Evaluation of Wetland Plants for Susceptibility To
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Phytopythium: Molecular Phylogeny and Systematics
Persoonia 34, 2015: 25–39 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158515X685382 Phytopythium: molecular phylogeny and systematics A.W.A.M. de Cock1, A.M. Lodhi2, T.L. Rintoul 3, K. Bala 3, G.P. Robideau3, Z. Gloria Abad4, M.D. Coffey 5, S. Shahzad 6, C.A. Lévesque 3 Key words Abstract The genus Phytopythium (Peronosporales) has been described, but a complete circumscription has not yet been presented. In the present paper we provide molecular-based evidence that members of Pythium COI clade K as described by Lévesque & de Cock (2004) belong to Phytopythium. Maximum likelihood and Bayesian LSU phylogenetic analysis of the nuclear ribosomal DNA (LSU and SSU) and mitochondrial DNA cytochrome oxidase Oomycetes subunit 1 (COI) as well as statistical analyses of pairwise distances strongly support the status of Phytopythium as Oomycota a separate phylogenetic entity. Phytopythium is morphologically intermediate between the genera Phytophthora Peronosporales and Pythium. It is unique in having papillate, internally proliferating sporangia and cylindrical or lobate antheridia. Phytopythium The formal transfer of clade K species to Phytopythium and a comparison with morphologically similar species of Pythiales the genera Pythium and Phytophthora is presented. A new species is described, Phytopythium mirpurense. SSU Article info Received: 28 January 2014; Accepted: 27 September 2014; Published: 30 October 2014. INTRODUCTION establish which species belong to clade K and to make new taxonomic combinations for these species. To achieve this The genus Pythium as defined by Pringsheim in 1858 was goal, phylogenies based on nuclear LSU rRNA (28S), SSU divided by Lévesque & de Cock (2004) into 11 clades based rRNA (18S) and mitochondrial DNA cytochrome oxidase1 (COI) on molecular systematic analyses. -
Uloga Gljiva I Gljivama Sličnih Organizama U Odumiranju Poljskoga Jasena (Fraxinus Angustifolia Vahl) U Posavskim Nizinskim Šumama U Republici Hrvatskoj
Uloga gljiva i gljivama sličnih organizama u odumiranju poljskoga jasena (Fraxinus angustifolia Vahl) u posavskim nizinskim šumama u Republici Hrvatskoj Kranjec, Jelena Doctoral thesis / Disertacija 2017 Degree Grantor / Ustanova koja je dodijelila akademski / stručni stupanj: University of Zagreb, Faculty of Forestry / Sveučilište u Zagrebu, Šumarski fakultet Permanent link / Trajna poveznica: https://urn.nsk.hr/urn:nbn:hr:108:239470 Rights / Prava: In copyright Download date / Datum preuzimanja: 2021-10-07 Repository / Repozitorij: University of Zagreb Faculty of Forestry and Wood Technology ŠUMARSKI FAKULTET Jelena Kranjec ULOGA GLJIVA I GLJIVAMA SLIČNIH ORGANIZAMA U ODUMIRANJU POLJSKOGA JASENA (Fraxinus angustifolia Vahl) U POSAVSKIM NIZINSKIM ŠUMAMA U REPUBLICI HRVATSKOJ DOKTORSKI RAD Zagreb, 2017. FACULTY OF FORESTRY Jelena Kranjec THE ROLE OF FUNGI AND FUNGUS-LIKE ORGANISMS IN DIEBACK OF NARROW- LEAVED ASH (Fraxinus angustifolia Vahl) IN POSAVINA LOWLAND FORESTS OF THE REPUBLIC OF CROATIA DOCTORAL THESIS Zagreb, 2017 ŠUMARSKI FAKULTET Jelena Kranjec ULOGA GLJIVA I GLJIVAMA SLIČNIH ORGANIZAMA U ODUMIRANJU POLJSKOGA JASENA (Fraxinus angustifolia Vahl) U POSAVSKIM NIZINSKIM ŠUMAMA U REPUBLICI HRVATSKOJ DOKTORSKI RAD Mentor: prof.dr.sc. Danko Diminić Zagreb, 2017. FACULTY OF FORESTRY Jelena Kranjec THE ROLE OF FUNGI AND FUNGUS-LIKE ORGANISMS IN DIEBACK OF NARROW- LEAVED ASH (Fraxinus angustifolia Vahl) IN POSAVINA LOWLAND FORESTS OF THE REPUBLIC OF CROATIA DOCTORAL THESIS Supervisor: prof. Danko Diminić, Ph.D. Zagreb, 2017 KLJUČNA DOKUMENTACIJSKA KARTICA Uloga gljiva i gljivama sličnih organizama u odumiranju poljskoga jasena TI (naslov) (Fraxinus angustifolia Vahl) u posavskim nizinskim šumama u Republici Hrvatskoj AU (autor) Jelena Kranjec Vladimira Nazora 59b, Sveti Ivan Zelina, Hrvatska, email: AD (adresa) [email protected] Šumarska knjižnica, Šumarski fakultet Sveučilišta u Zagrebu SO (izvor) Svetošimunska 25, 10002 Zagreb PY (godina objave) 2017. -
Phytophthora Hydropathica and Phytophthora Drechsleri Isolated from Irrigation Channels in the Culiacan Valley
Phytophthora hydropathica and Phytophthora drechsleri isolated from irrigation channels in the Culiacan Valley Phytophthora hydropathica y Phytophthora drechsleri aisladas de canales de irrigación del Valle de Culiacán Brando Álvarez-Rodríguez, Raymundo Saúl García-Estrada, José Benigno Valdez-Torres, Josefina León-Félix, Raúl Allende-Molar*. Centro de Investigación en Alimentación y Desarrollo. CIAD AC. Área de Horticultura. Km 5.5 Carretera Culiacán-Eldorado, Campo El Diez. Culiacán, Sinaloa, México. CP 80110 Teléfono 6677605536; Sylvia Patricia Fernández-Pavía. Universidad Michoacana de San Nicolás de Hidalgo, Laboratorio de Patología Vegetal, Instituto de Investigaciones Agropecuarias y Forestales. Km. 9.5 Carretera Morelia-Zinapécuaro, Tarímbaro, Michoacán. CP 58880. Teléfono (443) 2958323. (brando. [email protected], [email protected], [email protected], [email protected], [email protected], [email protected]). *Autor para correspondencia: [email protected]. Recibido: 13 de junio 2016. Aceptado: 27 de septiembre 2016. Álvarez-Rodríguez B, García-Estrada RS, Valdez- Abstract. Up to date, there are no reports of Torres JB, León-Félix J, Allende-Molar R. Fernán- the presence of Phytophthora species in surface dez-Pavia SP. 2017. Phytophthora hydropathica water bodies in Mexico, which represents a risk and Phytophthora drechsleri isolated from irriga- for the local agriculture. During January 2015, tion channels in the Culiacan Valley. Revista Mexi- 25 irrigation channels from Culiacan Valley were cana de Fitopatología 35: 20-39. sampled for the isolation of Phytophthora spp. DOI: 10.18781/R.MEX.FIT.1606-1 Isolates were obtained with rhododendron leaves Primera publicación DOI: 22 de Octubre, 2016. and pear fruits baits. Twenty-nine isolates of First DOI publication: October 22, 2016. -
Phytophthora Nicotianae
DOTTORATO DI RICERCA IN “GESTIONE FITOSANITARIA ECO- COMPATIBILE IN AMBIENTI AGRO- FORESTALI E URBANI” XXII Ciclo (S.S.D. AGR/12) UNIVERSITÀ DEGLI STUDI DI PALERMO Dipartimento DEMETRA Sede consorziata UNIVERSITÀ “MEDITERRANEA” DI REGGIO CALABRIA Dipartimento GESAF Intraspecific variability in the Oomycete plant pathogen Phytophthora nicotianae Dottorando Dott. Marco Antonio Mammella Coordinatore Prof. Stefano Colazza Tutor Prof. Leonardo Schena Co-tutor Dott. Frank Martin Prof.ssa Antonella Pane Contents Preface I General abstract II Chapter I – General Introduction 1 I.1 Introduction to Oomycetes and Phytophthora 2 I.1.1 Biology and genetics of Phytophthora nicotianae 3 I.2 Phytophthora nicotianae diseases 4 I.2.1 Black shank of tobacco 5 I.2.2 Root rot of citrus 6 I.3 Population genetics of Phytophthora 8 I.3.1 Forces acting on natural populations 8 I.3.1.1 Selection 8 I.3.1.2 Reproductive system 9 I.3.1.3 Mutation 10 I.3.1.4 Gene flow and migration 11 I.3.1.5 Genetic drift 11 I.3.2 Genetic structure of population in the genus Phytophthora spp. 12 I.3.2.1 Phytophthora infestans 12 I.3.2.2 Phytophthora ramorum 14 I.3.2.3 Phytophthora cinnamomi 15 I.4 Marker for population studies 17 I.4.1 Mitochondrial DNA 18 I.4.2 Nuclear marker 19 I.4.2.1 Random amplified polymorphic DNA (RAPD) 19 I.4.2.2 Restriction fragment length polymorphisms (RFLP) 20 I.4.2.3 Amplified fragment length polymorphisms (AFLP) 21 I.4.2.4 Microsatellites 22 I.4.2.5 Single nucleotide polymorphisms (SNPs) 23 I.4.2.5.1 Challenges using nuclear sequence markers 24 I.5 -
Redalyc.Phytophthora Hydropathica and Phytophthora Drechsleri
Revista Mexicana de Fitopatología E-ISSN: 2007-8080 [email protected] Sociedad Mexicana de Fitopatología, A.C. México Álvarez-Rodríguez, Brando; García-Estrada, Raymundo Saúl; Valdez-Torres, José Benigno; León-Félix, Josefina; Allende-Molar, Raúl; Fernández-Pavía, Sylvia Patricia Phytophthora hydropathica and Phytophthora drechsleri isolated from irrigation channels in the Culiacan Valley Revista Mexicana de Fitopatología, vol. 35, núm. 1, enero, 2017, pp. 20-39 Sociedad Mexicana de Fitopatología, A.C. Texcoco, México Available in: http://www.redalyc.org/articulo.oa?id=61249777002 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative Phytophthora hydropathica and Phytophthora drechsleri isolated from irrigation channels in the Culiacan Valley Phytophthora hydropathica y Phytophthora drechsleri aisladas de canales de irrigación del Valle de Culiacán Brando Álvarez-Rodríguez, Raymundo Saúl García-Estrada, José Benigno Valdez-Torres, Josefina León-Félix, Raúl Allende-Molar*. Centro de Investigación en Alimentación y Desarrollo. CIAD AC. Área de Horticultura. Km 5.5 Carretera Culiacán-Eldorado, Campo El Diez. Culiacán, Sinaloa, México. CP 80110 Teléfono 6677605536; Sylvia Patricia Fernández-Pavía. Universidad Michoacana de San Nicolás de Hidalgo, Laboratorio de Patología Vegetal, Instituto de Investigaciones Agropecuarias y Forestales. Km. 9.5 Carretera Morelia-Zinapécuaro, Tarímbaro, Michoacán. CP 58880. Teléfono (443) 2958323. (brando. [email protected], [email protected], [email protected], [email protected], [email protected], [email protected]). *Autor para correspondencia: [email protected]. Recibido: 13 de junio 2016. -
Species of Phytophthora Associated with a Native Ecosystem in Gauteng
Species of Phytophthora associated with a native ecosystem in Gauteng by Jan Hendrik Nagel BSc Genetics (Hons) Submitted in partial fulfilment of the requirements for the degree Magister Scientiae In the Faculty of Natural & Agricultural Sciences, Department of Genetics, University of Pretoria, Pretoria September 2012 Supervisor: Dr. Marieka Gryzenhout Co-supervisors: Prof. Bernard Slippers Prof. Michael J. Wingfield i Declaration I, Jan Hendrik Nagel, declare that the thesis/dissertation, which I hereby submit for the degree Magister Scientiae at the University of Pretoria, is my own work and has not previously been submitted by me for a degree at this or any other tertiary institution. SIGNATURE: ___________________________ DATE: ________________________________ ii TABLE OF CONTENTS ACKNOWLEDGEMENTS 1 PREFACE 2 CHAPTER 1 4 DIVERSITY , SPECIES RECOGNITION AND ENVIRONMENTAL DETECTION OF Phytophthora spp. 1. INTRODUCTION 6 2. THE OOMYCETES 7 2.1. OOMYCETES VERSUS FUNGI 7 2.2. TAXONOMY OF OOMYCETES 7 2.3. DIVERSITY AND IMPACT OF OOMYCETES 9 2.4. IMPACT OF Phytophthora 11 3. SPECIES RECOGNITION IN Phytophthora 13 3.1. MORPHOLOGICAL SPECIES CONCEPT 14 3.2. BIOLOGICAL SPECIES CONCEPT 14 3.3. PHYLOGENETIC SPECIES CONCEPT 15 4. STUDYING Phytophthora IN NATIVE ECOSYSTEMS 17 4.1. ISOLATION AND CULTURE OF Phytophthora 17 4.2. MOLECULAR DETECTION AND IDENTIFICATION TECHNIQUES FOR Phytophthora 19 4.3. RESTRICTION FRAGMENT LENGTH POLYMORPHISM (RFLP) 19 4.4. SINGLE -STRAND CONFORMATION POLYMORPHISM (SSCP) 20 4.5. PCR DETECTION WITH SPECIES -SPECIFIC PRIMERS 21 4.6. QUANTATIVE PCR 22 4.7. DNA HYBRIDIZATION BASED TECHNIQUES 23 4.8. SEROLOGICAL TECHNIQUES 24 4.9. PCR AMPLIFICATION WITH GENUS SPECIFIC PRIMERS 25 5. -
Diseases of Floriculture Crops in South Carolina
Clemson University TigerPrints All Theses Theses 8-2009 Diseases of Floriculture Crops in South Carolina: Evaluation of a Pre-plant Sanitation Treatment and Identification of Species of Phytophthora Ernesto Robayo Camacho Clemson University, [email protected] Follow this and additional works at: https://tigerprints.clemson.edu/all_theses Part of the Plant Pathology Commons Recommended Citation Robayo Camacho, Ernesto, "Diseases of Floriculture Crops in South Carolina: Evaluation of a Pre-plant Sanitation Treatment and Identification of Species of Phytophthora" (2009). All Theses. 663. https://tigerprints.clemson.edu/all_theses/663 This Thesis is brought to you for free and open access by the Theses at TigerPrints. It has been accepted for inclusion in All Theses by an authorized administrator of TigerPrints. For more information, please contact [email protected]. DISEASES OF FLORICULTURE CROPS IN SOUTH CAROLINA: EVALUATION OF A PRE‐PLANT SANITATION TREATMENT AND IDENTIFICATION OF SPECIES OF PHYTOPHTHORA A Thesis Presented to the Graduate School of Clemson University In Partial Fulfillment of the Requirements for the Degree Master of Science Plant and Environmental Sciences by Ernesto Robayo Camacho August 2009 Accepted by: Steven N. Jeffers, Committee Chair Julia L. Kerrigan William C. Bridges, Jr. ABSTRACT This project was composed of two separate studies. In one study, the species of Phytophthora that have been found associated with diseased floriculture crops in South Carolina and four other states were characterized and identified using molecular (RFLP fingerprints and DNA sequences for ITS regions and cox I and II genes), morphological (sporangia, oogonia, antheridia, oospores, and chlamydospores), and physiological (mating behavior and cardinal temperatures) characters. -
(GISD) 2021. Species Profile Phytophthora Cinnamomi. A
FULL ACCOUNT FOR: Phytophthora cinnamomi Phytophthora cinnamomi System: Terrestrial Kingdom Phylum Class Order Family Fungi Oomycota Peronosporea Peronosporales Peronosporaceae Common name wildflower dieback (English, Australia), Phytophthora Faeule der Scheinzypresse (German), seedling blight (English), phytophthora root rot (English), cinnamon fungus (English, Australia), phytophthora crown and root rot (English), jarrah dieback (English, Western Australia), green fruit rot (English), heart rot (English), stem canker (English) Synonym Similar species Phytophthora cactorum, Phytophthora cambivora, Phytophthora castaneae, Phytophthora citrophthora, Phytophthora colocasiae, Phytophthora drechsleri, Phytophthora infestans, Phytophthora katsurae, Phytophthora manoana, Phytophthora nicotianae var. parasitica, Phytophthora palmivora, Phytophthora parasitica Summary The oomycete, Phytophthora cinnamomi, is a widespread soil-borne pathogen that infects woody plants causing root rot and cankering. It needs moist soil conditions and warm temperatures to thrive, and is particularly damaging to susceptible plants (e.g. drought stressed plants in the summer). P. cinnamomi poses a threat to forestry, ornamental and fruit industries, and infects over 900 woody perennial species. Diagnostic techniques are expensive and require expert identification. Prevention and chemical use are typically used to lessen the impact of P. cinnamomi. view this species on IUCN Red List Global Invasive Species Database (GISD) 2021. Species profile Phytophthora Pag. 1 cinnamomi. Available from: http://www.iucngisd.org/gisd/species.php?sc=143 [Accessed 06 October 2021] FULL ACCOUNT FOR: Phytophthora cinnamomi Species Description Phytophthora cinnamomi is a destructive and widespread soil-borne pathogen that infects woody plant hosts. P. cinnamomi spreads both by chlamydospores as well as water-propelled zoospores. The presence of the oomycete is only determinable by soil or root laboratory analysis, although its effects upon the vegetation it destroys are readily evident (Parks and Wildlife, 2004). -
Pseudoperonospora Humuli) and Tolerance by Phytophthora Isolates to the Systemic Fungicide Meta- Laxyl
AN ABSTRACT OF THE THESIS OF Robert M. Hunger for the degree of Doctor of Philosophy inPlant Pathology presented on March 17, 1982 Title: Chemical Control of Hop Downy Mildew (Pseudoperonospora humuli) and Tolerance by Phytophthora Isolates to the Systemic Fungicide Meta- laxyl. Abstract approved: Redacted for privacy Dr. Chester E. Horner Four systemic fungicides (metalaxyl, M 9834, propamocarb, and efosite aluminum) were evaluated for control of the downy mildew disease (Pseudoperonospora humuli) of hops (Humulus lupulus). Metalaxyl applied at 0.3 gm/plant in mid-April resulted in nearly complete control of the disease and increased yields significantly. Treatment with M 9834 at 0.3 gm/plant resulted in control comparable to metalaxyl up to four weeks after application, but disease incidence increased sharply after six weeks. Propamocarb and efosite aluminum treatments were less effective than metalaxyl or M 9834, but did result in substantial disease control. The possibility that metalaxyl tolerance occurs in Phytophthora, fungus related to Pseudoperonospora was examined in vitro. Thirty- five isolates of Phytophthora megasperma were tested for tolerance to metalaxyl. Tolerance was measured by comparing isolate growth, and oogonia and sporangia formation on amended and control media. Based on growth at 0, 1, and 10 pg metalaxyl/ml, 15 isolates were highly sensitive, 8 moderately tolerant, and 12 highly tolerant to the fungi- cide. No isolates in the highly sensitive group formed oogonia at 1 pg metalaxyl/ml, whereas six isolates from the moderately tolerant group, and eight from the highly tolerant group did. The number of isolates forming sporangia and the mean number of sporangia formed per isolate decreased with increasing fungicide concentration. -
A Desk Study to Review Global Knowledge on Best Practice for Oomycete Root-Rot Detection and Control
Project title: A desk study to review global knowledge on best practice for oomycete root-rot detection and control Project number: CP 126 Project leader: Dr Tim Pettitt Report: Final report, March 2015 Previous report: None Key staff: Dr G M McPherson Dr Alison Wakeham Location of project: University of Worcester Stockbridge Technology Centre Industry Representative: Russ Woodcock, Bordon Hill Nurseries Ltd, Bordon Hill, Stratford-upon-Avon, Warwickshire, CV37 9RY Date project commenced: April 2014 Date project completed April 2015 AHDB Horticulture is a Division of the Agriculture and Horticulture Development Board DISCLAIMER While the Agriculture and Horticulture Development Board seeks to ensure that the information contained within this document is accurate at the time of printing, no warranty is given in respect thereof and, to the maximum extent permitted by law the Agriculture and Horticulture Development Board accepts no liability for loss, damage or injury howsoever caused (including that caused by negligence) or suffered directly or indirectly in relation to information and opinions contained in or omitted from this document. ©Agriculture and Horticulture Development Board 2015. No part of this publication may be reproduced in any material form (including by photocopy or storage in any medium by electronic mean) or any copy or adaptation stored, published or distributed (by physical, electronic or other means) without prior permission in writing of the Agriculture and Horticulture Development Board, other than by reproduction in an unmodified form for the sole purpose of use as an information resource when the Agriculture and Horticulture Development Board or AHDB Horticulture is clearly acknowledged as the source, or in accordance with the provisions of the Copyright, Designs and Patents Act 1988. -
Catalogue Introduction
Catalogue Introduction ..................................................................................................................... 1 RBGE work on Phytophthora ..................................................................... 1 Overview of Oomycetes .............................................................................................. 1 Molecular Evidence of the Evolution of Oomycetes .................................. 3 Taxonomy within Oomycetes ..................................................................... 3 Species discovery ........................................................................................................ 7 Taxonomy of Phytophthora ........................................................................ 7 Morphological taxonomy review of Phytophthora ............................. 7 Molecular taxonomy and phylogeny of Phytophthora ....................... 8 DNA Barcoding analysis........................................................................... 10 Internal transcribed spacer (ITS) ...................................................... 10 Mitochondrial DNA .......................................................................... 12 Aim and Purpose ........................................................................................................... 19 Material and Methods.................................................................................................... 20 Polymorphism Evaluation of ITS, Cox2 and Cox spacer as DNA Barcodes ............ 20 Sequence editing, -
Repeated Emergence, Motility, and Autonomous Dispersal by Sporangial and Cyst Derived Zoospores of Phytophthora Spp
REPEATED EMERGENCE, MOTILITY, AND AUTONOMOUS DISPERSAL BY SPORANGIAL AND CYST DERIVED ZOOSPORES OF PHYTOPHTHORA SPP. By DANIEL O. OTAYE Bachelor of Science Egerton University Njoro, Kenya 1995 Master of Science Egerton University Njoro, Kenya 1998 Submitted to the Faculty of the Graduate College of the Oklahoma State University in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY May, 2005 REPEATED EMERGENCE, MOTILITY, AND AUTONOMOUS DISPERSAL BY SPORANGIAL AND CYST DERIVED ZOOSPORES OF PHYTOPHTHORA SPP. Thesis Approved: Dr. Sharon L. von Broembsen Thesis Adviser Dr. Larry J. Littlefield Dr. Larry L. Singleton Dr. Michael Smolen Dr. Nathan Walker Dr. A. Gordon Emslie Dean of the Graduate College ii ACKNOWLEDGEMENTS I wish to express my sincere gratitude to my major advisor, Dr Sharon L. von Broembsen for her immeasurable material and moral support, constructive guidance and unequaled friendship throughout my graduate study at Oklahoma State University. I would also like to extend my appreciation to my committee members Drs Larry Littlefield, Larry Singleton, Nathan Walker, and Michael Smolen whose guidance, patience and friendship was a tremendous source of encouragement. I extend my thanks to the faculty, staff and students of the Department of Entomology and Plant Pathology for their help and understanding during my studies. I greatly appreciate all the support provided by Department of Entomology and Plant Pathology during the course of my studies. I do extend my deepest appreciation to my wife, Hildah, and daughter, Marion for patience, prayer and sacrifice throughout this learning process. I wish to give special thanks to my parents for their sacrifice to educate a mind, and my parents-in-law for their prayers, encouragement and understanding.