Vanadium Haloperoxidases from Brown Algae of the Laminariaceae Family
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Myeloperoxidase Mediates Cell Adhesion Via the Αmβ2 Integrin (Mac-1, Cd11b/CD18)
Journal of Cell Science 110, 1133-1139 (1997) 1133 Printed in Great Britain © The Company of Biologists Limited 1997 JCS4390 Myeloperoxidase mediates cell adhesion via the αMβ2 integrin (Mac-1, CD11b/CD18) Mats W. Johansson1,*, Manuel Patarroyo2, Fredrik Öberg3, Agneta Siegbahn4 and Kenneth Nilsson3 1Department of Physiological Botany, University of Uppsala, Villavägen 6, S-75236 Uppsala, Sweden 2Microbiology and Tumour Biology Centre, Karolinska Institute, PO Box 280, S-17177 Stockholm, Sweden 3Department of Pathology, University of Uppsala, University Hospital, S-75185 Uppsala, Sweden 4Department of Clinical Chemistry, University of Uppsala, University Hospital, S-75185 Uppsala, Sweden *Author for correspondence (e-mail: [email protected]) SUMMARY Myeloperoxidase is a leukocyte component able to to αM (CD11b) or to β2 (CD18) integrin subunits, but not generate potent microbicidal substances. A homologous by antibodies to αL (CD11a), αX (CD11c), or to other invertebrate blood cell protein, peroxinectin, is not only integrins. Native myeloperoxidase mediated dose- a peroxidase but also a cell adhesion ligand. We demon- dependent cell adhesion down to relatively low concen- strate in this study that human myeloperoxidase also trations, and denaturation abolished the adhesion mediates cell adhesion. Both the human myeloid cell line activity. It is evident that myeloperoxidase supports cell HL-60, when differentiated by treatment with 12-O- adhesion, a function which may be of considerable tetradecanoyl-phorbol-13-acetate (TPA) or retinoic acid, importance for leukocyte migration and infiltration in and human blood leukocytes, adhered to myeloperoxi- inflammatory reactions, that αMβ2 integrin (Mac-1 or dase; however, undifferentiated HL-60 cells showed only CD11b/CD18) mediates this adhesion, and that the αMβ2 minimal adhesion. -
Marlin Marine Information Network Information on the Species and Habitats Around the Coasts and Sea of the British Isles
MarLIN Marine Information Network Information on the species and habitats around the coasts and sea of the British Isles Sugar kelp (Saccharina latissima) MarLIN – Marine Life Information Network Biology and Sensitivity Key Information Review Nicola White & Charlotte Marshall 2007-09-06 A report from: The Marine Life Information Network, Marine Biological Association of the United Kingdom. Please note. This MarESA report is a dated version of the online review. Please refer to the website for the most up-to-date version [https://www.marlin.ac.uk/species/detail/1375]. All terms and the MarESA methodology are outlined on the website (https://www.marlin.ac.uk) This review can be cited as: White, N. & Marshall, C.E. 2007. Saccharina latissima Sugar kelp. In Tyler-Walters H. and Hiscock K. (eds) Marine Life Information Network: Biology and Sensitivity Key Information Reviews, [on-line]. Plymouth: Marine Biological Association of the United Kingdom. DOI https://dx.doi.org/10.17031/marlinsp.1375.1 The information (TEXT ONLY) provided by the Marine Life Information Network (MarLIN) is licensed under a Creative Commons Attribution-Non-Commercial-Share Alike 2.0 UK: England & Wales License. Note that images and other media featured on this page are each governed by their own terms and conditions and they may or may not be available for reuse. Permissions beyond the scope of this license are available here. Based on a work at www.marlin.ac.uk (page left blank) Date: 2007-09-06 Sugar kelp (Saccharina latissima) - Marine Life Information Network See online review for distribution map Buoy line with Saccharina latissima. -
The Rise of Laminaria Ochroleuca in the Western English Channel (UK) and Comparisons with Its Competitor and Assemblage Dominant Laminaria Hyperborea Dan A
Marine Ecology. ISSN 0173-9565 ORIGINAL ARTICLE The rise of Laminaria ochroleuca in the Western English Channel (UK) and comparisons with its competitor and assemblage dominant Laminaria hyperborea Dan A. Smale1,2, Thomas Wernberg2, Anna L. E. Yunnie1 & Thomas Vance3 1 Marine Biological Association of the United Kingdom, Plymouth, UK 2 UWA Oceans Institute and School of Plant Biology, University of Western Australia, Crawley, WA, Australia 3 PML Applications Ltd, Plymouth, UK Keywords Abstract Climate change; habitat-forming species; kelp forest; Laminariales; range expansion. The distribution of species is shifting in response to recent climate change. Changes in the abundance and distributions of habitat-forming species can have Correspondence knock-on effects on community structure, biodiversity patterns and ecological Dan A. Smale, Marine Biological Association processes. We empirically examined temporal changes in the abundance of the of the United Kingdom, The Laboratory, warm-water kelp Laminaria ochroleuca at its poleward range edge in the Wes- Citadel Hill, Plymouth PL1 2PB, UK. tern English Channel. Resurveys of historical sites indicated that the abundance E-mail: [email protected] of L. ochroleuca has increased significantly in recent decades. Moreover, exami- Accepted: 24 June 2014 nation of historical records suggested that L. ochroleuca has extended its distri- bution from sheltered coasts on to moderately wave-exposed open coasts, where doi: 10.1111/maec.12199 it now co-exists and competes with the assemblage dominant Laminaria hyper- borea. Proliferation of L. ochroleuca at its poleward range edge corresponds with a period of rapid warming in the Western English Channel. Preliminary com- parisons between L. -
On the Regiospecificity of Vanadium Bromoperoxidase
J. Am. Chem. Soc. 2001, 123, 3289-3294 3289 On the Regiospecificity of Vanadium Bromoperoxidase Jennifer S. Martinez, Georgia L. Carroll, Richard A. Tschirret-Guth, Gereon Altenhoff, R. Daniel Little, and Alison Butler* Contribution from the Department of Chemistry and Biochemistry, UniVersity of California, Santa Barbara, California 93106-9510 ReceiVed December 5, 2000 Abstract: Vanadium haloperoxidase enzymes catalyze the oxidation of halide ions by hydrogen peroxide, producing an oxidized intermediate, which can halogenate an organic substrate or react with a second equivalent of hydrogen peroxide to produce dioxygen. Haloperoxidases are thought to be involved in the biogenesis of halogenated natural products isolated from marine organisms, including indoles and terpenes, of which many are selectively oxidized or halogenated. Little has been shown concerning the ability of the marine haloperoxidases to catalyze regioselective reactions. Here we report the regiospecific bromoperoxidative oxidation of 1,3-di-tert-butylindole by V-BrPO from the marine algae Ascophyllum nodosum and Corallina officinalis. Both enzymes catalyze the regiospecific oxidation of 1,3-di-tert-butylindole in a reaction requiring - both H2O2 and Br as substrates, but which produce the unbrominated 1,3-di-tert-butyl-2-indolinone product exclusively, in near quantitative yield (i.e. one H2O2 consumed per product). By contrast, reactions with the - controlled addition of aqueous bromine solution (HOBr ) Br2 ) Br3 ) produce three monobromo and one dibromo-2-indolinone products, all of which differ from the V-BrPO-catalyzed product. Further, reactivities of 1,3-di-tert-butyl-2-indolinone with both aqueous bromine and V-BrPO differ significantly and shed light onto the possible nature of the oxidizing intermediate. -
Peroxygenase Enzymatic Activity in Plants: Ginger, Rutabaga, And
Team New Groove February 14, 2020 BIOL 495-067 Dr. Gregory Raner Research Week 2020 Abstract Title: Peroxygenase Enzymatic Activity in Plants: Ginger and Jalapeno Peppers Program of Study: Biochemistry Presentation Type: Physical Poster Subtype Oral Presentation Type: Basic Mentor(s) and Mentor Email: Dr. Gregory Raner ([email protected]) Student(s) Name(s) and Email(s): Myles Robison ([email protected]) Mason Wolk ([email protected]) Dylan Taylor ([email protected]) Abstract: Peroxidases are a ubiquitous class of enzymes found in plants fungi and other higher organisms that catalyze chemical oxidations using hydrogen peroxide as an oxidant. They are useful in a number of industrial and biotechnological applications where non-selective oxidations are required. Though a number of plant peroxidases are known, much of the focused research has occurred with a single member from this family, horseradish peroxidase. Consequently, there is an incredibly rich diversity still available for discovery in the peroxidase world, with potentially novel industrial application. The long-range objective of the research described herein is to explore a very broad range of plant sources for isolation and characterization of novel peroxidase enzymes, with enzymatic characteristics that have previously been undiscovered. Sources selected for this study include skin samples from the root of ginger, root of rutabaga, and the seeds isolated from a variety of peppers of varying pungency on the Scoville scale. Crude preparations of the peroxidases have been accomplished through crushing of the tissue with a mortar and pestle in the presence of buffer, followed by high-speed centrifugation to remove plant debris. Activity was initially screened using the enzymatic conversion of guaiacol into tetraguaiacol in the presence of H2O2. -
The Molecular Mechanism of the Catalase-Like Activity In
Article pubs.acs.org/JACS The Molecular Mechanism of the Catalase-like Activity in Horseradish Peroxidase † ∥ † ‡ ‡ § Pablo Campomanes, , Ursula Rothlisberger, Mercedes Alfonso-Prieto,*, and Carme Rovira*, , † Laboratory of Computational Chemistry and Biochemistry, Institute of Chemical Sciences and Engineering, École Polytechnique Fedéralé de Lausanne (EPFL), CH-1015 Lausanne, Switzerland ‡ Departament de Química Organicà & Institut de Química Teoricà i Computacional (IQTCUB), Universitat de Barcelona, Martí i Franques̀ 1, 08208 Barcelona, Spain § InstitucióCatalana de Recerca i Estudis Avancatş (ICREA), Passeig Lluís Companys, 23, 08018 Barcelona, Spain *S Supporting Information ABSTRACT: Horseradish peroxidase (HRP) is one of the most relevant peroxidase enzymes, used extensively in immunochemistry and biocatalysis applications. Unlike the closely related catalase enzymes, it exhibits a low activity to disproportionate hydrogen peroxide (H2O2). The origin of this disparity remains unknown due to the lack of atomistic information on the catalase-like reaction in HRP. Using QM(DFT)/MM metadynamics simulations, we uncover the mechanism for reduction of the HRP Compound I intermediate by H2O2 at atomic detail. The reaction begins with a hydrogen atom transfer, forming a peroxyl radical and a Compound II-like species. Reorientation of the peroxyl radical in the active site, concomitant with the transfer of the second hydrogen atom, is the rate-limiting step, with a computed free energy barrier (18.7 kcal/mol, ∼ 6 kcal/mol higher than the one obtained for catalase) in good agreement with experiments. Our simulations reveal the crucial role played by the distal pocket residues in accommodating H2O2, enabling formation of a Compound II-like intermediate, similar to catalases. However, out of the two pathways for Compound II reduction found in catalases, only one is operative in HRP. -
Safety Assessment of Brown Algae-Derived Ingredients As Used in Cosmetics
Safety Assessment of Brown Algae-Derived Ingredients as Used in Cosmetics Status: Draft Report for Panel Review Release Date: August 29, 2018 Panel Meeting Date: September 24-25, 2018 The 2018 Cosmetic Ingredient Review Expert Panel members are: Chair, Wilma F. Bergfeld, M.D., F.A.C.P.; Donald V. Belsito, M.D.; Ronald A. Hill, Ph.D.; Curtis D. Klaassen, Ph.D.; Daniel C. Liebler, Ph.D.; James G. Marks, Jr., M.D.; Ronald C. Shank, Ph.D.; Thomas J. Slaga, Ph.D.; and Paul W. Snyder, D.V.M., Ph.D. The CIR Executive Director is Bart Heldreth, Ph.D. This report was prepared by Lillian C. Becker, former Scientific Analyst/Writer and Priya Cherian, Scientific Analyst/Writer. © Cosmetic Ingredient Review 1620 L Street, NW, Suite 1200 ♢ Washington, DC 20036-4702 ♢ ph 202.331.0651 ♢ fax 202.331.0088 [email protected] Distributed for Comment Only -- Do Not Cite or Quote Commitment & Credibility since 1976 Memorandum To: CIR Expert Panel Members and Liaisons From: Priya Cherian, Scientific Analyst/Writer Date: August 29, 2018 Subject: Safety Assessment of Brown Algae as Used in Cosmetics Enclosed is the Draft Report of 83 brown algae-derived ingredients as used in cosmetics. (It is identified as broalg092018rep in this pdf.) This is the first time the Panel is reviewing this document. The ingredients in this review are extracts, powders, juices, or waters derived from one or multiple species of brown algae. Information received from the Personal Care Products Council (Council) are attached: • use concentration data of brown algae and algae-derived ingredients (broalg092018data1, broalg092018data2, broalg092018data3); • Information regarding hydrolyzed fucoidan extracted from Laminaria digitata has been included in the report. -
MOLECULAR ANALYSIS of FATTY ACID PEROXYGENASE INVOLVED in the BIOSYNTHESIS of EPOXY FATTY ACIDS in OATS (Avena Sativa)
CORE Metadata, citation and similar papers at core.ac.uk Provided by University of Saskatchewan's Research Archive MOLECULAR ANALYSIS OF FATTY ACID PEROXYGENASE INVOLVED IN THE BIOSYNTHESIS OF EPOXY FATTY ACIDS IN OATS (Avena sativa) A Thesis Submitted to the College of Graduate Studies and Research In Partial Fulfillment of the Requirements For the Degree of Master of Science In the Department of Food and Bioproduct Sciences College of Agriculture and Bioresources University of Saskatchewan Saskatoon, Saskatchewan Canada By Indika Gayani Benaragama 2015 © Indika Gayani Benaragama, October, 2015. All Rights Reserved. PERMISSION TO USE In presenting this thesis/dissertation in partial fulfillment of the requirements for a Postgraduate degree from the University of Saskatchewan, I agree that the Libraries of this University may make it freely available for inspection. I further agree that permission for copying of this thesis/dissertation in any manner, in whole or in part, for scholarly purposes may be granted by the professor or professors who supervised my thesis/dissertation work or, in their absence, by the Head of the Department or the Dean of the College in which my thesis work was done. It is understood that any copying or publication or use of this thesis/dissertation or parts thereof for financial gain shall not be allowed without my written permission. It is also understood that due recognition shall be given to me and to the University of Saskatchewan in any scholarly use which may be made of any material in my thesis/dissertation. DISCLAIMER Reference in this thesis/dissertation to any specific commercial products, process, or service by trade name, trademark, manufacturer, or otherwise, does not constitute or imply its endorsement, recommendation, or favoring by the University of Saskatchewan. -
Division: Ochrophyta- 16,999 Species Order Laminariales: Class: Phaeophyceae – 2,060 Species 1
4/28/2015 Division: Ochrophyta- 16,999 species Order Laminariales: Class: Phaeophyceae – 2,060 species 1. Life History and Reproduction Order: 6. Laminariales- 148 species - Saxicolous - Sporangia always unilocular 2. Macrothallus Construction: - Most have sieve cells/elements - Pheromone released by female gametes lamoxirene Genus: Macrocystis 3. Growth Nereocystis Pterogophora Egregia Postelsia Alaria 2 14 Microscopic gametophytes Life History of Laminariales Diplohaplontic Alternation of Generations: organism having a separate multicellular diploid sporophyte and haploid gametophyte stage 3 4 1 4/28/2015 General Morphology: All baby kelps look alike 6 Intercalary growth Meristodermal growth Meristoderm/outer cortex – outermost cells (similar to cambia in land plants) Inner cortex – unpigmented cells Medulla – contains specialized cells (sieve elements/hyphae) Meristodermal growth gives thallus girth (mostly) “transition zone” Periclinal vs. Anticlinal cell division: • Periclinal = cell division parallel to the plane of the meristoderm girth •Anticlinal = cell division • Growth in both directions away from meristem • Usually between stipe and blade (or blade and pneumatocyst) perpendicular to the plane of the 7 meristoderm height 8 2 4/28/2015 Phaeophyceae Morphology of intercellular connections Anticlinal Pattern of cell division perpendicular to surface of algae. Only alga to transport sugar/photosynthate in sieve elements Periclinal Cell division parallel to surface of plant. Plasmodesmata = connections between adjacent cells, -
A High-Throughput Screening System Based on Droplet Microfluidics For
molecules Article A High-Throughput Screening System Based on Droplet Microfluidics for Glucose Oxidase Gene Libraries Radivoje Prodanovi´c 1,2,* , W. Lloyd Ung 2, Karla Ili´c Đurđi´c 1 , Rainer Fischer 3, David A. Weitz 2 and Raluca Ostafe 4 1 Faculty of Chemistry, University of Belgrade, Studentski trg 12, 11000 Belgrade, Serbia; [email protected] 2 Department of Physics, School of Engineering and Applied Sciences, Harvard University, Cambridge, MA 02138, USA; [email protected] (W.L.U.); [email protected] (D.A.W.) 3 Departments of Biological Sciences and Chemistry, Purdue University, 207 S. Martin Jischke Dr., West Lafayette, IN 47907, USA; fi[email protected] 4 Purdue Institute of Inflammation, Immunology and Infectious Disease, Molecular Evolution, Protein Engineering and Production, Purdue University, 207 S. Martin Jischke Dr., West Lafayette, IN 47907, USA; [email protected] * Correspondence: [email protected]; Tel.: +38-111-333-6660 Academic Editors: Goran T. Vladisavljevi´cand Guido Bolognesi Received: 20 April 2020; Accepted: 15 May 2020; Published: 22 May 2020 Abstract: Glucose oxidase (GOx) is an important industrial enzyme that can be optimized for specific applications by mutagenesis and activity-based screening. To increase the efficiency of this approach, we have developed a new ultrahigh-throughput screening platform based on a microfluidic lab-on-chip device that allows the sorting of GOx mutants from a saturation mutagenesis library expressed on the surface of yeast cells. GOx activity was measured by monitoring the fluorescence of water microdroplets dispersed in perfluorinated oil. The signal was generated via a series of coupled enzyme reactions leading to the formation of fluorescein. -
Conservation and Sustainable Development of the Sea of Alborán
Conservation and sustainable development of the Alboran Sea Cover photographs: 1. Sardina pilchardus (1877), Vincent Fossat (1822 – 1891). Coll. Muséum d’Histoire naturelle de Nice 2. Salinity at 0, 100 and 300m. http://bulletin.mercator-ocean.fr 3. Tangiers © OCEANA María José Cornax 4. Tursiops truncatus © Alnitak 5. Caretta caretta © Altinak 6. Corallium rubrum © OCEANA Juan Cuetos 7. Laminaria ochroleuca © Juan Carlos Calvín 8. Sea bed in the Alborán reserve © OCEANA Juan Cuetos 9. Containers © OCEANA Alberto Iglesias 10. Atlantic, Straits of Gibraltar and the Sea of Alborán. Image SeaWiFS (S1997361123941.png) http://visibleearth.nasa.gov The designation of geographical areas and the presentation of material in this book do not imply the expression of any opinion by the IUCN regarding the legal status of any country, territory or area, the authorities or about the delimitation of their frontiers or borders. The points of view expressed in this publication do not necessarily reflect those of the IUCN. The publication of this document has been made possible thanks to the financial support of the Malaga Provincial Council. Published by: IUCN, Gland, Switzerland and Malaga, Spain. Copyright: © 2010 International Union for the Conservation of Nature and Natural Resources The reproduction of this publication for educational and non-commercial purposes without the prior written permission of the copyright holders is authorised provided that the source is acknowledged. The reproduction of this publication for sale or for other commercial purposes without the prior written permission of the copyright holders is prohibited. Citation: Robles, R. (2010). Conservation and sustainable development of the Sea of Alborán / Conservación y desarrollo sostenible del mar de Alborán / Conservation et développement durable de la mer d’Alboran. -
New Automatically Built Profiles for a Better Understanding of the Peroxidase Superfamily Evolution
University of Geneva Practical training report submitted for the Master Degree in Proteomics and Bioinformatics New automatically built profiles for a better understanding of the peroxidase superfamily evolution presented by Dominique Koua Supervisors: Dr Christophe DUNAND Dr Nicolas HULO Laboratory of Plant Physiology, Dr Christian J.A. SIGRIST University of Geneva Swiss Institute of Bioinformatics PROSITE group. Geneva, April, 18th 2008 Abstract Motivation: Peroxidases (EC 1.11.1.x), which are encoded by small or large multigenic families, are involved in several important physiological and developmental processes. These proteins are extremely widespread and present in almost all living organisms. An important number of haem and non-haem peroxidase sequences are annotated and classified in the peroxidase database PeroxiBase (http://peroxibase.isb-sib.ch). PeroxiBase contains about 5800 peroxidase sequences classified as haem peroxidases and non-haem peroxidases and distributed between thirteen superfamilies and fifty subfamilies, (Passardi et al., 2007). However, only a few classification tools are available for the characterisation of peroxidase sequences: InterPro motifs, PRINTS and specifically designed PROSITE profiles. However, these PROSITE profiles are very global and do not allow the differenciation between very close subfamily sequences nor do they allow the prediction of specific cellular localisations. Due to the rapid growth in the number of available sequences, there is a need for continual updates and corrections of peroxidase protein sequences as well as for new tools that facilitate acquisition and classification of existing and new sequences. Currently, the PROSITE generalised profile building manner and their usage do not allow the differentiation of sequences from subfamilies showing a high degree of similarity.