance in A. longis- useful for wheat improvement, including disease resistance. Forty A. sima. These results provide evidence that genetic control of eyespot longissima accessions and 83 A. longissima chromosome addition or resistance is present on multiple chromosomes of the Sl genome. This substitution lines were evaluated for resistance to eyespot. Among the research demonstrates that A. longissima is a potential new source of 40 accessions tested, 43% were resistant to O. -
DISSERTAÇÃO José Roseno De Mendonça Filho.Pdf
UNIVERSIDADE FEDERAL DE PERNAMBUCO CENTRO DE BIOCIÊNCIAS DEPARTAMENTO DE GENÉTICA PROGRAMA DE PÓS-GRADUAÇÃO EM CIÊNCIAS BIOLÓGICAS JOSÉ ROSENO DE MENDONÇA FILHO DIVERSIDADE CARIOTÍPICA EM REPRESENTANTES DO COMPLEXO CRYPTANTHOID (BROMELIOIDEAE, BROMELIACEAE) Recife 2019 JOSÉ ROSENO DE MENDONÇA FILHO DIVERSIDADE CARIOTÍPICA EM REPRESENTANTES DO COMPLEXO CRYPTANTHOID (BROMELIOIDEAE, BROMELIACEAE) Dissertação apresentada ao Programa de Pós- Graduação em Ciências Biológicas, Área de Concentração Genética, da Universidade Federal de Pernambuco, como requisito para obtenção do título de mestre em Ciências Biológicas. Orientadora: Profa. Dra. Ana Maria Benko Iseppon Coorientadores: Profa. Dra. Ana Christina Brasileiro-Vidal Prof. Dr Jaílson Gitai dos Santos Frazão Recife 2019 JOSÉ ROSENO DE MENDONÇA FILHO DIVERSIDADE CARIOTÍPICA EM REPRESENTANTES DO COMPLEXO CRYPTANTHOID (BROMELIOIDEAE, BROMELIACEAE) Dissertação apresentada ao Programa de Pós-Graduação em Ciências Biológicas, Área de Concentração Genética, da Universidade Federal de Pernambuco, como requisito para obtenção do título de mestre em Ciências Biológicas. Aprovada em: 23/07/2019 COMISSÃO EXAMINADORA ___________________________________________ Profa. Dra. Ana Maria Benko Iseppon UFPE (Orientadora) ___________________________________________ Profa. Dra. Maria Betânia de Oliveira Melo UFPE (Membro Interno) ____________________________________________ Prof. Dr. Geyner Alves dos Santos Cruz UPE – Campus de Petrolina (Membro Externo) MEMBROS SUPLENTES ____________________________________________ -
Aegilops</Emphasis>
DOI: 10.2478/s11535-006-0027-1 Research article CEJB 1(3) 2006 399–411 Distribution and characterization of Aegilops and Triticum species from the Bulgarian Black Sea coast Penko Spetsov1∗, Dragomir Plamenov2, Vanya Kiryakova1 1 Dobroudja Agricultural Institute, 9520 General Toshevo, Bulgaria 2 Pedagogical College – Dobrich 9300, Bs. Konstantin Preslavsky University, Shumen, Bulgaria Received 30 May 2006; accepted 24 July 2006 Abstract: A total of 158 Aegilops-Triticum samples representing six Aegilops species (one diploid, four tetraploid and one hexaploid) and one diploid Triticum were collected along the Bulgarian Black Sea coast, and their distribution on the 350 km long coastal line was reported. The region south of Kamchia river, accepted as the middle point of the coast, was characterized by the greatest diversity of these wild relatives of wheat. The most widely distributed species in this area was Ae. geniculata. Ae. cylindrica was distributed only in north (Durankulak), while Ae. biuncialis and Ae. triuncialis were collected both north and south of Kamchia river. All samples of Ae. neglecta were hexaploid. Natural hybrids of goatgrass and wheat were found in Ae. cylindrica populations. Triticum monococcum ssp. aegilopoides had limited distribution in the south region. Aegilops uniaristata was recorded as a new species for the Bulgarian flora. Most of the samples expressed resistance to powdery mildew in seedling and adult stage, but all of them were polymorphic regarding the resistance to leaf rust (cultures 73760 and 43763). The study revealed additional data for the distribution of Aegilops and Triticum species in Bulgaria and their potential value as genetic resources in wheat improvement. -
Evaluation and Utilization of Biodiversity in Triticeae for Wheat Lmprovement
Utah State University DigitalCommons@USU Intermountain Herbarium of Utah State Herbarium Publications University 6-24-1994 Evaluation and Utilization of Biodiversity in Triticeae for Wheat lmprovement A. B. Damania University of California, Davis J. Valkoun University of California, Davis Follow this and additional works at: https://digitalcommons.usu.edu/herbarium_pubs Part of the Agriculture Commons, Food Science Commons, and the Plant Sciences Commons Recommended Citation Damania, A. B. and Valkoun, J., "Evaluation and Utilization of Biodiversity in Triticeae for Wheat lmprovement" (1994). Herbarium Publications. Paper 4. https://digitalcommons.usu.edu/herbarium_pubs/4 This Conference Paper is brought to you for free and open access by the Intermountain Herbarium of Utah State University at DigitalCommons@USU. It has been accepted for inclusion in Herbarium Publications by an authorized administrator of DigitalCommons@USU. For more information, please contact [email protected]. Evaluation and Utilization of Biodiversity in Triticeae for Wheat lmpr.ovement A. B. DAMANIA1 and J. VALKOUN International Center for Agricultural Research in the Dry Areas (I CARDA), PO Box 5466, Aleppo, Syria. 1Present address: Genetic Resources Conservation Program, University of California, Davis, CA 95616-8602, USA ABSTRACT A population structure of a species is defined as the totality of ecological and genetical relationships among To adapt new varieties to a wide spectrum of individual members which may co-evolve as a result of environments breeders and farmers have emphasized the gene exchange but may also diverge under localized forces need for broadening the current narrow genetic base of of evolutionary change Qain, 1975). Landraces and obsolete modern varieties of important cereal crops such as wheat cultivars are as a rule products of several years of crop and barley. -
Phytosiderophore Release in Aegilops Tauschii and Triticum Species Under Zinc and Iron Deficiencies
Journal of Experimental Botany, Vol. 52, No. 358, pp. 1093±1099, May 2001 Phytosiderophore release in Aegilops tauschii and Triticum species under zinc and iron deficiencies I. Tolay1, B. Erenoglu1,2,V.RoÈ mheld2, H.J. Braun3 and I. Cakmak4,5 1 Cukurova University, Department of Soil Science and Plant Nutrition, 01330 Adana, Turkey 2 UniversitaÈ t Hohenheim, Institut fuÈ r PflanzenernaÈ hrung %330), 70593 Stuttgart, Germany 3 CIMMYT, POB 39, Emek 06511, Ankara, Turkey 4 Sabanci University, Faculty of Engineering and Natural Sciences, 81474 Tuzla, Istanbul, Turkey Received 2 August 2000; Accepted 27 November 2000 Abstract of PS release was around 14 mmol *30 plants)À1 *3 h)À1. Diploid wheats and Ae. tauschii accessions Using three diploid *Triticum monococcum, AA), behaved similarly in their capacity to release PS three tetraploid *Triticum turgidum, BBAA), two hexa- and intermediate between tetraploid and hexa- ploid *Triticum aestivum and Triticum compactum, ploid wheats regarding the PS release capacity. All BBAADD) wheats and two Aegilops tauschii *DD) Triticum and Aegilops species released more PS genotypes, experiments were carried out under under Fe than Zn deficiency, particularly when the controlled environmental conditions in nutrient solu- rate of PS release was expressed per unit dry weight tion *i) to study the relationships between the rates of roots. On average, the rates of PS release under Fe of phytosiderophore *PS) release from the roots and deficiency were 3.0, 5.7, 8.4, and 16 mmol *30 plants)À1 the tolerance of diploid, tetraploid, and hexaploid *3 h)À1 for Ae. tauschii, diploid, tetraploid and wheats and Ae. -
A Comparative Study of Chromosome Morphology Among Some Accessions of Aegilops Crassa
African Journal of Biotechnology Vol. 9(7), pp. 996-1000, 15 February, 2010 Available online at http://www.academicjournals.org/AJB DOI: 10.5897/AJB09.243 ISSN 1684–5315 © 2010 Academic Journals Full Length Research Paper A comparative study of chromosome morphology among some accessions of Aegilops crassa Hatami-Maleki Hamid 1, Samizadeh Habibollah 2, Asghari-Zakaria Rasool 3, Moshtaghi Nasrin 4 and Fazeli-Sangari Esmaeil 4 1Department of Agriculture and Plant Breeding, Faculty of Agriculture, Maragheh University, Maragheh, Iran. 2Department of Agriculture, Faculty of Agriculture, Guilan University, Rasht, Iran. 3Department of Agriculture and Plant Breeding, Faculty of Agriculture, Mohaghegh Ardebili University, Ardebil, Iran. 4Department of Biotechnology, Faculty of Agriculture, Ferdowsi University of Mashhad, Mashhad, Iran Accepted 10 April, 2009 In this study karyotype and chromosome characteristics of the nine accessions of Aegilops crassa species obtained from gene bank of Seed and Plant Improvement Research Institute (SPII) of Iran and one accession collected by authors were inspected. Aceto-iron-hematoxilin staining method was used to stain chromosomes. For each accession, chromosome characteristics including long and short arms, chromosome lengths, arm ratio index and relative chromosome lengths were measured using micro measure 3.3 software. Results revealed that all of the studied accessions were tetraploid (2n = 4x = 28) and consisted of 13 pairs of metacentric and one pair of submetacentric chromosomes, of which two pairs were satellite chromosomes. Karyotype formula for these accessions were 13 m + 1 sm. Arm ratio index value of chromosomes ranged from 1.11 in chromosome number 6 to 1.77 in chromosome number 12. The B chromosomes were not seen in any of the accessions.